Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0021194

Physical Location & Seq

Genomic Coordinates Forward (+)

24355466 .. 24355816

Gene Structure 351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g23420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGTATCCGGGTAAAAAAATTAAAGAACTGTCCTTGTCAATTAGAAATCTAACTGGGGCTTCGTATTTTGGGCCTAGAATATTAAGTAGTCTACCAAGCAGCATTTGTCAACTTAAATCCCTGATTTATCTTTCTCTTTATGGTTGTGCAAACTTTGAGGTGATTCTAAGCATTGTAGAATTCAGAAGGTGTGTAGAGCTCCGGCTTGGGTGTTTACACCACCTCCTTACCTGTTGCTCGTGGCCATTTTTTGAGGTTCAGCTTGGTTTGATTTCATATAGTCGCAGGGGAATCTGGTTTCAGATGGGTGGAAAGTGGCGTTCCGAGGTGGAGTTGGCTGAAAGCTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009314 GO:0009416 GO:0009605 GO:0009607 GO:0009615 GO:0009617 GO:0009626 GO:0009628 GO:0009639 GO:0009870 GO:0009987 GO:0010114 GO:0012501 GO:0012505 GO:0016020 GO:0023052 GO:0031347 GO:0031349 GO:0033554 GO:0034050 GO:0042742 GO:0042802 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0080134 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

117

Amino Acids

13.3

Weight (kDa)

9.0

Isoelectric Point (pI)

37.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021194)

