RchiOBHm_Chr4g0424001

Major allergen Pru

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0019285
Physical Location & Seq
Reverse (-)
49537009 .. 49537260
252 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39333

Sequence Viewer

Length: 252 bp
ATGGGCGTGTTCACTTACGAATCCGAGTTCGCCTCTGTCATTGCACCACCAAGACTGTTCAAGGCCTTTGTTCTTGATGCTGACAACCTCATCCCCAAGATTGCCCCACAGGCTGTGAAGAGTGCTGAAATTGTTGAAGGAGATGGAGGTGTTGGAACCATCAAGAAGATTCATCTTGGTGAAGGAAGCGAATACAGCTACGTGAAGCATCAGATTAATGGACTGGACAAAGACAAATTTGTTTACAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

83

Amino Acids

9.09

Weight (kDa)

6.06

Isoelectric Point (pI)

13.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 1 - 80 6e-11 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019285)

Species Orthologous Gene IDs
malus_domestica MD00G1140400.v1.1
pyrus_communis pycom11g27310 pycom13g13650
rosa_chinensis RchiOBHm_Chr4g0424001 RchiOBHm_Chr7g0212461
rosa_multiflora Rmu_co8041456.1_g000001
rosa_roxburghii Rroxscaffold_5G00354710
rosa_rugosa Rorug04G0192500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 236
AgsI TTSAA 2 cut(s) 61, 137
AluBI AGCT 1 cut(s) 198
AluI AGCT 1 cut(s) 198
AoxI GGCC 1 cut(s) 63
ApoI RAATTY 1 cut(s) 236
AseI ATTAAT 1 cut(s) 216
AsuHPI GGTGA 1 cut(s) 191
BccI CCATC 2 cut(s) 137, 167
BglI GCCNNNNNGGC 1 cut(s) 110
BmiI GGNNCC 1 cut(s) 157
BmsI GCATC 2 cut(s) 67, 217
BplI GAGNNNNNCTC 2 cut(s) 17, 49
BsaAI YACGTR 1 cut(s) 202
Bse1I ACTGG 1 cut(s) 228
Bse3DI GCAATG 1 cut(s) 39
BseGI GGATG 1 cut(s) 90
BseMI GCAATG 1 cut(s) 39
BseNI ACTGG 1 cut(s) 228
BshFI GGCC 1 cut(s) 65
BsnI GGCC 1 cut(s) 65
BspANI GGCC 1 cut(s) 65
BspLI GGNNCC 1 cut(s) 157
BsrDI GCAATG 1 cut(s) 39
BsrI ACTGG 1 cut(s) 228
Bst4CI ACNGT 1 cut(s) 57
Bst6I CTCTTC 1 cut(s) 113
BstBAI YACGTR 1 cut(s) 202
BstF5I GGATG 1 cut(s) 90
BstMWI GCNNNNNNNGC 2 cut(s) 110, 195
BsuRI GGCC 1 cut(s) 65
BtsCI GGATG 1 cut(s) 90
CviJI RGCY 3 cut(s) 65, 113, 198
CviKI_1 RGCY 3 cut(s) 65, 113, 198
Eam1104I CTCTTC 1 cut(s) 113
EarI CTCTTC 1 cut(s) 113
Eco147I AGGCCT 1 cut(s) 65
FokI GGATG 1 cut(s) 77
HaeIII GGCC 1 cut(s) 65
HinfI GANTC 2 cut(s) 20, 169
HphI GGTGA 1 cut(s) 191
Hpy166II GTNNAC 2 cut(s) 12, 244
Hpy188I TCNGA 2 cut(s) 25, 213
Hpy188III TCNNGA 2 cut(s) 74, 163
Hpy8I GTNNAC 2 cut(s) 12, 244
HpyAV CCTTC 2 cut(s) 131, 176
HpyCH4III ACNGT 1 cut(s) 57
HpyCH4IV ACGT 1 cut(s) 201
HpyCH4V TGCA 1 cut(s) 44
HpyF10VI GCNNNNNNNGC 2 cut(s) 110, 195
HpySE526I ACGT 1 cut(s) 201
LpnPI CCDG 2 cut(s) 95, 209
LweI GCATC 2 cut(s) 67, 217
MaeII ACGT 1 cut(s) 201
MboII GAAGA 2 cut(s) 130, 178
MluCI AATT 2 cut(s) 129, 236
MmeI TCCRAC 1 cut(s) 133
MnlI CCTC 3 cut(s) 43, 98, 140
MseI TTAA 1 cut(s) 216
MslI CAYNNNNRTG 1 cut(s) 177
MwoI GCNNNNNNNGC 2 cut(s) 110, 195
NlaIV GGNNCC 1 cut(s) 157
PceI AGGCCT 1 cut(s) 65
PfeI GAWTC 2 cut(s) 20, 169
Ppu21I YACGTR 1 cut(s) 202
PshBI ATTAAT 1 cut(s) 216
PspN4I GGNNCC 1 cut(s) 157
RseI CAYNNNNRTG 1 cut(s) 177
SaqAI TTAA 1 cut(s) 216
SetI ASST 4 cut(s) 90, 151, 200, 204
SfaNI GCATC 2 cut(s) 67, 217
SmiMI CAYNNNNRTG 1 cut(s) 177
Sse9I AATT 2 cut(s) 129, 236
SseBI AGGCCT 1 cut(s) 65
StuI AGGCCT 1 cut(s) 65
TaaI ACNGT 1 cut(s) 57
TaiI ACGT 1 cut(s) 204
TasI AATT 2 cut(s) 129, 236
TfiI GAWTC 2 cut(s) 20, 169
Tru1I TTAA 1 cut(s) 216
Tru9I TTAA 1 cut(s) 216
TspDTI ATGAA 1 cut(s) 161
VspI ATTAAT 1 cut(s) 216
XapI RAATTY 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.