pycom03g10820

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0020368
Physical Location & Seq
Forward (+)
10169214 .. 10170173
960 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g10820.1

Sequence Viewer

Length: 960 bp
ATGGGTGTTCCTCCACCTCGCGGCCTCATAGTATTCTACGCCACTCTACTCGAGGCCTGCAGTTCGTCGAAGAACCTCCAAACCCTCACGCAACTCCACGCTAAAACTATCAAACTCGGCATTTCCGGCCACGACTTCATCCGAACCAAGCTTCTCAGCTCCTACGCCGCCGCTGCCCAACTGAAGCAAGCCAACCTGCTTTTCTCCTTCTGTACTCGCCGACCCACCTTCCTCTTCAACACCCTCATCAGAGCCCACTCTTCGCAAGGCCTCTTCTCTCAGTCTCTGTCCATTTTTCTCCGTATGCTTGCCGCCAATAAACGCTGGGACCGCCATACCTTGCCTGCGGTTCTCAAATCTTGTGCCGGGTTATCGGTGTTGAGGCTTGGAAAACAAATGCATGGAGCTGTTTTGGTTAATGGGTTTGGCTTCGATTTGGCGAACTCAAATGCGTTGATTAGTATGTATGCGAAGTGTGGTGATTTGGTGGGTGCCCGTAAAGTGTTTGACGGAATGCTGATGAGGAATGAGATTTCTTGGTCGGCAATTATGGCGGGGTATGGGATGTATGGAGTATTTGGCGAGGTGTTTGAGCTGTTTGGTAGGATGGTGGAGGCAGGAGAGAGGCCGGATGGAGTGACTTTCACTACGATTTTGACAGCGTGTAGTCATGGAGGGCTGACAGAGAAGGGGAGGGAGTATTTTGAAATGATGGAGCGGAGGTTCGGGGTGATGCCCGGGCTGGAGCATTATACCTGTTTGGTGGATTTGTTGGGTAGGGTGGGACGGGTAGAGGAAGCAGAGGAGTTGGTTTTGGGGATGGCAGTGGAGCCAGATGAGGCATTATGGGGCGCATTGTTGGGTGCTTGTAGGATTCATGGGAAGGTAGAGGTGGCTGAGAGAGTGGAAGCGATGCTTTATGGAAAGCAACTTGGTGTAGCATCTCTGCGAGGCATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR

Protein Analysis

320

Amino Acids

34.94

Weight (kDa)

8.95

Isoelectric Point (pI)

43.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 176 - 223 8.8e-08 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020368)

