Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0021171

Physical Location & Seq

Genomic Coordinates Forward (+)

9194987 .. 9196024

Gene Structure 1038 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1113300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGTCCGAAAGAGGAAGTAAAGGCAGTGTCCACGAGAAGATGTCCGAAAGAGGAAGTAAAGGCAGCATGTTTTATCCAAATCTTGGAAGCATTTTGAATGCAGGGGAGTATCATAATAAAAACGCACATTGGGACATAGAGAGCCAGACAGATGATGAGGATCACGAATCTGAAGCAGCCGGGGCTTATTGTGATGAAAGCTTGAGAAGTCCACTAATCTCGTGCCAAACAAGAAGCATGGGAAAGCCTAGGTCTGGCGGCAGTGCTTTAGGTGTGAGATGCAATACAATCTTGATGAAAGGAAATGTAGAAGCTAGCGAGGCTATCAGTAGTAGTATGGACACTGGTGGAGGTTGGCAGCTGGCTTATAAGTATTCTGACCGAGTAGGCGAAGACGGGAAGAAGGAAGGAGGACCTGATGTTTCACTCAAGGAACTGACAAGTCTGCGCTCTCTCCGTGCAGAGAAGCGTTCAGTAATAGTTGGAATTGGACTTCAAATTCTTGAGCAGATTGTCGGCATAAATGGAGTTCTCTACTACACTCCCCAGGTTTATGAGCAAGCCAGCATCGCTGTTCTTCTATTTAACATAGGGTTGATTCCAACATGCATCTCTCTTCTTAAGTGCCATTACAACTTTCTTAATGCTTCCTTGCATTGCTACGCCCATGTGGCTAATGGATATAACTGGCAGAAGGTATTTATATTTCAAAAACCTTCAATTTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

243

Amino Acids

26.46

Weight (kDa)

6.38

Isoelectric Point (pI)

47.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	120 - 197	4.6e-06	Sugar (and other) transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021171)

