Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0021171

Physical Location & Seq

Genomic Coordinates Forward (+)

35072961 .. 35076458

Gene Structure 3498 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1158800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGATTCACAATTTTTTCTTCATTAGGAGTTTGGGTGAGTTGGCTTCGCTAGTTGAGGGTCTTCGCACAGGCAAGGAAACATTATTGAAAGAGTTCATCATTAGTCCCCCCAATGTGCTTACTGAAAATCAGGGAAATCAAACACGGCTATATGGTCCCGAAAAGGGCTTATCATACATCGCCAAACCTGCAACTGGACAGAGTTTTATATCTCACCACGGGAGCGCGTTGAATCAAAGCATACCTCTCGTGGATCCCCTGGTCACTCTCTTTAGCAGTGTCCACGAGAAGATGTCCCAAAGAGGAAGCAAAGGCAGCATGCTTTATCCAAATCTTGGAAGCATTTTGAATGCAGGGGAGTATCATAATAAAAACGCACATTGGGACTTAGAGAGCCAGACAGATGGTGAGGATCACGAATCTGAAGCATCCGGGGCTTATTGTGATGAAAGCTTGAGAAGTCCACTAATCTCGTGCCAAACAACAAGTATGGGAACGCCTAGGTCCGGCGGCAGTGCTTTAGGTGTGAGATCCAATACAATCTTGATGAAAGGAAATGTAGAAGCTAGCATGGCTATCAGTAGTAGTGTGGACACTGGTGGAGGTTGGCAGCTGGCTTATAAGTATTCTGACCGAGTAGGCGAAGACGGGAAGAAGGAAGGAGGAGTTCAAAGATTGTATTTGCATCAGGATAGTGCACTTGGGTGTCGGCCTGCGTCGGTTGTTTCAATTTCTGGTGTAAGACAAGAAAGGAAACTCATTCATGCTGGTCTGGTTAGTCAGCCTGATGTTTCACTCAAGGAACCGACAAGTCTGCGCTCTCTTCGTGCAGAAAAGGTTCCTCCATCGGAAGCTGTTATTAAAGGGCCAACATGGAGAGATATTCTTGTACCGGGAGTGAAGCGTGCACTGGTTGTTGGAATTGGACTTCAAATTCTTCAGCAGATTGTCGGCATAAATGGAGTTCTCTGCTACACTCCTCAGGTTTATGAGCAAGCCAGCATGGTGTTCTATTTAACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

341

Amino Acids

36.76

Weight (kDa)

7.12

Isoelectric Point (pI)

43.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021171)