Species Orthologous Gene IDs
malus_domestica MD00G1049400.v1.1 MD00G1071500.v1.1 MD03G1154400.v1.1
prunus_persica Prupe.6G143600_v2.0.a1
pyrus_communis pycom03g10820 pycom11g14670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 204
AccB1I GGYRCC 1 cut(s) 491
AccBSI CCGCTC 1 cut(s) 718
AccII CGCG 1 cut(s) 21
AciI CCGC 8 cut(s) 21, 168, 171, 312, 331, 347, 554, 718
AcoI YGGCCR 1 cut(s) 127
AcuI CTGAAG 1 cut(s) 203
AfaI GTAC 1 cut(s) 214
AfiI CCNNNNNNNGG 1 cut(s) 20
AgsI TTSAA 2 cut(s) 238, 707
AjuI GAANNNNNNNTTGG 2 cut(s) 185, 217
AloI GAACNNNNNNTCC 2 cut(s) 707, 739
AluBI AGCT 4 cut(s) 151, 159, 407, 595
AluI AGCT 4 cut(s) 151, 159, 407, 595
Alw26I GTCTC 1 cut(s) 288
AlwNI CAGNNNCTG 1 cut(s) 286
Ama87I CYCGRG 2 cut(s) 50, 737
AoxI GGCC 5 cut(s) 22, 54, 127, 268, 626
ApeKI GCWGC 1 cut(s) 173
AspLEI GCGC 1 cut(s) 854
AspS9I GGNCC 1 cut(s) 328
AsuC2I CCSGG 3 cut(s) 367, 738, 739
AsuHPI GGTGA 2 cut(s) 491, 742
AvaI CYCGRG 2 cut(s) 50, 737
AvaII GGWCC 1 cut(s) 328
BaeGI GKGCMC 1 cut(s) 496
BanI GGYRCC 1 cut(s) 491
BanII GRGCYC 1 cut(s) 256
BbvI GCAGC 1 cut(s) 160
BccI CCATC 4 cut(s) 601, 626, 706, 814
BcnI CCSGG 3 cut(s) 367, 738, 739
BcoDI GTCTC 1 cut(s) 288
BfmI CTRYAG 1 cut(s) 58
BfuAI ACCTGC 1 cut(s) 204
BisI GCNGC 5 cut(s) 22, 168, 171, 174, 312
BlsI GCNGC 5 cut(s) 23, 169, 172, 175, 313
Bme1390I CCNGG 3 cut(s) 367, 738, 739
Bme18I GGWCC 1 cut(s) 328
BmeT110I CYCGRG 2 cut(s) 50, 737
BmgT120I GGNCC 1 cut(s) 328
BmiI GGNNCC 3 cut(s) 329, 493, 831
BmrFI CCNGG 3 cut(s) 367, 738, 739
BmsI GCATC 3 cut(s) 723, 903, 950
BpmI CTGGAG 1 cut(s) 764
BpuMI CCSGG 3 cut(s) 367, 738, 739
BsaJI CCNNGG 1 cut(s) 737
BsaXI ACNNNNNCTCC 2 cut(s) 707, 737
Bsc4I CCNNNNNNNGG 1 cut(s) 20
BseDI CCNNGG 1 cut(s) 737
BseGI GGATG 5 cut(s) 138, 570, 612, 637, 825
BseLI CCNNNNNNNGG 1 cut(s) 20
BseMII CTCAG 3 cut(s) 169, 293, 888
BseRI GAGGAG 1 cut(s) 818
BseSI GKGCMC 1 cut(s) 496
BseXI GCAGC 1 cut(s) 160
BseYI CCCAGC 1 cut(s) 324
Bsh1236I CGCG 1 cut(s) 21
BshFI GGCC 5 cut(s) 24, 56, 129, 270, 628
BshNI GGYRCC 1 cut(s) 491
BsiHKCI CYCGRG 2 cut(s) 50, 737
BsiSI CCGG 4 cut(s) 126, 366, 629, 738
BslFI GGGAC 2 cut(s) 341, 798
BslI CCNNNNNNNGG 1 cut(s) 20
BsmAI GTCTC 1 cut(s) 288
BsmFI GGGAC 2 cut(s) 341, 798
BsmI GAATGC 1 cut(s) 519
BsnI GGCC 5 cut(s) 24, 56, 129, 270, 628
BsoBI CYCGRG 2 cut(s) 50, 737
Bsp1286I GDGCHC 2 cut(s) 256, 496