Species	Orthologous Gene IDs
malus_domestica	MD00G1158800.v1.1 MD02G1110100.v1.1 MD02G1112200.v1.1 MD02G1113300.v1.1
pyrus_communis	pycom02g08830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	369
AccB7I	CCANNNNNTGG	1 cut(s)	83
AciI	CCGC	1 cut(s)	258
AclWI	GGATC	1 cut(s)	168
AcsI	RAATTY	1 cut(s)	498
AcuI	CTGAAG	1 cut(s)	192
AfiI	CCNNNNNNNGG	2 cut(s)	83, 254
AflII	CTTAAG	1 cut(s)	620
AgsI	TTSAA	4 cut(s)	97, 497, 710, 720
AjnI	CCWGG	1 cut(s)	546
AluBI	AGCT	3 cut(s)	201, 314, 361
AluI	AGCT	3 cut(s)	201, 314, 361
AlwI	GGATC	1 cut(s)	168
ApeKI	GCWGC	3 cut(s)	63, 176, 358
ApoI	RAATTY	1 cut(s)	498
AspA2I	CCTAGG	1 cut(s)	248
AspLEI	GCGC	1 cut(s)	450
AspS9I	GGNCC	1 cut(s)	413
AsuC2I	CCSGG	1 cut(s)	181
AsuNHI	GCTAGC	1 cut(s)	314
AvaII	GGWCC	1 cut(s)	413
AvrII	CCTAGG	1 cut(s)	248
BauI	CACGAG	2 cut(s)	32, 220
BbsI	GAAGAC	1 cut(s)	399
BbvI	GCAGC	3 cut(s)	75, 188, 370
BciT130I	CCWGG	1 cut(s)	548
BcnI	CCSGG	1 cut(s)	181
BfaI	CTAG	2 cut(s)	249, 315
BfrI	CTTAAG	1 cut(s)	620
BglI	GCCNNNNNGGC	1 cut(s)	671
BisI	GCNGC	4 cut(s)	64, 177, 259, 359
BlnI	CCTAGG	1 cut(s)	248
BlsI	GCNGC	4 cut(s)	65, 178, 260, 360
Bme1390I	CCNGG	2 cut(s)	181, 548
Bme18I	GGWCC	1 cut(s)	413
BmgT120I	GGNCC	1 cut(s)	413
BmrFI	CCNGG	2 cut(s)	181, 548
BmsI	GCATC	3 cut(s)	269, 576, 618
BmtI	GCTAGC	1 cut(s)	318
BpiI	GAAGAC	1 cut(s)	399
BpuEI	CTTGAG	3 cut(s)	223, 413, 524
BpuMI	CCSGG	1 cut(s)	181
BsaBI	GATNNNNATC	1 cut(s)	159
BsaJI	CCNNGG	3 cut(s)	180, 248, 546
Bsc4I	CCNNNNNNNGG	2 cut(s)	83, 254
Bse1I	ACTGG	2 cut(s)	349, 692
Bse3DI	GCAATG	1 cut(s)	655
Bse8I	GATNNNNATC	1 cut(s)	159
BseBI	CCWGG	1 cut(s)	548
BseDI	CCNNGG	3 cut(s)	180, 248, 546
BseJI	GATNNNNATC	1 cut(s)	159
BseLI	CCNNNNNNNGG	2 cut(s)	83, 254
BseMI	GCAATG	1 cut(s)	655
BseNI	ACTGG	2 cut(s)	349, 692
BseXI	GCAGC	3 cut(s)	75, 188, 370
BsgI	GTGCAG	1 cut(s)	480
BsiSI	CCGG	1 cut(s)	180
BslFI	GGGAC	1 cut(s)	146
BslI	CCNNNNNNNGG	2 cut(s)	83, 254
BsmFI	GGGAC	1 cut(s)	146
BsmI	GAATGC	1 cut(s)	103
Bsp143I	GATC	1 cut(s)	160
BspACI	CCGC	1 cut(s)	258
BspOI	GCTAGC	1 cut(s)	318
BspPI	GGATC	1 cut(s)	168
BspTI	CTTAAG	1 cut(s)	620
BsrDI	GCAATG	1 cut(s)	655
BsrI	ACTGG	2 cut(s)	349, 692
BssECI	CCNNGG	3 cut(s)	180, 248, 546
BssMI	GATC	1 cut(s)	160
BssSI	CACGAG	2 cut(s)	32, 220
BssT1I	CCWWGG	1 cut(s)	248
Bst2BI	CACGAG	2 cut(s)	32, 220
Bst2UI	CCWGG	1 cut(s)	548
Bst6I	CTCTTC	1 cut(s)	621
BstAFI	CTTAAG	1 cut(s)	620
BstC8I	GCNNGC	4 cut(s)	316, 363, 561, 565
BstHHI	GCGC	1 cut(s)	450
BstKTI	GATC	1 cut(s)	163
BstMBI	GATC	1 cut(s)	160
BstMWI	GCNNNNNNNGC	4 cut(s)	182, 320, 569, 671
BstNI	CCWGG	1 cut(s)	548
BstNSI	RCATGY	2 cut(s)	70, 609
BstSCI	CCNGG	2 cut(s)	179, 546
BstV1I	GCAGC	3 cut(s)	75, 188, 370
BstV2I	GAAGAC	1 cut(s)	399
BtgZI	GCGATG	1 cut(s)	553
BtsI	GCAGTG	2 cut(s)	31, 268
BtsIMutI	CAGTG	3 cut(s)	31, 268, 342
Cac8I	GCNNGC	4 cut(s)	316, 363, 561, 565
CfoI	GCGC	1 cut(s)	450
Cfr13I	GGNCC	1 cut(s)	413
CviAII	CATG	4 cut(s)	67, 238, 606, 668
DpnI	GATC	1 cut(s)	162
DpnII	GATC	1 cut(s)	160
Eam1104I	CTCTTC	1 cut(s)	621
EarI	CTCTTC	1 cut(s)	621
Eco130I	CCWWGG	1 cut(s)	248
Eco47I	GGWCC	1 cut(s)	413
Eco57I	CTGAAG	1 cut(s)	192
EcoO109I	RGGNCCY	1 cut(s)	413