Species	Orthologous Gene IDs
malus_domestica	MD00G1158800.v1.1 MD02G1110100.v1.1 MD02G1112200.v1.1 MD02G1113300.v1.1
pyrus_communis	pycom02g08830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	621
Acc36I	ACCTGC	1 cut(s)	196
AccB7I	CCANNNNNTGG	1 cut(s)	335
AccII	CGCG	1 cut(s)	227
AciI	CCGC	1 cut(s)	510
AclWI	GGATC	4 cut(s)	248, 261, 420, 525
AcsI	RAATTY	1 cut(s)	933
AcuI	CTGAAG	2 cut(s)	444, 923
AfaI	GTAC	1 cut(s)	891
AfiI	CCNNNNNNNGG	4 cut(s)	164, 194, 335, 506
AgsI	TTSAA	6 cut(s)	88, 232, 349, 671, 729, 932
AjnI	CCWGG	1 cut(s)	258
AleI	CACNNNNGTG	1 cut(s)	703
AluBI	AGCT	4 cut(s)	453, 566, 613, 854
AluI	AGCT	4 cut(s)	453, 566, 613, 854
Alw21I	GWGCWC	2 cut(s)	700, 910
Alw44I	GTGCAC	2 cut(s)	696, 906
AlwI	GGATC	4 cut(s)	248, 261, 420, 525
AoxI	GGCC	2 cut(s)	710, 866
ApaLI	GTGCAC	2 cut(s)	696, 906
ApeKI	GCWGC	2 cut(s)	315, 610
ApoI	RAATTY	1 cut(s)	933
Asp700I	GAANNNNTTC	2 cut(s)	92, 837
AspA2I	CCTAGG	1 cut(s)	500
AspLEI	GCGC	2 cut(s)	227, 819
AspS9I	GGNCC	3 cut(s)	155, 504, 866
AsuC2I	CCSGG	2 cut(s)	433, 894
AsuHPI	GGTGA	3 cut(s)	47, 206, 419
AsuNHI	GCTAGC	1 cut(s)	566
AvaII	GGWCC	2 cut(s)	155, 504
AvrII	CCTAGG	1 cut(s)	500
AxyI	CCTNAGG	1 cut(s)	981
BaeGI	GKGCMC	2 cut(s)	700, 910
BamHI	GGATCC	1 cut(s)	253
BauI	CACGAG	3 cut(s)	248, 284, 472
BbsI	GAAGAC	2 cut(s)	53, 651
Bbv12I	GWGCWC	2 cut(s)	700, 910
BbvI	GCAGC	2 cut(s)	327, 622
BccI	CCATC	2 cut(s)	398, 853
BceAI	ACGGC	1 cut(s)	161
BcgI	CGANNNNNNTGC	4 cut(s)	229, 263, 796, 830
BciT130I	CCWGG	1 cut(s)	260
BcnI	CCSGG	2 cut(s)	433, 894
BfaI	CTAG	3 cut(s)	50, 501, 567
BfuAI	ACCTGC	1 cut(s)	196
BisI	GCNGC	3 cut(s)	316, 511, 611
BlnI	CCTAGG	1 cut(s)	500
BlsI	GCNGC	3 cut(s)	317, 512, 612
Bme1390I	CCNGG	3 cut(s)	260, 433, 894
Bme18I	GGWCC	2 cut(s)	155, 504
BmgT120I	GGNCC	3 cut(s)	155, 504, 866
BmiI	GGNNCC	4 cut(s)	157, 255, 804, 840
BmrFI	CCNGG	3 cut(s)	260, 433, 894
BmsI	GCATC	2 cut(s)	437, 694
BmtI	GCTAGC	1 cut(s)	570
BpiI	GAAGAC	2 cut(s)	53, 651
BpuEI	CTTGAG	2 cut(s)	475, 782
BpuMI	CCSGG	2 cut(s)	433, 894
BsaJI	CCNNGG	4 cut(s)	217, 258, 432, 500
BsaXI	ACNNNNNCTCC	2 cut(s)	19, 49
Bsc4I	CCNNNNNNNGG	4 cut(s)	164, 194, 335, 506
Bse1I	ACTGG	3 cut(s)	199, 601, 915