BspACI CCGC 8 cut(s) 21, 168, 171, 312, 331, 347, 554, 718
BspANI GGCC 5 cut(s) 24, 56, 129, 270, 628
BspCNI CTCAG 3 cut(s) 168, 292, 889
BspFNI CGCG 1 cut(s) 21
BspLI GGNNCC 3 cut(s) 329, 493, 831
BspMAI CTGCAG 1 cut(s) 62
BspMI ACCTGC 1 cut(s) 204
BspT107I GGYRCC 1 cut(s) 491
BsrBI CCGCTC 1 cut(s) 718
BssECI CCNNGG 1 cut(s) 737
Bst6I CTCTTC 3 cut(s) 239, 265, 278
BstC8I GCNNGC 4 cut(s) 58, 189, 309, 345
BstDEI CTNAG 3 cut(s) 155, 279, 897
BstF5I GGATG 5 cut(s) 138, 570, 612, 637, 825
BstFNI CGCG 1 cut(s) 21
BstHHI GCGC 1 cut(s) 854
BstMAI GTCTC 1 cut(s) 288
BstMWI GCNNNNNNNGC 4 cut(s) 126, 173, 330, 551
BstSCI CCNGG 3 cut(s) 365, 736, 737
BstSFI CTRYAG 1 cut(s) 58
BstSLI GKGCMC 1 cut(s) 496
BstUI CGCG 1 cut(s) 21
BstV1I GCAGC 1 cut(s) 160
BsuRI GGCC 5 cut(s) 24, 56, 129, 270, 628
BtgZI GCGATG 1 cut(s) 926
BtsCI GGATG 5 cut(s) 138, 570, 612, 637, 825
BtsI GCAGTG 1 cut(s) 831
BtsIMutI CAGTG 1 cut(s) 831
BveI ACCTGC 1 cut(s) 204
Cac8I GCNNGC 4 cut(s) 58, 189, 309, 345
CaiI CAGNNNCTG 1 cut(s) 286
CfoI GCGC 1 cut(s) 854
Cfr13I GGNCC 1 cut(s) 328
Cfr9I CCCGGG 1 cut(s) 737
Csp6I GTAC 1 cut(s) 213
CviAII CATG 3 cut(s) 401, 671, 878
CviQI GTAC 1 cut(s) 213
DdeI CTNAG 3 cut(s) 155, 279, 897
EaeI YGGCCR 1 cut(s) 127
Eam1104I CTCTTC 3 cut(s) 239, 265, 278
EarI CTCTTC 3 cut(s) 239, 265, 278
Eco147I AGGCCT 2 cut(s) 56, 270
Eco24I GRGCYC 1 cut(s) 256
Eco47I GGWCC 1 cut(s) 328
Eco57I CTGAAG 1 cut(s) 203
Eco88I CYCGRG 2 cut(s) 50, 737
EcoT22I ATGCAT 1 cut(s) 402
EcoT38I GRGCYC 1 cut(s) 256
FaeI CATG 3 cut(s) 404, 674, 881
FalI AAGNNNNNCTT 2 cut(s) 900, 932
FaqI GGGAC 2 cut(s) 341, 798
FatI CATG 3 cut(s) 400, 670, 877
FauI CCCGC 1 cut(s) 547
Fnu4HI GCNGC 5 cut(s) 22, 168, 171, 174, 312
FokI GGATG 5 cut(s) 125, 577, 619, 644, 832
FriOI GRGCYC 1 cut(s) 256
Fsp4HI GCNGC 5 cut(s) 22, 168, 171, 174, 312
GlaI GCGC 1 cut(s) 853
GluI GCNGC 5 cut(s) 22, 168, 171, 174, 312
GsaI CCCAGC 1 cut(s) 328
GsuI CTGGAG 1 cut(s) 764
HaeIII GGCC 5 cut(s) 24, 56, 129, 270, 628
HapII CCGG 4 cut(s) 126, 366, 629, 738
HhaI GCGC 1 cut(s) 854
Hin1II CATG 3 cut(s) 404, 674, 881
Hin6I GCGC 1 cut(s) 852
HinP1I GCGC 1 cut(s) 852
HindIII AAGCTT 1 cut(s) 149
HinfI GANTC 1 cut(s) 874
HpaII CCGG 4 cut(s) 126, 366, 629, 738
HphI GGTGA 2 cut(s) 491, 742
Hpy188I TCNGA 2 cut(s) 143, 251
Hpy99I CGWCG 1 cut(s) 70
HpyAV CCTTC 4 cut(s) 217, 238, 682, 877
HpyCH4V TGCA 2 cut(s) 60, 400
