MD00G1140400.v1.1

Belongs to the BetVI family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0019285
Physical Location & Seq
Reverse (-)
30712074 .. 30712867
794 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1140400.v1.1.491

Sequence Viewer

Length: 492 bp
ATGAGTTCCGTAAGTTCGAGGCAGGAATTTACAAGTCCAGTGGCAGCAGACAGGTTGTTCAAGGCCTTGATCCTAGACTCCGACAATCTCATCCCCAAGCTCATGGCTCAGGCCATCAAGAGCATCGAAATCATCAACGGCGACGGCGGCGTAGGAAGCATCAAGCAGATCAACTTTGCTGAGTGTAATTATCAATTAAGCATTAAAAAGGAGGAATGGAGGTGGACAAAAGGAGAGTGCGGAAGTTACTTCAAACTAAAAATCATCACCTTCGTCGCGCCACATTTCTCTGTTTCACGTCTAAATGCGCCTACATGCTCGTCATCGTTGATGCTGTGCTGGTACGCGTTACAAGACACTCTGGACGTGGAGAATTTGGTGTGCAAGTACACTCTGATTGAAGGAGATGTATTGGACGACAAGATTAAGTCCATTTCTTATGAGGTGAGCTTTCAGCTTCCCCTAACGGCGGATGTACTTGTAAGACGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

164

Amino Acids

18.29

Weight (kDa)

5.85

Isoelectric Point (pI)

46.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 7 - 63 6.7e-08 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019285)

