Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0021194

Physical Location & Seq

Genomic Coordinates Forward (+)

3762798 .. 3771832

Gene Structure 9035 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1021300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGAAGGAGCTATCTAAGCTTTATTTGGGTGGCACTGCAATTAAGGAGCTGCCTGCTTCTATTTTAAATCTCACCAGTCTTGATACTTTGAATCTGAATGATTGCAGAGAACTTGAGAGTCTTCCAAGCGGCATTTCTCACTTGAAATCTCTTAAATACCTTGATGTTTCTGAATGCTCAAAGCTTGAGAAGTTTCCAGAAATTTCCAAGGTTATGAACAAGCTATCAGAGTTCTCAATTGAACAATTTGTTCACAGCATGCTATCGTGCTTTGTCTATCCTTTGGGAAAATGCAGGGGAGAGCCTTCTCTCGCTCTCAAATCCGGGGAATCATGTCGCACCACTAGTCCTGCCGCACCACCAGTGTTCCTCCGCTTTACTGAAGGCCACACAGCGCGCCACTTACGGGTGACGCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009615 GO:0009617 GO:0009626 GO:0009628 GO:0009639 GO:0009870 GO:0009987 GO:0010114 GO:0012501 GO:0012505 GO:0016020 GO:0023052 GO:0031347 GO:0031349 GO:0033554 GO:0034050 GO:0042742 GO:0042802 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0080134 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

140

Amino Acids

15.4

Weight (kDa)

8.28

Isoelectric Point (pI)

47.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	7 - 83	5.2e-11	Leucine-rich repeat region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0021194)

