Prupe.6G143600_v2.0.a1

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0020368
Physical Location & Seq
Forward (+)
11635708 .. 11637986
2279 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G143600.1

Sequence Viewer

Length: 957 bp
ATGCCTCCTCCTCGCGGCCTCATACCATTCTACGCCAATCTACTCGAAGCCTGCTCTTTGTCTAAGAATCTCCAAACCGTCAAACAGCTCCACGCTAAAACCATAAGACTCTGCATTTCCCGCCACGACTTCATTCGAACCAAGCTCGTTTTCTCCTATGCCTCATGTGCCCAACTGAACCAGGCCAACCTCCTCTTCTCCTTCTGCAATCGCCAATCGACCTTCCTCTTCAACACCCTCATTCGAGCCCATTCGTCCCAAGGTTTGTTCTCTCAATCTCTGTCCATTTTTATCCGCATGCTTGCTGCCATTAAAGCCTTTGACCGCCATACCTTGCCTGTGGTTCTCAAATCTTGTGCTGGGTTATTGGCATTGAGGCTTGGGAAGCAAGTACATGGAGCCATTTTGGTGAATGGGTTTGCCTTAGATTTGGCGAACTTGAATGCGTTGATCAGCATGTATGCCAAGTGTGGTGAATTGGTTGCTGCGCGTAAAGTGTTTGACGGAATGCTCATAAGAAATGAGATTTCTTGGTCAGCAATTTTGGCTGGGTATGGAATGCATGGAGTGTTTGGTGAGGTATTTGAATTGTTTGATAGGATGGTGGAAGCAGGAGAGAGGCCGGATGCAGTGACATTCACTACAATTTTGACAGCGTGTAGTCATGGCGGGTTCACAGAGAAGGGGAGGGAGTATTTTGGAATGATGGAGCAGAGGTTTGGGGTGAAGCCCAGGTTGGAGCATTATACATGTATGGTGGATATGTTAGGCAGGGTGGGACGGGTGGAGGAGGCAGAGGAGTTGGTTTTGGGGATGACAGTGGAACCAGATGCGGCATTATGGGGCGCATTGTTGGGCGCTTGTAGGATTCATGGGAAGGTAGAGGTAGCTGAGAGAGTGGAACAGATGCTCTATGGAAGGCTACTTGGTGTAGTATCTCTGAGGCATTTACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR

Protein Analysis

319

Amino Acids

35.33

Weight (kDa)

8.97

Isoelectric Point (pI)

40.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020368)

Species Orthologous Gene IDs
malus_domestica MD00G1049400.v1.1 MD00G1071500.v1.1 MD03G1154400.v1.1
prunus_persica Prupe.6G143600_v2.0.a1
pyrus_communis pycom03g10820 pycom11g14670