HpyF10VI GCNNNNNNNGC 4 cut(s) 126, 173, 330, 551
HpyF3I CTNAG 3 cut(s) 155, 279, 897
Hsp92II CATG 3 cut(s) 404, 674, 881
HspAI GCGC 1 cut(s) 852
LmnI GCTCC 5 cut(s) 164, 404, 715, 745, 829
Lsp1109I GCAGC 1 cut(s) 160
LweI GCATC 3 cut(s) 723, 903, 950
MaeIII GTNAC 1 cut(s) 637
MbiI CCGCTC 1 cut(s) 718
MboII GAAGA 4 cut(s) 82, 226, 252, 265
MhlI GDGCHC 2 cut(s) 256, 496
MluCI AATT 1 cut(s) 546
Mph1103I ATGCAT 1 cut(s) 402
MseI TTAA 2 cut(s) 417, 958
MspA1I CMGCKG 1 cut(s) 173
MspI CCGG 4 cut(s) 126, 366, 629, 738
MspR9I CCNGG 3 cut(s) 367, 738, 739
Mva1269I GAATGC 1 cut(s) 519
MvnI CGCG 1 cut(s) 21
MwoI GCNNNNNNNGC 4 cut(s) 126, 173, 330, 551
NciI CCSGG 3 cut(s) 367, 738, 739
NlaIII CATG 3 cut(s) 404, 674, 881
NlaIV GGNNCC 3 cut(s) 329, 493, 831
NmeAIII GCCGAG 1 cut(s) 96
NmuCI GTSAC 1 cut(s) 637
NsiI ATGCAT 1 cut(s) 402
PaeR7I CTCGAG 1 cut(s) 50
PceI AGGCCT 2 cut(s) 56, 270
PctI GAATGC 1 cut(s) 519
PfeI GAWTC 1 cut(s) 874
PkrI GCNGC 5 cut(s) 23, 169, 172, 175, 313
PspFI CCCAGC 1 cut(s) 324
PspN4I GGNNCC 3 cut(s) 329, 493, 831
PspPI GGNCC 1 cut(s) 328
PspXI VCTCGAGB 1 cut(s) 50
PstI CTGCAG 1 cut(s) 62
PstNI CAGNNNCTG 1 cut(s) 286
RsaI GTAC 1 cut(s) 214
RsaNI GTAC 1 cut(s) 213
SaqAI TTAA 2 cut(s) 417, 958
SatI GCNGC 5 cut(s) 22, 168, 171, 174, 312
Sau96I GGNCC 1 cut(s) 328
ScrFI CCNGG 3 cut(s) 367, 738, 739
SduI GDGCHC 2 cut(s) 256, 496
SfaNI GCATC 3 cut(s) 723, 903, 950
SfcI CTRYAG 1 cut(s) 58
Sfr274I CTCGAG 1 cut(s) 50
SinI GGWCC 1 cut(s) 328
SlaI CTCGAG 1 cut(s) 50
SmaI CCCGGG 1 cut(s) 739
SmlI CTYRAG 1 cut(s) 50
SmoI CTYRAG 1 cut(s) 50
SrfI GCCCGGGC 1 cut(s) 739
Sse9I AATT 1 cut(s) 546
SseBI AGGCCT 2 cut(s) 56, 270
SsiI CCGC 8 cut(s) 21, 168, 171, 312, 331, 347, 554, 718
StuI AGGCCT 2 cut(s) 56, 270
StyD4I CCNGG 3 cut(s) 365, 736, 737
TaqI TCGA 3 cut(s) 51, 68, 432
TasI AATT 1 cut(s) 546
TatI WGTACW 1 cut(s) 212
TauI GCSGC 4 cut(s) 24, 170, 173, 314
TfiI GAWTC 1 cut(s) 874
Tru1I TTAA 2 cut(s) 417, 958
Tru9I TTAA 2 cut(s) 417, 958
TscAI CASTG 1 cut(s) 831
TseFI GTSAC 1 cut(s) 637
TseI GCWGC 1 cut(s) 173
Tsp45I GTSAC 1 cut(s) 637
TspDTI ATGAA 2 cut(s) 127, 866
TspGWI ACGGA 2 cut(s) 290, 525
TspMI CCCGGG 1 cut(s) 737
TspRI CASTG 1 cut(s) 831
VpaK11BI GGWCC 1 cut(s) 328
XhoI CTCGAG 1 cut(s) 50
XmaI CCCGGG 1 cut(s) 737
Zsp2I ATGCAT 1 cut(s) 402
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.