Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0021171

Physical Location & Seq

Genomic Coordinates Forward (+)

6086171 .. 6087974

Gene Structure 1804 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g08830.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGATTATCCGAAACGCAGGCGGATTGATCTTAATGTTCCTTTTGATATTGAGGAGGAGCAAGAGCAACCATCCACTTCAGATGACTCACAATTTTTTCTTCATTAGAAGTTTGGGTGAGTTGGCTTCGCTAGTTGAGGGTCTTCGCACAGGCAAGGAAACATCATTGGAAGAGTTCATCATTAGTCCCCCCAATGTGCTTACTGAAAATCTGGGAAATCAAATACGGCTATTTGGTCCCGAAAAGGGCTTATCATACATCGTCAAACCTGCAACTGGACAGAGTTTTATATCTCACCATGGGAGCGCGTTGAACGAAAGTAGACCTCTTGTGGATCCTCTGGTGACTCTCCTTAGCAGTGTCCACGAGAAGATGTCCGAAAGAGGAAGCAAGGGCAGCATGTTTAGCCAAATCTTGGAAGCATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

143

Amino Acids

15.74

Weight (kDa)

9.22

Isoelectric Point (pI)

49.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021171)

Species	Orthologous Gene IDs
malus_domestica	MD00G1158800.v1.1 MD02G1110100.v1.1 MD02G1112200.v1.1 MD02G1113300.v1.1
pyrus_communis	pycom02g08830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	277
AccB7I	CCANNNNNTGG	1 cut(s)	415
AccI	GTMKAC	1 cut(s)	322
AccII	CGCG	1 cut(s)	308
AciI	CCGC	1 cut(s)	21
AclWI	GGATC	2 cut(s)	329, 342
AcuI	CTGAAG	1 cut(s)	62
AfiI	CCNNNNNNNGG	3 cut(s)	245, 275, 415
AgsI	TTSAA	1 cut(s)	313
AlwI	GGATC	2 cut(s)	329, 342
ApeKI	GCWGC	1 cut(s)	396
AspLEI	GCGC	1 cut(s)	308
AspS9I	GGNCC	1 cut(s)	236
AsuHPI	GGTGA	3 cut(s)	128, 287, 355
AvaII	GGWCC	1 cut(s)	236
BamHI	GGATCC	1 cut(s)	334
BauI	CACGAG	1 cut(s)	365
BbsI	GAAGAC	1 cut(s)	134
BbvI	GCAGC	1 cut(s)	408
BccI	CCATC	1 cut(s)	78
BceAI	ACGGC	1 cut(s)	242
BfaI	CTAG	1 cut(s)	131
BfuAI	ACCTGC	1 cut(s)	277
BisI	GCNGC	1 cut(s)	397
BlsI	GCNGC	1 cut(s)	398
Bme18I	GGWCC	1 cut(s)	236
BmgT120I	GGNCC	1 cut(s)	236
BmiI	GGNNCC	2 cut(s)	238, 336
BpiI	GAAGAC	1 cut(s)	134
Bpu10I	CCTNAGC	1 cut(s)	353
BsaJI	CCNNGG	1 cut(s)	298
Bsc4I	CCNNNNNNNGG	3 cut(s)	245, 275, 415
Bse1I	ACTGG	1 cut(s)	280
BseDI	CCNNGG	1 cut(s)	298
BseGI	GGATG	1 cut(s)	70
BseLI	CCNNNNNNNGG	3 cut(s)	245, 275, 415
BseNI	ACTGG	1 cut(s)	280
BseRI	GAGGAG	2 cut(s)	67, 70
BseXI	GCAGC	1 cut(s)	408
Bsh1236I	CGCG	1 cut(s)	308
BslFI	GGGAC	2 cut(s)	171, 222
BslI	CCNNNNNNNGG	3 cut(s)	245, 275, 415
BsmFI	GGGAC	2 cut(s)	171, 222
Bsp143I	GATC	2 cut(s)	27, 334
Bsp19I	CCATGG	1 cut(s)	298
BspACI	CCGC	1 cut(s)	21
BspFNI	CGCG	1 cut(s)	308
BspLI	GGNNCC	2 cut(s)	238, 336
BspMI	ACCTGC	1 cut(s)	277
BspPI	GGATC	2 cut(s)	329, 342
BsrI	ACTGG	1 cut(s)	280
BssECI	CCNNGG	1 cut(s)	298
BssMI	GATC	2 cut(s)	27, 334
BssSI	CACGAG	1 cut(s)	365
BssT1I	CCWWGG	1 cut(s)	298
Bst2BI	CACGAG	1 cut(s)	365
Bst6I	CTCTTC	1 cut(s)	165
BstC8I	GCNNGC	1 cut(s)	19
BstDEI	CTNAG	1 cut(s)	353
BstDSI	CCRYGG	1 cut(s)	298
BstF5I	GGATG	1 cut(s)	70
BstFNI	CGCG	1 cut(s)	308
BstHHI	GCGC	1 cut(s)	308
BstKTI	GATC	2 cut(s)	30, 337
BstMBI	GATC	2 cut(s)	27, 334
BstMWI	GCNNNNNNNGC	2 cut(s)	396, 405
BstNSI	RCATGY	1 cut(s)	403
BstUI	CGCG	1 cut(s)	308