Bse21I	CCTNAGG	1 cut(s)	981
BseBI	CCWGG	1 cut(s)	260
BseDI	CCNNGG	4 cut(s)	217, 258, 432, 500
BseGI	GGATG	1 cut(s)	428
BseLI	CCNNNNNNNGG	4 cut(s)	164, 194, 335, 506
BseMII	CTCAG	1 cut(s)	995
BseNI	ACTGG	3 cut(s)	199, 601, 915
BseRI	GAGGAG	2 cut(s)	678, 969
BseSI	GKGCMC	2 cut(s)	700, 910
BseXI	GCAGC	2 cut(s)	327, 622
BsgI	GTGCAG	1 cut(s)	849
Bsh1236I	CGCG	1 cut(s)	227
BshFI	GGCC	2 cut(s)	712, 868
BsiHKAI	GWGCWC	2 cut(s)	700, 910
BsiSI	CCGG	3 cut(s)	432, 507, 893
BslFI	GGGAC	4 cut(s)	90, 141, 280, 398
BslI	CCNNNNNNNGG	4 cut(s)	164, 194, 335, 506
BsmFI	GGGAC	4 cut(s)	90, 141, 280, 398
BsmI	GAATGC	1 cut(s)	355
BsnI	GGCC	2 cut(s)	712, 868
Bsp1286I	GDGCHC	2 cut(s)	700, 910
Bsp143I	GATC	3 cut(s)	253, 412, 530
BspACI	CCGC	1 cut(s)	510
BspANI	GGCC	2 cut(s)	712, 868
BspCNI	CTCAG	1 cut(s)	994
BspFNI	CGCG	1 cut(s)	227
BspLI	GGNNCC	4 cut(s)	157, 255, 804, 840
BspMI	ACCTGC	1 cut(s)	196
BspOI	GCTAGC	1 cut(s)	570
BspPI	GGATC	4 cut(s)	248, 261, 420, 525
BsrI	ACTGG	3 cut(s)	199, 601, 915
BssECI	CCNNGG	4 cut(s)	217, 258, 432, 500
BssMI	GATC	3 cut(s)	253, 412, 530
BssSI	CACGAG	3 cut(s)	248, 284, 472
BssT1I	CCWWGG	1 cut(s)	500
Bst2BI	CACGAG	3 cut(s)	248, 284, 472
Bst2UI	CCWGG	1 cut(s)	260
Bst6I	CTCTTC	1 cut(s)	828
BstC8I	GCNNGC	7 cut(s)	320, 568, 615, 714, 906, 996, 1000
BstDEI	CTNAG	2 cut(s)	388, 981
BstDSI	CCRYGG	1 cut(s)	217
BstF5I	GGATG	1 cut(s)	428
BstFNI	CGCG	1 cut(s)	227
BstHHI	GCGC	2 cut(s)	227, 819
BstKTI	GATC	3 cut(s)	256, 415, 533
BstMBI	GATC	3 cut(s)	253, 412, 530
BstMWI	GCNNNNNNNGC	4 cut(s)	188, 315, 434, 572
BstNI	CCWGG	1 cut(s)	260
BstNSI	RCATGY	1 cut(s)	322
BstSCI	CCNGG	3 cut(s)	258, 431, 892
BstSLI	GKGCMC	2 cut(s)	700, 910
BstUI	CGCG	1 cut(s)	227
BstV1I	GCAGC	2 cut(s)	327, 622
BstV2I	GAAGAC	2 cut(s)	53, 651
BstX2I	RGATCY	2 cut(s)	253, 530
BstXI	CCANNNNNNTGG	1 cut(s)	404
BstYI	RGATCY	2 cut(s)	253, 530
Bsu36I	CCTNAGG	1 cut(s)	981
BsuRI	GGCC	2 cut(s)	712, 868
BtgI	CCRYGG	1 cut(s)	217
BtgZI	GCGATG	1 cut(s)	163
BtsCI	GGATG	1 cut(s)	428
BtsI	GCAGTG	2 cut(s)	283, 520
BtsIMutI	CAGTG	4 cut(s)	283, 520, 594, 908
BveI	ACCTGC	1 cut(s)	196
Cac8I	GCNNGC	7 cut(s)	320, 568, 615, 714, 906, 996, 1000
CfoI	GCGC	2 cut(s)	227, 819
