pycom17g21280

RESISTANCE protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Forward (+)
19699375 .. 19699954
580 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g21280.1

Sequence Viewer

Length: 456 bp
ATGCTATCTGAGCTTTATTTGGGTGGCACTACAATTAAGGAACTGCCTGCGTTAGTTTTAAATTTCCTGTGTCTTGTTACTTTGATGCTGAATGATTGCAGAGAACTTGAGAGTCTTCCAAGCAGCATTTGTCACATGAAATCTCTTCGATACCTTGATGTTTCTGGATGCTCAAATCTTGAGACAGAACTTGAGAGTTGTTCAAGCATCATTTCTCACATGAAATCTCTTGAAAATCTTAATGATTCTGGATGCTCAAATGTTGAGAAATTTCATTCACATTTTCTAGCGGTTGCCACAGCTATTGCATTAGTAATTGCTAGCACCAACCTGTTTTTCCAATTTGCAATAATTAATTCTACCATCTTTTGTTTTTGTTTTACTAAAATAAGGTTGATTTATTTTAAATTAAATCGAAACAATTGGAAGACTCATGGCATTATGTGTGTAGCTTAG

Protein Analysis

152

Amino Acids

16.94

Weight (kDa)

6.49

Isoelectric Point (pI)

22.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 5 - 85 1.6e-08 Leucine-rich repeat region
LRR_Zer-1 PF25013 21 - 80 6.8e-06 Zer-1-like, Leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0021194)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 290
AcsI RAATTY 2 cut(s) 61, 269
AgsI TTSAA 2 cut(s) 204, 233
AjuI GAANNNNNNNTTGG 2 cut(s) 320, 352
AluBI AGCT 3 cut(s) 13, 302, 452
AluI AGCT 3 cut(s) 13, 302, 452
Alw26I GTCTC 1 cut(s) 176
ApeKI GCWGC 1 cut(s) 123
ApoI RAATTY 2 cut(s) 61, 269
AseI ATTAAT 1 cut(s) 354
AsuNHI GCTAGC 1 cut(s) 320
BbsI GAAGAC 2 cut(s) 107, 434
BbvI GCAGC 1 cut(s) 135
BccI CCATC 1 cut(s) 371
BcoDI GTCTC 1 cut(s) 176
BfaI CTAG 2 cut(s) 287, 321
BisI GCNGC 1 cut(s) 124
BlsI GCNGC 1 cut(s) 125
BmsI GCATC 4 cut(s) 75, 158, 216, 242
BmtI GCTAGC 1 cut(s) 324
BpiI GAAGAC 2 cut(s) 107, 434
BpuEI CTTGAG 3 cut(s) 128, 200, 212
BseGI GGATG 2 cut(s) 173, 257
BseXI GCAGC 1 cut(s) 135
BsmAI GTCTC 1 cut(s) 176
BspACI CCGC 1 cut(s) 290
BspOI GCTAGC 1 cut(s) 324
Bst6I CTCTTC 1 cut(s) 150
BstC8I GCNNGC 2 cut(s) 48, 322
BstDEI CTNAG 2 cut(s) 9, 453
BstF5I GGATG 2 cut(s) 173, 257
BstMAI GTCTC 1 cut(s) 176
BstMWI GCNNNNNNNGC 1 cut(s) 10
BstV1I GCAGC 1 cut(s) 135
BstV2I GAAGAC 2 cut(s) 107, 434
BtsCI GGATG 2 cut(s) 173, 257
Cac8I GCNNGC 2 cut(s) 48, 322
CspCI CAANNNNNGTGG 2 cut(s) 286, 321
CviAII CATG 3 cut(s) 136, 220, 434
CviJI RGCY 3 cut(s) 13, 302, 452
CviKI_1 RGCY 3 cut(s) 13, 302, 452
DdeI CTNAG 2 cut(s) 9, 453
DraI TTTAAA 2 cut(s) 60, 406
Eam1104I CTCTTC 1 cut(s) 150
EarI CTCTTC 1 cut(s) 150
FaeI CATG 3 cut(s) 139, 223, 437
FaiI YATR 4 cut(s) 137, 221, 435, 443
FatI CATG 3 cut(s) 135, 219, 433
Fnu4HI GCNGC 1 cut(s) 124
FokI GGATG 2 cut(s) 180, 264
Fsp4HI GCNGC 1 cut(s) 124
FspBI CTAG 2 cut(s) 287, 321
GluI GCNGC 1 cut(s) 124
Hin1II CATG 3 cut(s) 139, 223, 437
HinfI GANTC 3 cut(s) 112, 245, 430
Hpy188I TCNGA 1 cut(s) 10
Hpy188III TCNNGA 4 cut(s) 165, 179, 230, 249
HpyCH4V TGCA 3 cut(s) 99, 308, 347
HpyF10VI GCNNNNNNNGC 1 cut(s) 10
HpyF3I CTNAG 2 cut(s) 9, 453
Hsp92II CATG 3 cut(s) 139, 223, 437
LpnPI CCDG 5 cut(s) 60, 80, 150, 234, 344
Lsp1109I GCAGC 1 cut(s) 135
LweI GCATC 4 cut(s) 75, 158, 216, 242
MaeI CTAG 2 cut(s) 287, 321
MaeIII GTNAC 2 cut(s) 76, 131
MboII GAAGA 3 cut(s) 107, 137, 439
MfeI CAATTG 1 cut(s) 421
MluCI AATT 9 cut(s) 33, 61, 269, 315, 341, 351, 355, 407, 421
MlyI GAGTC 2 cut(s) 121, 424
MseI TTAA 6 cut(s) 36, 59, 240, 354, 405, 410
MunI CAATTG 1 cut(s) 421
MwoI GCNNNNNNNGC 1 cut(s) 10
NheI GCTAGC 1 cut(s) 320
NlaIII CATG 3 cut(s) 139, 223, 437
NmuCI GTSAC 1 cut(s) 131
PfeI GAWTC 1 cut(s) 245
PkrI GCNGC 1 cut(s) 125
PleI GAGTC 2 cut(s) 120, 424
PpsI GAGTC 2 cut(s) 120, 424
PshBI ATTAAT 1 cut(s) 354
SaqAI TTAA 6 cut(s) 36, 59, 240, 354, 405, 410
SatI GCNGC 1 cut(s) 124
SchI GAGTC 2 cut(s) 121, 424
SetI ASST 6 cut(s) 15, 156, 304, 333, 395, 454
SfaNI GCATC 4 cut(s) 75, 158, 216, 242
SmlI CTYRAG 3 cut(s) 107, 179, 191
SmoI CTYRAG 3 cut(s) 107, 179, 191
Sse9I AATT 9 cut(s) 33, 61, 269, 315, 341, 351, 355, 407, 421
SsiI CCGC 1 cut(s) 290
SspMI CTAG 2 cut(s) 287, 321
TaqI TCGA 2 cut(s) 148, 415
TasI AATT 9 cut(s) 33, 61, 269, 315, 341, 351, 355, 407, 421
TfiI GAWTC 1 cut(s) 245
Tru1I TTAA 6 cut(s) 36, 59, 240, 354, 405, 410
Tru9I TTAA 6 cut(s) 36, 59, 240, 354, 405, 410
TseFI GTSAC 1 cut(s) 131
TseI GCWGC 1 cut(s) 123
Tsp45I GTSAC 1 cut(s) 131
TspDTI ATGAA 3 cut(s) 152, 236, 263
VspI ATTAAT 1 cut(s) 354
XapI RAATTY 2 cut(s) 61, 269
XspI CTAG 2 cut(s) 287, 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.