Species	Orthologous Gene IDs
malus_domestica	MD00G1020000.v1.1 MD00G1021300.v1.1 MD17G1208800.v1.1
pyrus_communis	pycom07g23420 pycom17g21280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	397
AciI	CCGC	3 cut(s)	129, 354, 373
AcsI	RAATTY	1 cut(s)	201
AcuI	CTGAAG	1 cut(s)	402
AcyI	GRCGYC	1 cut(s)	413
AfiI	CCNNNNNNNGG	1 cut(s)	406
AgsI	TTSAA	3 cut(s)	91, 145, 242
AhlI	ACTAGT	1 cut(s)	344
AjuI	GAANNNNNNNTTGG	2 cut(s)	118, 150
AluBI	AGCT	5 cut(s)	10, 19, 49, 184, 223
AluI	AGCT	5 cut(s)	10, 19, 49, 184, 223
AoxI	GGCC	1 cut(s)	385
ApeKI	GCWGC	1 cut(s)	49
ApoI	RAATTY	1 cut(s)	201
AspLEI	GCGC	2 cut(s)	397, 399
AsuC2I	CCSGG	1 cut(s)	325
AsuHPI	GGTGA	1 cut(s)	64
BbsI	GAAGAC	1 cut(s)	113
BbvI	GCAGC	1 cut(s)	36
BcnI	CCSGG	1 cut(s)	325
BcuI	ACTAGT	1 cut(s)	344
BfaI	CTAG	2 cut(s)	345, 418
BisI	GCNGC	3 cut(s)	50, 130, 354
BlsI	GCNGC	3 cut(s)	51, 131, 355
Bme1390I	CCNGG	1 cut(s)	325
BmrFI	CCNGG	1 cut(s)	325
BpiI	GAAGAC	1 cut(s)	113
BpuEI	CTTGAG	2 cut(s)	134, 206
BpuMI	CCSGG	1 cut(s)	325
BsaHI	GRCGYC	1 cut(s)	413
BsaJI	CCNNGG	2 cut(s)	207, 324
Bsc4I	CCNNNNNNNGG	1 cut(s)	406
Bse1I	ACTGG	2 cut(s)	75, 362
BseDI	CCNNGG	2 cut(s)	207, 324
BseLI	CCNNNNNNNGG	1 cut(s)	406
BseNI	ACTGG	2 cut(s)	75, 362
BsePI	GCGCGC	1 cut(s)	395
BseXI	GCAGC	1 cut(s)	36
Bsh1236I	CGCG	1 cut(s)	397
BshFI	GGCC	1 cut(s)	387
BsiSI	CCGG	1 cut(s)	324
BslI	CCNNNNNNNGG	1 cut(s)	406
BsmI	GAATGC	1 cut(s)	179
BsnI	GGCC	1 cut(s)	387
BspACI	CCGC	3 cut(s)	129, 354, 373
BspANI	GGCC	1 cut(s)	387
BspFNI	CGCG	1 cut(s)	397
BsrI	ACTGG	2 cut(s)	75, 362
BssECI	CCNNGG	2 cut(s)	207, 324
BssHII	GCGCGC	1 cut(s)	395
BssNI	GRCGYC	1 cut(s)	413
BssT1I	CCWWGG	1 cut(s)	207
BstACI	GRCGYC	1 cut(s)	413
BstC8I	GCNNGC	3 cut(s)	54, 260, 397
BstDEI	CTNAG	1 cut(s)	15
BstFNI	CGCG	1 cut(s)	397
BstHHI	GCGC	2 cut(s)	397, 399
BstMWI	GCNNNNNNNGC	1 cut(s)	16
BstNSI	RCATGY	1 cut(s)	262
BstSCI	CCNGG	1 cut(s)	323
BstUI	CGCG	1 cut(s)	397
BstV1I	GCAGC	1 cut(s)	36
BstV2I	GAAGAC	1 cut(s)	113
BsuRI	GGCC	1 cut(s)	387
BtsI	GCAGTG	1 cut(s)	33
BtsIMutI	CAGTG	2 cut(s)	33, 369
Cac8I	GCNNGC	3 cut(s)	54, 260, 397
CfoI	GCGC	2 cut(s)	397, 399
CviAII	CATG	2 cut(s)	259, 333
CviJI	RGCY	7 cut(s)	10, 19, 49, 184, 223, 304, 387
CviKI_1	RGCY	7 cut(s)	10, 19, 49, 184, 223, 304, 387
DdeI	CTNAG	1 cut(s)	15
DraI	TTTAAA	1 cut(s)	66
Eco130I	CCWWGG	1 cut(s)	207
Eco57I	CTGAAG	1 cut(s)	402
EcoT14I	CCWWGG	1 cut(s)	207
ErhI	CCWWGG	1 cut(s)	207
FaeI	CATG	2 cut(s)	262, 336
FaiI	YATR	3 cut(s)	215, 260, 334
FatI	CATG	2 cut(s)	258, 332
Fnu4HI	GCNGC	3 cut(s)	50, 130, 354
Fsp4HI	GCNGC	3 cut(s)	50, 130, 354
FspBI	CTAG	2 cut(s)	345, 418
GlaI	GCGC	2 cut(s)	396, 398
GluI	GCNGC	3 cut(s)	50, 130, 354
HaeIII	GGCC	1 cut(s)	387
HapII	CCGG	1 cut(s)	324
HhaI	GCGC	2 cut(s)	397, 399
Hin1I	GRCGYC	1 cut(s)	413
Hin1II	CATG	2 cut(s)	262, 336
Hin6I	GCGC	2 cut(s)	395, 397
HinP1I	GCGC	2 cut(s)	395, 397
HindIII	AAGCTT	2 cut(s)	17, 182
HinfI	GANTC	3 cut(s)	91, 118, 329
HpaII	CCGG	1 cut(s)	324
HphI	GGTGA	1 cut(s)	64
Hpy166II	GTNNAC	1 cut(s)	253
Hpy188I	TCNGA	3 cut(s)	96, 172, 229
Hpy188III	TCNNGA	2 cut(s)	80, 197
Hpy8I	GTNNAC	1 cut(s)	253
HpyAV	CCTTC	2 cut(s)	315, 377
HpyCH4V	TGCA	3 cut(s)	38, 105, 294
HpyF10VI	GCNNNNNNNGC	1 cut(s)	16
HpyF3I	CTNAG	1 cut(s)	15
Hsp92I	GRCGYC	1 cut(s)	413
Hsp92II	CATG	2 cut(s)	262, 336
HspAI	GCGC	2 cut(s)	395, 397
LmnI	GCTCC	2 cut(s)	7, 46
LpnPI	CCDG	7 cut(s)	66, 88, 210, 280, 337, 363, 375
Lsp1109I	GCAGC	1 cut(s)	36
MaeI	CTAG	2 cut(s)	345, 418
MaeIII	GTNAC	1 cut(s)	409
MboII	GAAGA	1 cut(s)	113
MfeI	CAATTG	1 cut(s)	237
MluCI	AATT	4 cut(s)	39, 201, 237, 245
MlyI	GAGTC	1 cut(s)	127
MnlI	CCTC	1 cut(s)	380
MseI	TTAA	3 cut(s)	42, 65, 153
MspI	CCGG	1 cut(s)	324
MspR9I	CCNGG	1 cut(s)	325
MunI	CAATTG	1 cut(s)	237
Mva1269I	GAATGC	1 cut(s)	179
MvnI	CGCG	1 cut(s)	397
MwoI	GCNNNNNNNGC	1 cut(s)	16
NciI	CCSGG	1 cut(s)	325
NlaIII	CATG	2 cut(s)	262, 336
NmuCI	GTSAC	1 cut(s)	409
NspI	RCATGY	1 cut(s)	262
PaeI	GCATGC	1 cut(s)	262
PauI	GCGCGC	1 cut(s)	395
PctI	GAATGC	1 cut(s)	179
PfeI	GAWTC	2 cut(s)	91, 329
PkrI	GCNGC	3 cut(s)	51, 131, 355
PleI	GAGTC	1 cut(s)	126
PpsI	GAGTC	1 cut(s)	126
PteI	GCGCGC	1 cut(s)	395
SaqAI	TTAA	3 cut(s)	42, 65, 153
SatI	GCNGC	3 cut(s)	50, 130, 354
SchI	GAGTC	1 cut(s)	127
ScrFI	CCNGG	1 cut(s)	325
SetI	ASST	7 cut(s)	12, 21, 51, 162, 186, 213, 225
SmlI	CTYRAG	2 cut(s)	113, 185
SmoI	CTYRAG	2 cut(s)	113, 185
SpeI	ACTAGT	1 cut(s)	344
SphI	GCATGC	1 cut(s)	262
Sse9I	AATT	4 cut(s)	39, 201, 237, 245
SsiI	CCGC	3 cut(s)	129, 354, 373
SspMI	CTAG	2 cut(s)	345, 418
StyD4I	CCNGG	1 cut(s)	323
StyI	CCWWGG	1 cut(s)	207
TasI	AATT	4 cut(s)	39, 201, 237, 245
TauI	GCSGC	2 cut(s)	132, 356
TfiI	GAWTC	2 cut(s)	91, 329
Tru1I	TTAA	3 cut(s)	42, 65, 153
Tru9I	TTAA	3 cut(s)	42, 65, 153
TscAI	CASTG	2 cut(s)	40, 369
TseFI	GTSAC	1 cut(s)	409
TseI	GCWGC	1 cut(s)	49
Tsp45I	GTSAC	1 cut(s)	409
TspDTI	ATGAA	2 cut(s)	17, 230
TspRI	CASTG	2 cut(s)	40, 369
XapI	RAATTY	1 cut(s)	201
XceI	RCATGY	1 cut(s)	262
XspI	CTAG	2 cut(s)	345, 418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.