Cfr13I	GGNCC	3 cut(s)	155, 504, 866
CseI	GACGC	1 cut(s)	705
Csp6I	GTAC	1 cut(s)	890
CviAII	CATG	5 cut(s)	319, 571, 764, 873, 1003
CviQI	GTAC	1 cut(s)	890
DdeI	CTNAG	2 cut(s)	388, 981
DpnI	GATC	3 cut(s)	255, 414, 532
DpnII	GATC	3 cut(s)	253, 412, 530
Eam1104I	CTCTTC	1 cut(s)	828
EarI	CTCTTC	1 cut(s)	828
Eco130I	CCWWGG	1 cut(s)	500
Eco47I	GGWCC	2 cut(s)	155, 504
Eco57I	CTGAAG	2 cut(s)	444, 923
Eco81I	CCTNAGG	1 cut(s)	981
EcoRII	CCWGG	1 cut(s)	258
EcoT14I	CCWWGG	1 cut(s)	500
ErhI	CCWWGG	1 cut(s)	500
FaeI	CATG	5 cut(s)	322, 574, 767, 876, 1006
FaqI	GGGAC	4 cut(s)	90, 141, 280, 398
FatI	CATG	5 cut(s)	318, 570, 763, 872, 1002
Fnu4HI	GCNGC	3 cut(s)	316, 511, 611
FokI	GGATG	1 cut(s)	415
Fsp4HI	GCNGC	3 cut(s)	316, 511, 611
FspBI	CTAG	3 cut(s)	50, 501, 567
GlaI	GCGC	2 cut(s)	226, 818
GluI	GCNGC	3 cut(s)	316, 511, 611
HaeIII	GGCC	2 cut(s)	712, 868
HapII	CCGG	3 cut(s)	432, 507, 893
HgaI	GACGC	1 cut(s)	705
HhaI	GCGC	2 cut(s)	227, 819
Hin1II	CATG	5 cut(s)	322, 574, 767, 876, 1006
Hin6I	GCGC	2 cut(s)	225, 817
HinP1I	GCGC	2 cut(s)	225, 817
HindIII	AAGCTT	1 cut(s)	451
HinfI	GANTC	3 cut(s)	4, 232, 419
HpaII	CCGG	3 cut(s)	432, 507, 893
HphI	GGTGA	3 cut(s)	47, 206, 419
Hpy166II	GTNNAC	5 cut(s)	283, 464, 592, 698, 908
Hpy188I	TCNGA	3 cut(s)	424, 631, 850
Hpy188III	TCNNGA	4 cut(s)	158, 416, 544, 689
Hpy8I	GTNNAC	5 cut(s)	283, 464, 592, 698, 908
Hpy99I	CGWCG	1 cut(s)	721
HpyAV	CCTTC	2 cut(s)	649, 653
HpyCH4V	TGCA	6 cut(s)	191, 353, 685, 698, 830, 908
HpyF10VI	GCNNNNNNNGC	4 cut(s)	188, 315, 434, 572
HpyF3I	CTNAG	2 cut(s)	388, 981
Hsp92II	CATG	5 cut(s)	322, 574, 767, 876, 1006
HspAI	GCGC	2 cut(s)	225, 817
Kzo9I	GATC	3 cut(s)	253, 412, 530
LmnI	GCTCC	1 cut(s)	222
Lsp1109I	GCAGC	2 cut(s)	327, 622
LweI	GCATC	2 cut(s)	437, 694
MaeI	CTAG	3 cut(s)	50, 501, 567
MaeIII	GTNAC	1 cut(s)	262
MalI	GATC	3 cut(s)	255, 414, 532
MboI	GATC	3 cut(s)	253, 412, 530
MboII	GAAGA	7 cut(s)	10, 53, 301, 656, 664, 815, 929
MflI	RGATCY	2 cut(s)	253, 530
MhlI	GDGCHC	2 cut(s)	700, 910
MluCI	AATT	4 cut(s)	10, 729, 921, 933
MmeI	TCCRAC	1 cut(s)	898
MnlI	CCTC	8 cut(s)	49, 255, 296, 403, 596, 656, 852, 990
MroXI	GAANNNNTTC	2 cut(s)	92, 837
MseI	TTAA	2 cut(s)	861, 1016
MslI	CAYNNNNRTG	1 cut(s)	703