Species	Orthologous Gene IDs
malus_domestica	MD00G1020000.v1.1 MD00G1021300.v1.1 MD17G1208800.v1.1
pyrus_communis	pycom07g23420 pycom17g21280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	91
AcoI	YGGCCR	1 cut(s)	242
AcsI	RAATTY	1 cut(s)	179
AluBI	AGCT	3 cut(s)	199, 262, 345
AluI	AGCT	3 cut(s)	199, 262, 345
Alw21I	GWGCWC	1 cut(s)	201
AoxI	GGCC	2 cut(s)	71, 242
ApeKI	GCWGC	1 cut(s)	99
ApoI	RAATTY	1 cut(s)	179
AspS9I	GGNCC	1 cut(s)	71
AsuC2I	CCSGG	1 cut(s)	9
AsuHPI	GGTGA	1 cut(s)	172
BalI	TGGCCA	1 cut(s)	244
BanII	GRGCYC	1 cut(s)	201
BauI	CACGAG	1 cut(s)	238
Bbv12I	GWGCWC	1 cut(s)	201
BbvI	GCAGC	1 cut(s)	111
BccI	CCATC	1 cut(s)	298
BciVI	GTATCC	1 cut(s)	15
BcnI	CCSGG	1 cut(s)	9
BfaI	CTAG	2 cut(s)	75, 349
BfuI	GTATCC	1 cut(s)	15
BisI	GCNGC	1 cut(s)	100
BlsI	GCNGC	1 cut(s)	101
Bme1390I	CCNGG	1 cut(s)	9
BmgT120I	GGNCC	1 cut(s)	71
BmrFI	CCNGG	1 cut(s)	9
BmrI	ACTGGG	1 cut(s)	63
BmuI	ACTGGG	1 cut(s)	63
BpuMI	CCSGG	1 cut(s)	9
BsaJI	CCNNGG	1 cut(s)	324
BsaXI	ACNNNNNCTCC	2 cut(s)	207, 237
Bse1I	ACTGG	1 cut(s)	58
BseDI	CCNNGG	1 cut(s)	324
BseNI	ACTGG	1 cut(s)	58
BseXI	GCAGC	1 cut(s)	111
BshFI	GGCC	2 cut(s)	73, 244
BsiHKAI	GWGCWC	1 cut(s)	201
BsiSI	CCGG	2 cut(s)	8, 202
BsnI	GGCC	2 cut(s)	73, 244
Bsp1286I	GDGCHC	1 cut(s)	201
BspANI	GGCC	2 cut(s)	73, 244
BsrI	ACTGG	1 cut(s)	58
BssECI	CCNNGG	1 cut(s)	324
BssSI	CACGAG	1 cut(s)	238
Bst2BI	CACGAG	1 cut(s)	238
Bst4CI	ACNGT	1 cut(s)	30
BstDEI	CTNAG	1 cut(s)	167
BstSCI	CCNGG	1 cut(s)	7
BstV1I	GCAGC	1 cut(s)	111
BsuI	GTATCC	1 cut(s)	15
BsuRI	GGCC	2 cut(s)	73, 244
Cfr13I	GGNCC	1 cut(s)	71
CviJI	RGCY	8 cut(s)	59, 73, 199, 205, 244, 262, 338, 345
CviKI_1	RGCY	8 cut(s)	59, 73, 199, 205, 244, 262, 338, 345
DdeI	CTNAG	1 cut(s)	167
EaeI	YGGCCR	1 cut(s)	242
Ecl136II	GAGCTC	1 cut(s)	199
Eco24I	GRGCYC	1 cut(s)	201
Eco53kI	GAGCTC	1 cut(s)	199
EcoICRI	GAGCTC	1 cut(s)	199
EcoRI	GAATTC	1 cut(s)	179
EcoT38I	GRGCYC	1 cut(s)	201
FaiI	YATR	3 cut(s)	141, 277, 279
FblI	GTMKAC	1 cut(s)	91
Fnu4HI	GCNGC	1 cut(s)	100
FriOI	GRGCYC	1 cut(s)	201
Fsp4HI	GCNGC	1 cut(s)	100
FspBI	CTAG	2 cut(s)	75, 349
GluI	GCNGC	1 cut(s)	100
HaeIII	GGCC	2 cut(s)	73, 244
HapII	CCGG	2 cut(s)	8, 202
HincII	GTYRAC	1 cut(s)	110
HindII	GTYRAC	1 cut(s)	110
HinfI	GANTC	2 cut(s)	163, 291
HpaII	CCGG	2 cut(s)	8, 202
HphI	GGTGA	1 cut(s)	172
Hpy166II	GTNNAC	3 cut(s)	92, 110, 215
Hpy188I	TCNGA	3 cut(s)	185, 303, 325
Hpy8I	GTNNAC	3 cut(s)	92, 110, 215
HpyAV	CCTTC	1 cut(s)	180
HpyCH4III	ACNGT	1 cut(s)	30
HpyCH4V	TGCA	1 cut(s)	149
HpyF3I	CTNAG	1 cut(s)	167
LmnI	GCTCC	1 cut(s)	204
LpnPI	CCDG	7 cut(s)	21, 39, 134, 215, 244, 271, 280
Lsp1109I	GCAGC	1 cut(s)	111
MaeI	CTAG	2 cut(s)	75, 349
MhlI	GDGCHC	1 cut(s)	201
MlsI	TGGCCA	1 cut(s)	244
MluCI	AATT	3 cut(s)	18, 39, 179
MluNI	TGGCCA	1 cut(s)	244
MnlI	CCTC	4 cut(s)	151, 233, 247, 319
Mox20I	TGGCCA	1 cut(s)	244
MscI	TGGCCA	1 cut(s)	244
MseI	TTAA	3 cut(s)	21, 83, 114
Msp20I	TGGCCA	1 cut(s)	244
MspI	CCGG	2 cut(s)	8, 202
MspR9I	CCNGG	1 cut(s)	9
NciI	CCSGG	1 cut(s)	9
PfeI	GAWTC	2 cut(s)	163, 291
PkrI	GCNGC	1 cut(s)	101
Psp124BI	GAGCTC	1 cut(s)	201
PspPI	GGNCC	1 cut(s)	71
SacI	GAGCTC	1 cut(s)	201
SaqAI	TTAA	3 cut(s)	21, 83, 114
SatI	GCNGC	1 cut(s)	100
Sau96I	GGNCC	1 cut(s)	71
ScrFI	CCNGG	1 cut(s)	9
SduI	GDGCHC	1 cut(s)	201
SetI	ASST	9 cut(s)	162, 191, 201, 225, 233, 258, 264, 330, 347
Sse9I	AATT	3 cut(s)	18, 39, 179
SspI	AATATT	1 cut(s)	81
SspMI	CTAG	2 cut(s)	75, 349
SstI	GAGCTC	1 cut(s)	201
StyD4I	CCNGG	1 cut(s)	7
TaaI	ACNGT	1 cut(s)	30
TasI	AATT	3 cut(s)	18, 39, 179
TfiI	GAWTC	2 cut(s)	163, 291
Tru1I	TTAA	3 cut(s)	21, 83, 114
Tru9I	TTAA	3 cut(s)	21, 83, 114
TseI	GCWGC	1 cut(s)	99
TspDTI	ATGAA	1 cut(s)	264
XapI	RAATTY	1 cut(s)	179
XmiI	GTMKAC	1 cut(s)	91
XspI	CTAG	2 cut(s)	75, 349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.