EcoRII	CCWGG	1 cut(s)	546
EcoT14I	CCWWGG	1 cut(s)	248
EcoT22I	ATGCAT	1 cut(s)	611
ErhI	CCWWGG	1 cut(s)	248
FaeI	CATG	4 cut(s)	70, 241, 609, 671
FaqI	GGGAC	1 cut(s)	146
FatI	CATG	4 cut(s)	66, 237, 605, 667
Fnu4HI	GCNGC	4 cut(s)	64, 177, 259, 359
Fsp4HI	GCNGC	4 cut(s)	64, 177, 259, 359
FspBI	CTAG	2 cut(s)	249, 315
GlaI	GCGC	1 cut(s)	449
GluI	GCNGC	4 cut(s)	64, 177, 259, 359
HapII	CCGG	1 cut(s)	180
HhaI	GCGC	1 cut(s)	450
Hin1II	CATG	4 cut(s)	70, 241, 609, 671
Hin6I	GCGC	1 cut(s)	448
HinP1I	GCGC	1 cut(s)	448
HindIII	AAGCTT	1 cut(s)	199
HinfI	GANTC	2 cut(s)	167, 598
HpaII	CCGG	1 cut(s)	180
Hpy166II	GTNNAC	2 cut(s)	31, 212
Hpy188I	TCNGA	4 cut(s)	7, 46, 172, 379
Hpy188III	TCNNGA	3 cut(s)	164, 292, 503
Hpy8I	GTNNAC	2 cut(s)	31, 212
HpyAV	CCTTC	4 cut(s)	397, 401, 688, 726
HpyCH4V	TGCA	5 cut(s)	101, 282, 461, 609, 655
HpyF10VI	GCNNNNNNNGC	4 cut(s)	182, 320, 569, 671
Hsp92II	CATG	4 cut(s)	70, 241, 609, 671
HspAI	GCGC	1 cut(s)	448
Kzo9I	GATC	1 cut(s)	160
Lsp1109I	GCAGC	3 cut(s)	75, 188, 370
LweI	GCATC	3 cut(s)	269, 576, 618
MaeI	CTAG	2 cut(s)	249, 315
MalI	GATC	1 cut(s)	162
MboI	GATC	1 cut(s)	160
MboII	GAAGA	5 cut(s)	49, 404, 412, 569, 608
MluCI	AATT	3 cut(s)	486, 498, 720
MmeI	TCCRAC	2 cut(s)	463, 626
MnlI	CCTC	6 cut(s)	5, 44, 151, 313, 344, 404
Mph1103I	ATGCAT	1 cut(s)	611
MseI	TTAA	3 cut(s)	585, 621, 642
MspA1I	CMGCKG	1 cut(s)	361
MspCI	CTTAAG	1 cut(s)	620
MspI	CCGG	1 cut(s)	180
MspR9I	CCNGG	2 cut(s)	181, 548
Mva1269I	GAATGC	1 cut(s)	103
MvaI	CCWGG	1 cut(s)	548
MwoI	GCNNNNNNNGC	4 cut(s)	182, 320, 569, 671
NciI	CCSGG	1 cut(s)	181
NdeII	GATC	1 cut(s)	160
NheI	GCTAGC	1 cut(s)	314
NlaIII	CATG	4 cut(s)	70, 241, 609, 671
NsiI	ATGCAT	1 cut(s)	611
NspI	RCATGY	2 cut(s)	70, 609
PctI	GAATGC	1 cut(s)	103
PfeI	GAWTC	2 cut(s)	167, 598
PflMI	CCANNNNNTGG	1 cut(s)	83
PkrI	GCNGC	4 cut(s)	65, 178, 260, 360
PpuMI	RGGWCCY	1 cut(s)	413
PsiI	TTATAA	1 cut(s)	369
Psp5II	RGGWCCY	1 cut(s)	413
Psp6I	CCWGG	1 cut(s)	546
PspGI	CCWGG	1 cut(s)	546
PspPI	GGNCC	1 cut(s)	413
PspPPI	RGGWCCY	1 cut(s)	413
PvuII	CAGCTG	1 cut(s)	361
SaqAI	TTAA	3 cut(s)	585, 621, 642
SatI	GCNGC	4 cut(s)	64, 177, 259, 359
Sau3AI	GATC	1 cut(s)	160
Sau96I	GGNCC	1 cut(s)	413
ScrFI	CCNGG	2 cut(s)	181, 548
SfaNI	GCATC	3 cut(s)	269, 576, 618
SinI	GGWCC	1 cut(s)	413
SmlI	CTYRAG	4 cut(s)	202, 428, 503, 620
SmoI	CTYRAG	4 cut(s)	202, 428, 503, 620
Sse9I	AATT	3 cut(s)	486, 498, 720
SsiI	CCGC	1 cut(s)	258
SspMI	CTAG	2 cut(s)	249, 315
StyD4I	CCNGG	2 cut(s)	179, 546
StyI	CCWWGG	1 cut(s)	248
TaqII	GACCGA	1 cut(s)	396
TasI	AATT	3 cut(s)	486, 498, 720
TauI	GCSGC	1 cut(s)	261
TfiI	GAWTC	2 cut(s)	167, 598
Tru1I	TTAA	3 cut(s)	585, 621, 642
Tru9I	TTAA	3 cut(s)	585, 621, 642
TscAI	CASTG	3 cut(s)	31, 268, 349
TseI	GCWGC	3 cut(s)	63, 176, 358
TspDTI	ATGAA	3 cut(s)	210, 311, 714
TspGWI	ACGGA	1 cut(s)	446
TspRI	CASTG	3 cut(s)	31, 268, 349
Van91I	CCANNNNNTGG	1 cut(s)	83
Vha464I	CTTAAG	1 cut(s)	620
VpaK11BI	GGWCC	1 cut(s)	413
XapI	RAATTY	1 cut(s)	498
XceI	RCATGY	2 cut(s)	70, 609
XcmI	CCANNNNNNNNNTGG	1 cut(s)	674
XmaJI	CCTAGG	1 cut(s)	248
XspI	CTAG	2 cut(s)	249, 315
Zsp2I	ATGCAT	1 cut(s)	611

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.