MspA1I	CMGCKG	1 cut(s)	613
MspI	CCGG	3 cut(s)	432, 507, 893
MspR9I	CCNGG	3 cut(s)	260, 433, 894
Mva1269I	GAATGC	1 cut(s)	355
MvaI	CCWGG	1 cut(s)	260
MvnI	CGCG	1 cut(s)	227
MwoI	GCNNNNNNNGC	4 cut(s)	188, 315, 434, 572
NciI	CCSGG	2 cut(s)	433, 894
NdeII	GATC	3 cut(s)	253, 412, 530
NheI	GCTAGC	1 cut(s)	566
NlaIII	CATG	5 cut(s)	322, 574, 767, 876, 1006
NlaIV	GGNNCC	4 cut(s)	157, 255, 804, 840
NmuCI	GTSAC	1 cut(s)	262
NspI	RCATGY	1 cut(s)	322
OliI	CACNNNNGTG	1 cut(s)	703
PaeI	GCATGC	1 cut(s)	322
PctI	GAATGC	1 cut(s)	355
PdmI	GAANNNNTTC	2 cut(s)	92, 837
PfeI	GAWTC	3 cut(s)	4, 232, 419
PflMI	CCANNNNNTGG	1 cut(s)	335
PkrI	GCNGC	3 cut(s)	317, 512, 612
PsiI	TTATAA	1 cut(s)	621
Psp6I	CCWGG	1 cut(s)	258
PspGI	CCWGG	1 cut(s)	258
PspN4I	GGNNCC	4 cut(s)	157, 255, 804, 840
PspPI	GGNCC	3 cut(s)	155, 504, 866
PsuI	RGATCY	2 cut(s)	253, 530
PvuII	CAGCTG	1 cut(s)	613
RsaI	GTAC	1 cut(s)	891
RsaNI	GTAC	1 cut(s)	890
RseI	CAYNNNNRTG	1 cut(s)	703
SaqAI	TTAA	2 cut(s)	861, 1016
SatI	GCNGC	3 cut(s)	316, 511, 611
Sau3AI	GATC	3 cut(s)	253, 412, 530
Sau96I	GGNCC	3 cut(s)	155, 504, 866
ScrFI	CCNGG	3 cut(s)	260, 433, 894
SduI	GDGCHC	2 cut(s)	700, 910
SfaNI	GCATC	2 cut(s)	437, 694
SinI	GGWCC	2 cut(s)	155, 504
SmiMI	CAYNNNNRTG	1 cut(s)	703
SmlI	CTYRAG	2 cut(s)	454, 797
SmoI	CTYRAG	2 cut(s)	454, 797
SphI	GCATGC	1 cut(s)	322
Sse9I	AATT	4 cut(s)	10, 729, 921, 933
SsiI	CCGC	1 cut(s)	510
SspMI	CTAG	3 cut(s)	50, 501, 567
StyD4I	CCNGG	3 cut(s)	258, 431, 892
StyI	CCWWGG	1 cut(s)	500
TaqII	GACCGA	1 cut(s)	648
TasI	AATT	4 cut(s)	10, 729, 921, 933
TauI	GCSGC	1 cut(s)	513
TfiI	GAWTC	3 cut(s)	4, 232, 419
Tru1I	TTAA	2 cut(s)	861, 1016
Tru9I	TTAA	2 cut(s)	861, 1016
TscAI	CASTG	4 cut(s)	283, 520, 601, 915
TseFI	GTSAC	1 cut(s)	262
TseI	GCWGC	2 cut(s)	315, 610
Tsp45I	GTSAC	1 cut(s)	262
TspDTI	ATGAA	5 cut(s)	10, 85, 462, 563, 752
TspRI	CASTG	4 cut(s)	283, 520, 601, 915
Van91I	CCANNNNNTGG	1 cut(s)	335
VneI	GTGCAC	2 cut(s)	696, 906
VpaK11BI	GGWCC	2 cut(s)	155, 504
XapI	RAATTY	1 cut(s)	933
XceI	RCATGY	1 cut(s)	322
XmaJI	CCTAGG	1 cut(s)	500
XmnI	GAANNNNTTC	2 cut(s)	92, 837
XspI	CTAG	3 cut(s)	50, 501, 567

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.