MD00G1049400.v1.1

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0020368
Physical Location & Seq
Forward (+)
9291022 .. 9291972
951 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1049400.v1.1.491

Sequence Viewer

Length: 951 bp
ATGGCTGTTCCTCCACCTCGCGGCCTCATACCAGTCTACGCCACTCTACTCGACGGCTGCAGTTCGTCCAAGAACCTCCGAACCCTCACGCAGCTCCACGCTAAAACCATAAAACTCGGCATTTCCCGCCACGACTTCATTCGAACGAAGCTCCTCTGCTCCTACGCCGCTTCCTCCCAACTGAAGCAATCCAACCTTCTCTTCTCCTTCTGCACTAGCCGACCAACCTTCATATTCAACACCCTCATCAGAGCCCACTCTTCCCAAGGCCTCTTTTCTCAGTCTCTGTCCATTTTTCTCCGAATGCTCGCCGCCAATAAACCCTTCGACCGCCATACCTTGCCTGCGGTTCTCAAATCTTGTGCCGGGTTATCGGTGTTGAGGCTCGGCAAACAAGTTCATGGAGCTGTTTTGGTCAATGGGTTTGGCTTTGACTTGGCGAATTCGAATGCGTTGATTAGTATGTATGCCAAGTGTAGTGATTTGGCGGGTGCCCATAAAGTGTTTGACGGAATGCTAATGAGGAATGAGATTTCTTGGTCGGCAATTATGGCGGGGTATGGGATGCATGGAGTGTTTAATGAGGTGTTTGAGTTGTTTGATAGGATGGTGGAGGCAGGAGAAAGGCCGGACGGGGTGACTTTCACTACGGTTTTGACAGCGTGTAGTCATGGAGGGCTGACAGAGAAGGGAAGGGAGTATTTTGAAATGATGAAGCAGAGGTTCGGGGTGATTCCCGGGTTGGAACATTATACCTGTATGGTGGATTTGTTGGGTAGGGTGGGACGGGTGGATGAAGCAGAGGAATTAGTTTTGGGGATGGCGGTGGAGCCGGATGAGGCATTATGGGGTGCATTGTTGGGGGCTTGTAGGATTCACGGGAAGGTAGAGGTGGCTGAGAGAGTGGAAGAGATGCTTCATGGAAGGCGACCTAGTGTAGCATCTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR

Protein Analysis

317

Amino Acids

34.66

Weight (kDa)

8.61

Isoelectric Point (pI)

41.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 176 - 223 8e-10 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020368)

