Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0020165

Physical Location & Seq

Genomic Coordinates Forward (+)

26066983 .. 26067135

Gene Structure 153 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1121700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 153 bp

ATGGAAGGGCCTACCCCCATTTCGGCTCTTATACATGCCGCTACTATGGTAGTAGCCGGATTTTTTCTTGTAGCTCGACTTTTTCCTCTTTTTATAGTTATACCTTACATTCTAAATCTAATAGCTTTGATAGGTATAATAATATTATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 map00190 map01100

Pfam Domains

Protein Families

Proton_antipo_C Proton_antipo_M Proton_antipo_N

Protein Analysis

51

Amino Acids

5.42

Weight (kDa)

6.5

Isoelectric Point (pI)

19.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Proton_antipo_M	PF00361	1 - 47	6e-07	NADH:quinone oxidoreductase/Mrp antiporter, TM

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020165)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATCG01010
fragaria_vesca	FvH4_c3g00021
malus_domestica	MD00G1121700.v1.1
prunus_persica	Prupe.2G145900_v2.0.a1
rosa_chinensis	RchiOBHm_CPg0501681
rosa_laevigata	RLG00000000210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	39
AfiI	CCNNNNNNNGG	1 cut(s)	22
AluBI	AGCT	2 cut(s)	74, 125
AluI	AGCT	2 cut(s)	74, 125
AoxI	GGCC	1 cut(s)	8
AspS9I	GGNCC	1 cut(s)	8
BisI	GCNGC	1 cut(s)	39
BlsI	GCNGC	1 cut(s)	40
BmgT120I	GGNCC	1 cut(s)	8
Bsc4I	CCNNNNNNNGG	1 cut(s)	22
BseLI	CCNNNNNNNGG	1 cut(s)	22
BshFI	GGCC	1 cut(s)	10
BsiSI	CCGG	1 cut(s)	57
BslI	CCNNNNNNNGG	1 cut(s)	22
BsnI	GGCC	1 cut(s)	10
BspACI	CCGC	1 cut(s)	39
BspANI	GGCC	1 cut(s)	10
BstNSI	RCATGY	1 cut(s)	38
BsuRI	GGCC	1 cut(s)	10
Cfr13I	GGNCC	1 cut(s)	8
CviAII	CATG	1 cut(s)	35
CviJI	RGCY	5 cut(s)	10, 26, 56, 74, 125
CviKI_1	RGCY	5 cut(s)	10, 26, 56, 74, 125
EcoO109I	RGGNCCY	1 cut(s)	8
FaeI	CATG	1 cut(s)	38
FaiI	YATR	6 cut(s)	32, 36, 47, 95, 101, 137
FatI	CATG	1 cut(s)	34
Fnu4HI	GCNGC	1 cut(s)	39
Fsp4HI	GCNGC	1 cut(s)	39
GluI	GCNGC	1 cut(s)	39
HaeIII	GGCC	1 cut(s)	10
HapII	CCGG	1 cut(s)	57
Hin1II	CATG	1 cut(s)	38
HpaII	CCGG	1 cut(s)	57
Hsp92II	CATG	1 cut(s)	38
LpnPI	CCDG	1 cut(s)	70
MnlI	CCTC	1 cut(s)	96
MseI	TTAA	1 cut(s)	151
MspI	CCGG	1 cut(s)	57
NlaIII	CATG	1 cut(s)	38
NspI	RCATGY	1 cut(s)	38
PkrI	GCNGC	1 cut(s)	40
PspPI	GGNCC	1 cut(s)	8
SaqAI	TTAA	1 cut(s)	151
SatI	GCNGC	1 cut(s)	39
Sau96I	GGNCC	1 cut(s)	8
SetI	ASST	4 cut(s)	76, 106, 127, 136
SgeI	CNNG	4 cut(s)	47, 69, 80, 87
SsiI	CCGC	1 cut(s)	39
SspI	AATATT	1 cut(s)	144
TaqI	TCGA	1 cut(s)	76
TauI	GCSGC	1 cut(s)	41
Tru1I	TTAA	1 cut(s)	151
Tru9I	TTAA	1 cut(s)	151
XceI	RCATGY	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.