Prupe.2G145900_v2.0.a1

A subunit of NADH dehydrogenase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
Physical Location & Seq
Reverse (-)
20241701 .. 20242125
425 bp
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UTR
Exon/CDS
Intron
Prupe.2G145900.1

Sequence Viewer

Length: 279 bp
AATACTACGTTATTTCCAATGCTTGTATTAGTTTTATTTACGTTGTTCGTTGGGGCCGTAGGAATTCCATTATTCAATCAGGAAGGAATGGATTTGGATATACTATCCAAATTCTTAAGTTTGTCTATAAACCTTTTACATAAAAATAGAAACCATTCTATGGATTGGTATGAATTTATCAAAAATGCAACCTTTTCCGTTAGTATAGCTTATTTCAGAATTCTTATATCGTCTTTTTTATATAAGCCTGTTTATTCATCTTTACAAAATTTAAATTAA

Protein Analysis

93

Amino Acids

10.6

Weight (kDa)

8.28

Isoelectric Point (pI)

23.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020165)

Species Orthologous Gene IDs
arabidopsis_thaliana ATCG01010
fragaria_vesca FvH4_c3g00021
malus_domestica MD00G1121700.v1.1
prunus_persica Prupe.2G145900_v2.0.a1
rosa_chinensis RchiOBHm_CPg0501681
rosa_laevigata RLG00000000210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 160
AcsI RAATTY 5 cut(s) 63, 110, 173, 219, 268
AfiI CCNNNNNNNGG 1 cut(s) 160
AflII CTTAAG 1 cut(s) 115
AgsI TTSAA 1 cut(s) 76
AluBI AGCT 1 cut(s) 209
AluI AGCT 1 cut(s) 209
AoxI GGCC 1 cut(s) 54
ApoI RAATTY 5 cut(s) 63, 110, 173, 219, 268
Asp700I GAANNNNTTC 1 cut(s) 154
AspS9I GGNCC 1 cut(s) 54
BceAI ACGGC 1 cut(s) 41
BfrI CTTAAG 1 cut(s) 115
BmgT120I GGNCC 1 cut(s) 54
BmiI GGNNCC 1 cut(s) 55
Bsc4I CCNNNNNNNGG 1 cut(s) 160
BseLI CCNNNNNNNGG 1 cut(s) 160
BshFI GGCC 1 cut(s) 56
BslI CCNNNNNNNGG 1 cut(s) 160
BsnI GGCC 1 cut(s) 56
BspANI GGCC 1 cut(s) 56
BspLI GGNNCC 1 cut(s) 55
BspTI CTTAAG 1 cut(s) 115
BstAFI CTTAAG 1 cut(s) 115
BsuRI GGCC 1 cut(s) 56
Cfr13I GGNCC 1 cut(s) 54
CviJI RGCY 3 cut(s) 56, 209, 247
CviKI_1 RGCY 3 cut(s) 56, 209, 247
DraI TTTAAA 1 cut(s) 273
EcoRI GAATTC 2 cut(s) 63, 219
FaiI YATR 9 cut(s) 101, 128, 141, 161, 171, 206, 227, 241, 243
HaeIII GGCC 1 cut(s) 56
Hpy188I TCNGA 1 cut(s) 218
Hpy188III TCNNGA 1 cut(s) 80
HpyAV CCTTC 1 cut(s) 77
HpyCH4IV ACGT 2 cut(s) 8, 41
HpyCH4V TGCA 1 cut(s) 188
HpySE526I ACGT 2 cut(s) 8, 41
LpnPI CCDG 2 cut(s) 65, 261
MaeII ACGT 2 cut(s) 8, 41
MluCI AATT 6 cut(s) 63, 110, 173, 219, 268, 274
MroXI GAANNNNTTC 1 cut(s) 154
MseI TTAA 3 cut(s) 116, 272, 277
MspCI CTTAAG 1 cut(s) 115
NlaIV GGNNCC 1 cut(s) 55
PcsI WCGNNNNNNNCGW 1 cut(s) 54
PdmI GAANNNNTTC 1 cut(s) 154
PflMI CCANNNNNTGG 1 cut(s) 160
PspN4I GGNNCC 1 cut(s) 55
PspPI GGNCC 1 cut(s) 54
SaqAI TTAA 3 cut(s) 116, 272, 277
Sau96I GGNCC 1 cut(s) 54
SetI ASST 5 cut(s) 11, 44, 135, 194, 211
SgeI CNNG 3 cut(s) 35, 92, 260
SmiI ATTTAAAT 1 cut(s) 273
SmlI CTYRAG 1 cut(s) 115
SmoI CTYRAG 1 cut(s) 115
Sse9I AATT 6 cut(s) 63, 110, 173, 219, 268, 274
SwaI ATTTAAAT 1 cut(s) 273
TaiI ACGT 2 cut(s) 11, 44
TasI AATT 6 cut(s) 63, 110, 173, 219, 268, 274
Tru1I TTAA 3 cut(s) 116, 272, 277
Tru9I TTAA 3 cut(s) 116, 272, 277
TspDTI ATGAA 2 cut(s) 186, 246
TspGWI ACGGA 1 cut(s) 187
Van91I CCANNNNNTGG 1 cut(s) 160
Vha464I CTTAAG 1 cut(s) 115
XapI RAATTY 5 cut(s) 63, 110, 173, 219, 268
XmnI GAANNNNTTC 1 cut(s) 154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.