Species Orthologous Gene IDs
malus_domestica MD00G1049400.v1.1 MD00G1071500.v1.1 MD03G1154400.v1.1
prunus_persica Prupe.6G143600_v2.0.a1
pyrus_communis pycom03g10820 pycom11g14670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 491
AccI GTMKAC 1 cut(s) 36
AccII CGCG 1 cut(s) 21
AciI CCGC 9 cut(s) 21, 127, 168, 312, 331, 347, 488, 554, 824
AcsI RAATTY 1 cut(s) 442
AcuI CTGAAG 1 cut(s) 203
AfiI CCNNNNNNNGG 1 cut(s) 20
AgsI TTSAA 2 cut(s) 238, 707
AjuI GAANNNNNNNTTGG 4 cut(s) 185, 217, 308, 340
AluBI AGCT 3 cut(s) 94, 151, 407
AluI AGCT 3 cut(s) 94, 151, 407
Alw26I GTCTC 1 cut(s) 288
AlwNI CAGNNNCTG 1 cut(s) 286
Ama87I CYCGRG 1 cut(s) 737
AoxI GGCC 3 cut(s) 22, 268, 626
ApeKI GCWGC 2 cut(s) 57, 91
ApoI RAATTY 1 cut(s) 442
AsuC2I CCSGG 3 cut(s) 367, 738, 739
AsuHPI GGTGA 2 cut(s) 649, 742
AsuII TTCGAA 2 cut(s) 142, 446
AvaI CYCGRG 1 cut(s) 737
BaeGI GKGCMC 1 cut(s) 496
BanI GGYRCC 1 cut(s) 491
BanII GRGCYC 1 cut(s) 256
BbvI GCAGC 2 cut(s) 44, 103
BccI CCATC 2 cut(s) 601, 814
BceAI ACGGC 1 cut(s) 70
BcnI CCSGG 3 cut(s) 367, 738, 739
BcoDI GTCTC 1 cut(s) 288
BfaI CTAG 2 cut(s) 216, 933
BfmI CTRYAG 1 cut(s) 58
BisI GCNGC 5 cut(s) 22, 58, 92, 168, 312
BlsI GCNGC 5 cut(s) 23, 59, 93, 169, 313
Bme1390I CCNGG 3 cut(s) 367, 738, 739
BmeT110I CYCGRG 1 cut(s) 737
BmiI GGNNCC 2 cut(s) 493, 831
BmrFI CCNGG 3 cut(s) 367, 738, 739
BmsI GCATC 2 cut(s) 555, 903
Bpu14I TTCGAA 2 cut(s) 142, 446
BpuMI CCSGG 3 cut(s) 367, 738, 739
BsaJI CCNNGG 2 cut(s) 265, 737
Bsc4I CCNNNNNNNGG 1 cut(s) 20
Bse1I ACTGG 1 cut(s) 32
BseDI CCNNGG 2 cut(s) 265, 737
BseGI GGATG 5 cut(s) 570, 612, 799, 825, 841
BseLI CCNNNNNNNGG 1 cut(s) 20
BseMII CTCAG 2 cut(s) 293, 888
BseNI ACTGG 1 cut(s) 32
BseRI GAGGAG 1 cut(s) 143
BseSI GKGCMC 1 cut(s) 496
BseXI GCAGC 2 cut(s) 44, 103
BsgI GTGCAG 1 cut(s) 196
Bsh1236I CGCG 1 cut(s) 21
Bsh1285I CGRYCG 1 cut(s) 331
BshFI GGCC 3 cut(s) 24, 270, 628
BshNI GGYRCC 1 cut(s) 491
BsiEI CGRYCG 1 cut(s) 331
BsiHKCI CYCGRG 1 cut(s) 737
BsiSI CCGG 4 cut(s) 366, 629, 738, 833
BslFI GGGAC 1 cut(s) 798
BslI CCNNNNNNNGG 1 cut(s) 20
BsmAI GTCTC 1 cut(s) 288
BsmFI GGGAC 1 cut(s) 798
BsmI GAATGC 3 cut(s) 309, 454, 519
BsnI GGCC 3 cut(s) 24, 270, 628
BsoBI CYCGRG 1 cut(s) 737
Bsp119I TTCGAA 2 cut(s) 142, 446
Bsp1286I GDGCHC 2 cut(s) 256, 496
BspACI CCGC 9 cut(s) 21, 127, 168, 312, 331, 347, 488, 554, 824
BspANI GGCC 3 cut(s) 24, 270, 628
BspCNI CTCAG 2 cut(s) 292, 889
BspFNI CGCG 1 cut(s) 21
BspLI GGNNCC 2 cut(s) 493, 831
BspMAI CTGCAG 1 cut(s) 62
BspT104I TTCGAA 2 cut(s) 142, 446
BspT107I GGYRCC 1 cut(s) 491
BsrI ACTGG 1 cut(s) 32
BssECI CCNNGG 2 cut(s) 265, 737
BssT1I CCWWGG 1 cut(s) 265
Bst4CI ACNGT 1 cut(s) 652
Bst6I CTCTTC 3 cut(s) 206, 265, 903
BstBI TTCGAA 2 cut(s) 142, 446
BstC8I GCNNGC 2 cut(s) 309, 345
BstDEI CTNAG 2 cut(s) 279, 897
BstF5I GGATG 5 cut(s) 570, 612, 799, 825, 841
BstFNI CGCG 1 cut(s) 21
BstMAI GTCTC 1 cut(s) 288
BstMCI CGRYCG 1 cut(s) 331
BstMWI GCNNNNNNNGC 2 cut(s) 126, 551
BstSCI CCNGG 3 cut(s) 365, 736, 737
BstSFI CTRYAG 1 cut(s) 58
BstSLI GKGCMC 1 cut(s) 496
BstUI CGCG 1 cut(s) 21
BstV1I GCAGC 2 cut(s) 44, 103
BsuRI GGCC 3 cut(s) 24, 270, 628
BtsCI GGATG 5 cut(s) 570, 612, 799, 825, 841
Cac8I GCNNGC 2 cut(s) 309, 345
CaiI CAGNNNCTG 1 cut(s) 286
Cfr9I CCCGGG 1 cut(s) 737
CviAII CATG 4 cut(s) 401, 569, 671, 920
DdeI CTNAG 2 cut(s) 279, 897
Eam1104I CTCTTC 3 cut(s) 206, 265, 903