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 15, 490
AciI CCGC 6 cut(s) 15, 121, 295, 325, 669, 833
AfaI GTAC 1 cut(s) 393
AfiI CCNNNNNNNGG 1 cut(s) 14
AflIII ACRYGT 1 cut(s) 749
AgsI TTSAA 3 cut(s) 232, 442, 587
AjnI CCWGG 2 cut(s) 180, 731
AjuI GAANNNNNNNTTGG 6 cut(s) 134, 166, 179, 211, 719, 751
AluBI AGCT 3 cut(s) 88, 145, 890
AluI AGCT 3 cut(s) 88, 145, 890
AoxI GGCC 3 cut(s) 16, 183, 620
ApeKI GCWGC 2 cut(s) 305, 485
AspLEI GCGC 3 cut(s) 490, 848, 860
AsuHPI GGTGA 4 cut(s) 421, 485, 587, 736
AsuII TTCGAA 1 cut(s) 136
BaeGI GKGCMC 1 cut(s) 172
BanII GRGCYC 1 cut(s) 250
BbvI GCAGC 2 cut(s) 292, 472
BccI CCATC 2 cut(s) 595, 700
BciT130I CCWGG 2 cut(s) 182, 733
BclI TGATCA 1 cut(s) 450
BfoI RGCGCY 1 cut(s) 861
BisI GCNGC 4 cut(s) 16, 306, 486, 834
BlsI GCNGC 4 cut(s) 17, 307, 487, 835
Bme1390I CCNGG 2 cut(s) 182, 733
BmiI GGNNCC 2 cut(s) 400, 825
BmrFI CCNGG 2 cut(s) 182, 733
BmsI GCATC 3 cut(s) 616, 820, 897
Bpu14I TTCGAA 1 cut(s) 136
BsaJI CCNNGG 2 cut(s) 259, 731
BsaXI ACNNNNNCTCC 2 cut(s) 701, 731
Bsc4I CCNNNNNNNGG 1 cut(s) 14
BseBI CCWGG 2 cut(s) 182, 733
BseDI CCNNGG 2 cut(s) 259, 731
BseGI GGATG 3 cut(s) 606, 631, 819
BseLI CCNNNNNNNGG 1 cut(s) 14
BseMII CTCAG 2 cut(s) 882, 932
BseRI GAGGAG 3 cut(s) 182, 803, 812
BseSI GKGCMC 1 cut(s) 172
BseXI GCAGC 2 cut(s) 292, 472
BseYI CCCAGC 2 cut(s) 359, 548
Bsh1236I CGCG 2 cut(s) 15, 490
BshFI GGCC 3 cut(s) 18, 185, 622
BsiSI CCGG 1 cut(s) 623
BslFI GGGAC 2 cut(s) 241, 792
BslI CCNNNNNNNGG 1 cut(s) 14
BsmFI GGGAC 2 cut(s) 241, 792
BsmI GAATGC 3 cut(s) 448, 513, 564
BsnI GGCC 3 cut(s) 18, 185, 622
Bsp119I TTCGAA 1 cut(s) 136
Bsp1286I GDGCHC 2 cut(s) 172, 250
Bsp143I GATC 1 cut(s) 450
BspACI CCGC 6 cut(s) 15, 121, 295, 325, 669, 833
BspANI GGCC 3 cut(s) 18, 185, 622
BspCNI CTCAG 2 cut(s) 883, 933
BspFNI CGCG 2 cut(s) 15, 490
BspLI GGNNCC 2 cut(s) 400, 825
BspT104I TTCGAA 1 cut(s) 136
BssECI CCNNGG 2 cut(s) 259, 731
BssMI GATC 1 cut(s) 450
BssT1I CCWWGG 1 cut(s) 259
Bst2UI CCWGG 2 cut(s) 182, 733
Bst4CI ACNGT 3 cut(s) 79, 820, 954
Bst6I CTCTTC 2 cut(s) 200, 233
BstBI TTCGAA 1 cut(s) 136
BstC8I GCNNGC 3 cut(s) 52, 299, 303
BstDEI CTNAG 4 cut(s) 63, 424, 891, 941
BstF5I GGATG 3 cut(s) 606, 631, 819
BstFNI CGCG 2 cut(s) 15, 490