BstV1I	GCAGC	1 cut(s)	408
BstV2I	GAAGAC	1 cut(s)	134
BstX2I	RGATCY	1 cut(s)	334
BstYI	RGATCY	1 cut(s)	334
BtgI	CCRYGG	1 cut(s)	298
BtsCI	GGATG	1 cut(s)	70
BtsI	GCAGTG	1 cut(s)	364
BtsIMutI	CAGTG	1 cut(s)	364
BveI	ACCTGC	1 cut(s)	277
Cac8I	GCNNGC	1 cut(s)	19
CfoI	GCGC	1 cut(s)	308
Cfr13I	GGNCC	1 cut(s)	236
CviAII	CATG	2 cut(s)	299, 400
CviJI	RGCY	4 cut(s)	125, 229, 249, 408
CviKI_1	RGCY	4 cut(s)	125, 229, 249, 408
DdeI	CTNAG	1 cut(s)	353
DpnI	GATC	2 cut(s)	29, 336
DpnII	GATC	2 cut(s)	27, 334
Eam1104I	CTCTTC	1 cut(s)	165
EarI	CTCTTC	1 cut(s)	165
EciI	GGCGGA	1 cut(s)	36
Eco130I	CCWWGG	1 cut(s)	298
Eco47I	GGWCC	1 cut(s)	236
Eco57I	CTGAAG	1 cut(s)	62
EcoT14I	CCWWGG	1 cut(s)	298
ErhI	CCWWGG	1 cut(s)	298
FaeI	CATG	2 cut(s)	302, 403
FaiI	YATR	4 cut(s)	256, 290, 300, 401
FaqI	GGGAC	2 cut(s)	171, 222
FatI	CATG	2 cut(s)	298, 399
FblI	GTMKAC	1 cut(s)	322
Fnu4HI	GCNGC	1 cut(s)	397
FokI	GGATG	1 cut(s)	57
Fsp4HI	GCNGC	1 cut(s)	397
FspBI	CTAG	1 cut(s)	131
GlaI	GCGC	1 cut(s)	307
GluI	GCNGC	1 cut(s)	397
HhaI	GCGC	1 cut(s)	308
Hin1II	CATG	2 cut(s)	302, 403
Hin6I	GCGC	1 cut(s)	306
HinP1I	GCGC	1 cut(s)	306
HinfI	GANTC	2 cut(s)	85, 346
HphI	GGTGA	3 cut(s)	128, 287, 355
Hpy166II	GTNNAC	2 cut(s)	323, 364
Hpy188I	TCNGA	3 cut(s)	11, 81, 379
Hpy188III	TCNNGA	1 cut(s)	239
Hpy8I	GTNNAC	2 cut(s)	323, 364
HpyCH4V	TGCA	1 cut(s)	272
HpyF10VI	GCNNNNNNNGC	2 cut(s)	396, 405
HpyF3I	CTNAG	1 cut(s)	353
Hsp92II	CATG	2 cut(s)	302, 403
HspAI	GCGC	1 cut(s)	306
Kzo9I	GATC	2 cut(s)	27, 334
LmnI	GCTCC	2 cut(s)	57, 303
LpnPI	CCDG	6 cut(s)	3, 135, 197, 261, 282, 326
Lsp1109I	GCAGC	1 cut(s)	408
MaeI	CTAG	1 cut(s)	131
MaeIII	GTNAC	1 cut(s)	343
MalI	GATC	2 cut(s)	29, 336
MboI	GATC	2 cut(s)	27, 334
MboII	GAAGA	4 cut(s)	91, 134, 182, 382
MflI	RGATCY	1 cut(s)	334
MluCI	AATT	1 cut(s)	91
MlyI	GAGTC	2 cut(s)	79, 340
MnlI	CCTC	6 cut(s)	45, 48, 130, 336, 348, 377
MseI	TTAA	1 cut(s)	32
MvnI	CGCG	1 cut(s)	308
MwoI	GCNNNNNNNGC	2 cut(s)	396, 405
NcoI	CCATGG	1 cut(s)	298
NdeII	GATC	2 cut(s)	27, 334
NlaIII	CATG	2 cut(s)	302, 403
NlaIV	GGNNCC	2 cut(s)	238, 336
NmuCI	GTSAC	1 cut(s)	343
NspI	RCATGY	1 cut(s)	403
PflMI	CCANNNNNTGG	1 cut(s)	415
PkrI	GCNGC	1 cut(s)	398
PleI	GAGTC	2 cut(s)	79, 340
PpsI	GAGTC	2 cut(s)	79, 340
PspN4I	GGNNCC	2 cut(s)	238, 336
PspPI	GGNCC	1 cut(s)	236
PsuI	RGATCY	1 cut(s)	334
SaqAI	TTAA	1 cut(s)	32
SatI	GCNGC	1 cut(s)	397
Sau3AI	GATC	2 cut(s)	27, 334
Sau96I	GGNCC	1 cut(s)	236
SchI	GAGTC	2 cut(s)	79, 340
SetI	ASST	2 cut(s)	271, 328
SinI	GGWCC	1 cut(s)	236
Sse9I	AATT	1 cut(s)	91
SsiI	CCGC	1 cut(s)	21
SspMI	CTAG	1 cut(s)	131
StyI	CCWWGG	1 cut(s)	298
TasI	AATT	1 cut(s)	91
Tru1I	TTAA	1 cut(s)	32
Tru9I	TTAA	1 cut(s)	32
TscAI	CASTG	1 cut(s)	364
TseFI	GTSAC	1 cut(s)	343
TseI	GCWGC	1 cut(s)	396
Tsp45I	GTSAC	1 cut(s)	343
TspDTI	ATGAA	2 cut(s)	91, 166
TspRI	CASTG	1 cut(s)	364
Van91I	CCANNNNNTGG	1 cut(s)	415
VpaK11BI	GGWCC	1 cut(s)	236
XceI	RCATGY	1 cut(s)	403
XmiI	GTMKAC	1 cut(s)	322
XspI	CTAG	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.