EarI CTCTTC 3 cut(s) 206, 265, 903
Eco130I CCWWGG 1 cut(s) 265
Eco147I AGGCCT 1 cut(s) 270
Eco24I GRGCYC 1 cut(s) 256
Eco57I CTGAAG 1 cut(s) 203
Eco88I CYCGRG 1 cut(s) 737
EcoRI GAATTC 1 cut(s) 442
EcoT14I CCWWGG 1 cut(s) 265
EcoT22I ATGCAT 1 cut(s) 570
EcoT38I GRGCYC 1 cut(s) 256
ErhI CCWWGG 1 cut(s) 265
FaeI CATG 4 cut(s) 404, 572, 674, 923
FalI AAGNNNNNCTT 2 cut(s) 900, 932
FaqI GGGAC 1 cut(s) 798
FatI CATG 4 cut(s) 400, 568, 670, 919
FauI CCCGC 3 cut(s) 134, 481, 547
FblI GTMKAC 1 cut(s) 36
Fnu4HI GCNGC 5 cut(s) 22, 58, 92, 168, 312
FokI GGATG 5 cut(s) 577, 619, 806, 832, 848
FriOI GRGCYC 1 cut(s) 256
Fsp4HI GCNGC 5 cut(s) 22, 58, 92, 168, 312
FspBI CTAG 2 cut(s) 216, 933
GluI GCNGC 5 cut(s) 22, 58, 92, 168, 312
HaeIII GGCC 3 cut(s) 24, 270, 628
HapII CCGG 4 cut(s) 366, 629, 738, 833
Hin1II CATG 4 cut(s) 404, 572, 674, 923
HinfI GANTC 2 cut(s) 733, 874
HpaII CCGG 4 cut(s) 366, 629, 738, 833
HphI GGTGA 2 cut(s) 649, 742
Hpy166II GTNNAC 1 cut(s) 37
Hpy188I TCNGA 3 cut(s) 80, 251, 302
Hpy8I GTNNAC 1 cut(s) 37
Hpy99I CGWCG 1 cut(s) 56
HpyAV CCTTC 8 cut(s) 206, 217, 238, 334, 682, 687, 877, 918
HpyCH4III ACNGT 1 cut(s) 652
HpyCH4V TGCA 4 cut(s) 60, 213, 568, 854
HpyF10VI GCNNNNNNNGC 2 cut(s) 126, 551
HpyF3I CTNAG 2 cut(s) 279, 897
Hsp92II CATG 4 cut(s) 404, 572, 674, 923
LmnI GCTCC 5 cut(s) 99, 156, 164, 404, 829
LpnPI CCDG 8 cut(s) 45, 357, 379, 603, 642, 751, 769, 846
Lsp1109I GCAGC 2 cut(s) 44, 103
LweI GCATC 2 cut(s) 555, 903
MaeI CTAG 2 cut(s) 216, 933
MaeIII GTNAC 1 cut(s) 637
MboII GAAGA 3 cut(s) 193, 252, 920
MhlI GDGCHC 2 cut(s) 256, 496
MluCI AATT 3 cut(s) 442, 546, 806
MmeI TCCRAC 2 cut(s) 216, 723
Mph1103I ATGCAT 1 cut(s) 570
MseI TTAA 1 cut(s) 579
MspI CCGG 4 cut(s) 366, 629, 738, 833
MspR9I CCNGG 3 cut(s) 367, 738, 739
Mva1269I GAATGC 3 cut(s) 309, 454, 519
MvnI CGCG 1 cut(s) 21
MwoI GCNNNNNNNGC 2 cut(s) 126, 551
NciI CCSGG 3 cut(s) 367, 738, 739
NlaIII CATG 4 cut(s) 404, 572, 674, 923
NlaIV GGNNCC 2 cut(s) 493, 831
NmeAIII GCCGAG 2 cut(s) 96, 366
NmuCI GTSAC 1 cut(s) 637
NsiI ATGCAT 1 cut(s) 570
NspV TTCGAA 2 cut(s) 142, 446
PceI AGGCCT 1 cut(s) 270
PctI GAATGC 3 cut(s) 309, 454, 519
PfeI GAWTC 2 cut(s) 733, 874
PkrI GCNGC 5 cut(s) 23, 59, 93, 169, 313
PspN4I GGNNCC 2 cut(s) 493, 831
PstI CTGCAG 1 cut(s) 62
PstNI CAGNNNCTG 1 cut(s) 286
SaqAI TTAA 1 cut(s) 579
SatI GCNGC 5 cut(s) 22, 58, 92, 168, 312
ScrFI CCNGG 3 cut(s) 367, 738, 739
SduI GDGCHC 2 cut(s) 256, 496
SfaNI GCATC 2 cut(s) 555, 903
SfcI CTRYAG 1 cut(s) 58
SfuI TTCGAA 2 cut(s) 142, 446
SmaI CCCGGG 1 cut(s) 739
Sse9I AATT 3 cut(s) 442, 546, 806
SseBI AGGCCT 1 cut(s) 270
SsiI CCGC 9 cut(s) 21, 127, 168, 312, 331, 347, 488, 554, 824
SspMI CTAG 2 cut(s) 216, 933
StuI AGGCCT 1 cut(s) 270
StyD4I CCNGG 3 cut(s) 365, 736, 737
StyI CCWWGG 1 cut(s) 265
TaaI ACNGT 1 cut(s) 652
TaqI TCGA 4 cut(s) 51, 142, 327, 446
TasI AATT 3 cut(s) 442, 546, 806
TauI GCSGC 3 cut(s) 24, 170, 314
TfiI GAWTC 2 cut(s) 733, 874
Tru1I TTAA 1 cut(s) 579
Tru9I TTAA 1 cut(s) 579
TseFI GTSAC 1 cut(s) 637
TseI GCWGC 2 cut(s) 57, 91
Tsp45I GTSAC 1 cut(s) 637
TspDTI ATGAA 6 cut(s) 127, 220, 389, 728, 810, 908
TspGWI ACGGA 1 cut(s) 525
TspMI CCCGGG 1 cut(s) 737
XapI RAATTY 1 cut(s) 442
XmaI CCCGGG 1 cut(s) 737
XmiI GTMKAC 1 cut(s) 36
XspI CTAG 2 cut(s) 216, 933
Zsp2I ATGCAT 1 cut(s) 570
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.