BstH2I RGCGCY 1 cut(s) 861
BstHHI GCGC 3 cut(s) 490, 848, 860
BstKTI GATC 1 cut(s) 453
BstMBI GATC 1 cut(s) 450
BstMWI GCNNNNNNNGC 5 cut(s) 120, 167, 314, 385, 545
BstNI CCWGG 2 cut(s) 182, 733
BstNSI RCATGY 3 cut(s) 301, 460, 753
BstSCI CCNGG 2 cut(s) 180, 731
BstSLI GKGCMC 1 cut(s) 172
BstUI CGCG 2 cut(s) 15, 490
BstV1I GCAGC 2 cut(s) 292, 472
BsuRI GGCC 3 cut(s) 18, 185, 622
BtsCI GGATG 3 cut(s) 606, 631, 819
BtsI GCAGTG 1 cut(s) 636
BtsIMutI CAGTG 2 cut(s) 636, 825
Cac8I GCNNGC 3 cut(s) 52, 299, 303
CfoI GCGC 3 cut(s) 490, 848, 860
Csp6I GTAC 1 cut(s) 392
CviAII CATG 8 cut(s) 165, 298, 395, 457, 563, 665, 750, 872
CviQI GTAC 1 cut(s) 392
DdeI CTNAG 4 cut(s) 63, 424, 891, 941
DpnI GATC 1 cut(s) 452
DpnII GATC 1 cut(s) 450
Eam1104I CTCTTC 2 cut(s) 200, 233
EarI CTCTTC 2 cut(s) 200, 233
Eco130I CCWWGG 1 cut(s) 259
Eco24I GRGCYC 1 cut(s) 250
EcoRII CCWGG 2 cut(s) 180, 731
EcoT14I CCWWGG 1 cut(s) 259
EcoT22I ATGCAT 1 cut(s) 564
EcoT38I GRGCYC 1 cut(s) 250
ErhI CCWWGG 1 cut(s) 259
FaeI CATG 8 cut(s) 168, 301, 398, 460, 566, 668, 753, 875
FaqI GGGAC 2 cut(s) 241, 792
FatI CATG 8 cut(s) 164, 297, 394, 456, 562, 664, 749, 871
FauI CCCGC 2 cut(s) 128, 662
FbaI TGATCA 1 cut(s) 450
Fnu4HI GCNGC 4 cut(s) 16, 306, 486, 834
FokI GGATG 3 cut(s) 613, 638, 826
FriOI GRGCYC 1 cut(s) 250
Fsp4HI GCNGC 4 cut(s) 16, 306, 486, 834
GlaI GCGC 3 cut(s) 489, 847, 859
GluI GCNGC 4 cut(s) 16, 306, 486, 834
GsaI CCCAGC 2 cut(s) 363, 552
HaeII RGCGCY 1 cut(s) 861
HaeIII GGCC 3 cut(s) 18, 185, 622
HapII CCGG 1 cut(s) 623
HhaI GCGC 3 cut(s) 490, 848, 860
Hin1II CATG 8 cut(s) 168, 301, 398, 460, 566, 668, 753, 875
Hin6I GCGC 3 cut(s) 488, 846, 858
HinP1I GCGC 3 cut(s) 488, 846, 858
HinfI GANTC 3 cut(s) 67, 108, 868
HpaII CCGG 1 cut(s) 623
HphI GGTGA 4 cut(s) 421, 485, 587, 736
Hpy166II GTNNAC 1 cut(s) 675
Hpy188I TCNGA 1 cut(s) 942
Hpy8I GTNNAC 1 cut(s) 675
HpyAV CCTTC 5 cut(s) 211, 232, 676, 871, 912
HpyCH4III ACNGT 3 cut(s) 79, 820, 954
HpyCH4V TGCA 4 cut(s) 114, 207, 562, 629
HpyF10VI GCNNNNNNNGC 5 cut(s) 120, 167, 314, 385, 545
HpyF3I CTNAG 4 cut(s) 63, 424, 891, 941
Hsp92II CATG 8 cut(s) 168, 301, 398, 460, 566, 668, 753, 875
HspAI GCGC 3 cut(s) 488, 846, 858
Ksp22I TGATCA 1 cut(s) 450
Kzo9I GATC 1 cut(s) 450