Species Orthologous Gene IDs
malus_domestica MD00G1140400.v1.1
pyrus_communis pycom11g27310 pycom13g13650
rosa_chinensis RchiOBHm_Chr4g0424001 RchiOBHm_Chr7g0212461
rosa_multiflora Rmu_co8041456.1_g000001
rosa_roxburghii Rroxscaffold_5G00354710
rosa_rugosa Rorug04G0192500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 278, 347
AciI CCGC 3 cut(s) 147, 240, 470
AclWI GGATC 1 cut(s) 64
AcsI RAATTY 2 cut(s) 26, 373
AfaI GTAC 3 cut(s) 344, 389, 477
AfiI CCNNNNNNNGG 1 cut(s) 469
AflIII ACRYGT 1 cut(s) 345
AgsI TTSAA 3 cut(s) 61, 253, 401
AjiI CACGTC 2 cut(s) 299, 367
AluBI AGCT 3 cut(s) 100, 450, 457
AluI AGCT 3 cut(s) 100, 450, 457
AlwI GGATC 1 cut(s) 64
AoxI GGCC 2 cut(s) 63, 111
ApeKI GCWGC 1 cut(s) 44
ApoI RAATTY 2 cut(s) 26, 373
AspLEI GCGC 2 cut(s) 280, 310
AsuHPI GGTGA 2 cut(s) 259, 457
BbvI GCAGC 1 cut(s) 56
BccI CCATC 1 cut(s) 122
BceAI ACGGC 3 cut(s) 154, 160, 483
BfaI CTAG 1 cut(s) 74
BisI GCNGC 2 cut(s) 45, 148
BlsI GCNGC 2 cut(s) 46, 149
BmgBI CACGTC 2 cut(s) 299, 367
BmsI GCATC 3 cut(s) 132, 168, 321
Bpu10I CCTNAGC 1 cut(s) 108
Bsc4I CCNNNNNNNGG 1 cut(s) 469
Bse1I ACTGG 1 cut(s) 38
BseGI GGATG 2 cut(s) 90, 478
BseLI CCNNNNNNNGG 1 cut(s) 469
BseMII CTCAG 2 cut(s) 122, 171
BseNI ACTGG 1 cut(s) 38
BseXI GCAGC 1 cut(s) 56
Bsh1236I CGCG 2 cut(s) 278, 347
BshFI GGCC 2 cut(s) 65, 113
BslI CCNNNNNNNGG 1 cut(s) 469
BsnI GGCC 2 cut(s) 65, 113
Bsp143I GATC 2 cut(s) 69, 168
BspACI CCGC 3 cut(s) 147, 240, 470
BspANI GGCC 2 cut(s) 65, 113
BspCNI CTCAG 2 cut(s) 121, 172
BspFNI CGCG 2 cut(s) 278, 347
BspPI GGATC 1 cut(s) 64
BsrI ACTGG 1 cut(s) 38
BssMI GATC 2 cut(s) 69, 168
BstDEI CTNAG 2 cut(s) 108, 180
BstF5I GGATG 2 cut(s) 90, 478
BstFNI CGCG 2 cut(s) 278, 347
BstHHI GCGC 2 cut(s) 280, 310
BstKTI GATC 2 cut(s) 72, 171
BstMBI GATC 2 cut(s) 69, 168
BstMWI GCNNNNNNNGC 2 cut(s) 147, 156
BstNSI RCATGY 1 cut(s) 318
BstUI CGCG 2 cut(s) 278, 347
BstV1I GCAGC 1 cut(s) 56
BstXI CCANNNNNNTGG 1 cut(s) 103
BsuRI GGCC 2 cut(s) 65, 113
BtrI CACGTC 2 cut(s) 299, 367
BtsCI GGATG 2 cut(s) 90, 478
BtsIMutI CAGTG 1 cut(s) 45
CfoI GCGC 2 cut(s) 280, 310
Csp6I GTAC 3 cut(s) 343, 388, 476
CspCI CAANNNNNGTGG 2 cut(s) 21, 56
CviAII CATG 2 cut(s) 103, 315
CviJI RGCY 6 cut(s) 65, 100, 107, 113, 450, 457
CviKI_1 RGCY 6 cut(s) 65, 100, 107, 113, 450, 457
CviQI GTAC 3 cut(s) 343, 388, 476
DdeI CTNAG 2 cut(s) 108, 180
DpnI GATC 2 cut(s) 71, 170
DpnII GATC 2 cut(s) 69, 168
EciI GGCGGA 1 cut(s) 485
Eco147I AGGCCT 1 cut(s) 65
FaeI CATG 2 cut(s) 106, 318
FaiI YATR 3 cut(s) 104, 316, 441
FatI CATG 2 cut(s) 102, 314
Fnu4HI GCNGC 2 cut(s) 45, 148
FokI GGATG 2 cut(s) 77, 485
Fsp4HI GCNGC 2 cut(s) 45, 148
FspBI CTAG 1 cut(s) 74
GlaI GCGC 2 cut(s) 279, 309
GluI GCNGC 2 cut(s) 45, 148
HaeIII GGCC 2 cut(s) 65, 113
HhaI GCGC 2 cut(s) 280, 310
Hin1II CATG 2 cut(s) 106, 318
Hin6I GCGC 2 cut(s) 278, 308
HinP1I GCGC 2 cut(s) 278, 308
HinfI GANTC 1 cut(s) 77
HphI GGTGA 2 cut(s) 259, 457
Hpy166II GTNNAC 2 cut(s) 225, 390
Hpy188I TCNGA 2 cut(s) 82, 396
Hpy188III TCNNGA 2 cut(s) 118, 362
Hpy8I GTNNAC 2 cut(s) 225, 390
Hpy99I CGWCG 2 cut(s) 146, 278
HpyAV CCTTC 2 cut(s) 280, 395
HpyCH4IV ACGT 2 cut(s) 298, 366
HpyCH4V TGCA 1 cut(s) 384
HpyF10VI GCNNNNNNNGC 2 cut(s) 147, 156
HpyF3I CTNAG 2 cut(s) 108, 180
HpySE526I ACGT 2 cut(s) 298, 366
Hsp92II CATG 2 cut(s) 106, 318
HspAI GCGC 2 cut(s) 278, 308
Kzo9I GATC 2 cut(s) 69, 168
LpnPI CCDG 6 cut(s) 8, 37, 51, 95, 325, 347
Lsp1109I GCAGC 1 cut(s) 56
LweI GCATC 3 cut(s) 132, 168, 321
MaeI CTAG 1 cut(s) 74
MaeII ACGT 2 cut(s) 298, 366
MaeIII GTNAC 2 cut(s) 245, 348
MalI GATC 2 cut(s) 71, 170
MboI GATC 2 cut(s) 69, 168
MluCI AATT 4 cut(s) 26, 187, 194, 373
MluI ACGCGT 1 cut(s) 345
MlyI GAGTC 1 cut(s) 71
MmeI TCCRAC 1 cut(s) 105
MnlI CCTC 4 cut(s) 12, 205, 213, 436
MseI TTAA 3 cut(s) 197, 204, 426
MvnI CGCG 2 cut(s) 278, 347
MwoI GCNNNNNNNGC 2 cut(s) 147, 156
NdeII GATC 2 cut(s) 69, 168
NlaIII CATG 2 cut(s) 106, 318
NspI RCATGY 1 cut(s) 318
PceI AGGCCT 1 cut(s) 65
PkrI GCNGC 2 cut(s) 46, 149
PleI GAGTC 1 cut(s) 71
PpsI GAGTC 1 cut(s) 71
RsaI GTAC 3 cut(s) 344, 389, 477
RsaNI GTAC 3 cut(s) 343, 388, 476
SaqAI TTAA 3 cut(s) 197, 204, 426
SatI GCNGC 2 cut(s) 45, 148
Sau3AI GATC 2 cut(s) 69, 168
SchI GAGTC 1 cut(s) 71
SetI ASST 9 cut(s) 56, 102, 224, 272, 301, 369, 447, 452, 459
SfaNI GCATC 3 cut(s) 132, 168, 321
Sse9I AATT 4 cut(s) 26, 187, 194, 373
SseBI AGGCCT 1 cut(s) 65
SsiI CCGC 3 cut(s) 147, 240, 470
SspMI CTAG 1 cut(s) 74
StuI AGGCCT 1 cut(s) 65
TaiI ACGT 2 cut(s) 301, 369
TaqI TCGA 2 cut(s) 17, 126
TasI AATT 4 cut(s) 26, 187, 194, 373
TatI WGTACW 2 cut(s) 387, 475
TauI GCSGC 1 cut(s) 150
Tru1I TTAA 3 cut(s) 197, 204, 426
Tru9I TTAA 3 cut(s) 197, 204, 426
TscAI CASTG 1 cut(s) 45
TseI GCWGC 1 cut(s) 44
TspRI CASTG 1 cut(s) 45
XapI RAATTY 2 cut(s) 26, 373
XceI RCATGY 1 cut(s) 318
XspI CTAG 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.