LmnI GCTCC 4 cut(s) 93, 398, 709, 739
Lsp1109I GCAGC 2 cut(s) 292, 472
LweI GCATC 3 cut(s) 616, 820, 897
MaeIII GTNAC 1 cut(s) 631
MalI GATC 1 cut(s) 452
MboI GATC 1 cut(s) 450
MboII GAAGA 2 cut(s) 187, 220
MhlI GDGCHC 2 cut(s) 172, 250
MluCI AATT 4 cut(s) 476, 540, 587, 645
MlyI GAGTC 1 cut(s) 102
MmeI TCCRAC 1 cut(s) 717
Mph1103I ATGCAT 1 cut(s) 564
MseI TTAA 1 cut(s) 312
MslI CAYNNNNRTG 1 cut(s) 407
MspI CCGG 1 cut(s) 623
MspR9I CCNGG 2 cut(s) 182, 733
Mva1269I GAATGC 3 cut(s) 448, 513, 564
MvaI CCWGG 2 cut(s) 182, 733
MvnI CGCG 2 cut(s) 15, 490
MwoI GCNNNNNNNGC 5 cut(s) 120, 167, 314, 385, 545
NdeII GATC 1 cut(s) 450
NlaIII CATG 8 cut(s) 168, 301, 398, 460, 566, 668, 753, 875
NlaIV GGNNCC 2 cut(s) 400, 825
NmuCI GTSAC 1 cut(s) 631
NsiI ATGCAT 1 cut(s) 564
NspI RCATGY 3 cut(s) 301, 460, 753
NspV TTCGAA 1 cut(s) 136
PaeI GCATGC 1 cut(s) 301
PciI ACATGT 1 cut(s) 749
PctI GAATGC 3 cut(s) 448, 513, 564
PfeI GAWTC 2 cut(s) 67, 868
PkrI GCNGC 4 cut(s) 17, 307, 487, 835
PleI GAGTC 1 cut(s) 102
PpsI GAGTC 1 cut(s) 102
PscI ACATGT 1 cut(s) 749
Psp6I CCWGG 2 cut(s) 180, 731
PspFI CCCAGC 2 cut(s) 359, 548
PspGI CCWGG 2 cut(s) 180, 731
PspN4I GGNNCC 2 cut(s) 400, 825
RsaI GTAC 1 cut(s) 393
RsaNI GTAC 1 cut(s) 392
RseI CAYNNNNRTG 1 cut(s) 407
SaqAI TTAA 1 cut(s) 312
SatI GCNGC 4 cut(s) 16, 306, 486, 834
Sau3AI GATC 1 cut(s) 450
SchI GAGTC 1 cut(s) 102
ScrFI CCNGG 2 cut(s) 182, 733
SduI GDGCHC 2 cut(s) 172, 250
SfaNI GCATC 3 cut(s) 616, 820, 897
SfuI TTCGAA 1 cut(s) 136
SmiMI CAYNNNNRTG 1 cut(s) 407
SphI GCATGC 1 cut(s) 301
Sse9I AATT 4 cut(s) 476, 540, 587, 645
SsiI CCGC 6 cut(s) 15, 121, 295, 325, 669, 833
StyD4I CCNGG 2 cut(s) 180, 731
StyI CCWWGG 1 cut(s) 259
TaaI ACNGT 3 cut(s) 79, 820, 954
TaqI TCGA 4 cut(s) 45, 136, 218, 244
TasI AATT 4 cut(s) 476, 540, 587, 645
TatI WGTACW 1 cut(s) 391
TauI GCSGC 2 cut(s) 18, 836
TfiI GAWTC 2 cut(s) 67, 868
Tru1I TTAA 1 cut(s) 312
Tru9I TTAA 1 cut(s) 312
TscAI CASTG 2 cut(s) 636, 825
TseFI GTSAC 1 cut(s) 631
TseI GCWGC 2 cut(s) 305, 485
Tsp45I GTSAC 1 cut(s) 631
TspDTI ATGAA 2 cut(s) 121, 860
TspGWI ACGGA 1 cut(s) 519
TspRI CASTG 2 cut(s) 636, 825
XceI RCATGY 3 cut(s) 301, 460, 753
Zsp2I ATGCAT 1 cut(s) 564
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.