Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0021171

Physical Location & Seq

Genomic Coordinates Forward (+)

8887863 .. 8889512

Gene Structure 1650 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1110100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGTCCAACAGAGGAAGCAAAGGCAGCATGCTTTATCCAAATCTTGGAAGCATTTTGAATGCAGGAGAGTATCATAATAAAAACGCACATTGGGACATAGAGAGCCAGACAGATGGTGAGGATCACGAATCTGAAGCATCCGGGGCTTATTGTGATGAAAGCTTGAGAAGTCCACTAATCTCGTGCCAAACAACAAGCATGGGAACGCCTAGGTCCGGCGGCAGCGAAGACGGGAAGAAGGAAGGAGGAGTTCGAAGAGTGTATTTGCATCAGGATAGTGCACTTGGGTGTCGGCCTGCATCGGTTGTTTCAATTTCTGGTGTAAGACAAGAAAGGAAACTCATTCATGCTGGTCTGGTTAGTCAGCCTGATGTTTCACTCAAGGAACCGACAAGTCTGCGCTCTCTTCGTGCAGAAAAGGTTCCTCCATCGGAAGCTGTTATTAAAGGGCCAACATGGAGAGATCTTCTTGAACCGGGAGTGAAGCATGCACTAGTTGTTGGAATTGGACTTCAAATTCTTCAGCAGATTGTCGGCATAAATGGAGTTCTCTACTACACTCTTCAGGTTTATGAGCAAGCCAGCATCGCTGTTCTTCTATTTAACATAGGGTTGATTCCAAACAGCTTTCCTTTTTGCCTTACTTGGTATGCAGGTCGCTGCTGCTCTCCACATTATATTGTCCCTCACTCTTCTTGTAGTTGCCAACATTATCAACTTGGGAACTGTTCTGAATGCAACAATCTCCACCGCCGTGCCTGCTGCTTCGTCATGGCATTTGGAGTAACCCCGAACATTGTCTGCTTAGAGATCATCCCTACGAGCATCCACGGCCTCTGCATTGCCATCTGTGCCCTCGCATTCTGGATTGGAGACGTCATCATCACTTACGCATTTCCTGTCATGCTCTCCTCCGTTGAATTTGCTGGCATCTTCAGAATCTGTGTTGTCGGGTGCATCGTTCCCGGATATTTGTTTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

328

Amino Acids

35.54

Weight (kDa)

6.58

Isoelectric Point (pI)

56.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021171)

Species	Orthologous Gene IDs
malus_domestica	MD00G1158800.v1.1 MD02G1110100.v1.1 MD02G1112200.v1.1 MD02G1113300.v1.1
pyrus_communis	pycom02g08830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	879
Acc36I	ACCTGC	1 cut(s)	644
AccB7I	CCANNNNNTGG	1 cut(s)	44
AciI	CCGC	2 cut(s)	219, 751
AclWI	GGATC	1 cut(s)	129
AcsI	RAATTY	2 cut(s)	516, 920
AcuI	CTGAAG	4 cut(s)	153, 506, 548, 919
AcyI	GRCGYC	1 cut(s)	876
AfiI	CCNNNNNNNGG	2 cut(s)	44, 215
AgsI	TTSAA	5 cut(s)	58, 312, 473, 515, 920
AhlI	ACTAGT	1 cut(s)	493
AleI	CACNNNNGTG	2 cut(s)	286, 753
AluBI	AGCT	3 cut(s)	162, 437, 627
AluI	AGCT	3 cut(s)	162, 437, 627
Alw21I	GWGCWC	1 cut(s)	283
Alw26I	GTCTC	1 cut(s)	867
Alw44I	GTGCAC	1 cut(s)	279
AlwI	GGATC	1 cut(s)	129
AlwNI	CAGNNNCTG	1 cut(s)	942
AoxI	GGCC	3 cut(s)	293, 449, 832
ApaLI	GTGCAC	1 cut(s)	279
ApeKI	GCWGC	5 cut(s)	24, 222, 660, 663, 762
ApoI	RAATTY	2 cut(s)	516, 920
Asp700I	GAANNNNTTC	1 cut(s)	420
AspA2I	CCTAGG	1 cut(s)	209
AspLEI	GCGC	1 cut(s)	402
AspS9I	GGNCC	2 cut(s)	213, 449
AsuC2I	CCSGG	3 cut(s)	142, 477, 966
AsuHPI	GGTGA	1 cut(s)	128
AsuII	TTCGAA	1 cut(s)	253
AvaII	GGWCC	1 cut(s)	213
AvrII	CCTAGG	1 cut(s)	209
BaeGI	GKGCMC	2 cut(s)	283, 856
BauI	CACGAG	1 cut(s)	181
BbsI	GAAGAC	1 cut(s)	234
Bbv12I	GWGCWC	1 cut(s)	283
BbvI	GCAGC	5 cut(s)	36, 234, 647, 650, 749
BccI	CCATC	3 cut(s)	107, 436, 854
BceAI	ACGGC	2 cut(s)	738, 847
BcgI	CGANNNNNNTGC	2 cut(s)	379, 413
BcnI	CCSGG	3 cut(s)	142, 477, 966
BcoDI	GTCTC	1 cut(s)	867
BcuI	ACTAGT	1 cut(s)	493
BfaI	CTAG	2 cut(s)	210, 494
BfuAI	ACCTGC	1 cut(s)	644
BglII	AGATCT	1 cut(s)	463
BisI	GCNGC	6 cut(s)	25, 220, 223, 661, 664, 763
BlnI	CCTAGG	1 cut(s)	209
BlsI	GCNGC	6 cut(s)	26, 221, 224, 662, 665, 764
Bme1390I	CCNGG	3 cut(s)	142, 477, 966
Bme18I	GGWCC	1 cut(s)	213
BmgT120I	GGNCC	2 cut(s)	213, 449
BmiI	GGNNCC	2 cut(s)	387, 423
BmrFI	CCNGG	3 cut(s)	142, 477, 966
BmsI	GCATC	7 cut(s)	146, 277, 308, 594, 834, 939, 966
BpiI	GAAGAC	1 cut(s)	234
Bpu14I	TTCGAA	1 cut(s)	253
BpuEI	CTTGAG	2 cut(s)	184, 365
BpuMI	CCSGG	3 cut(s)	142, 477, 966
BsaHI	GRCGYC	1 cut(s)	876
BsaJI	CCNNGG	3 cut(s)	141, 209, 829
Bsc4I	CCNNNNNNNGG	2 cut(s)	44, 215
Bse3DI	GCAATG	1 cut(s)	840
BseDI	CCNNGG	3 cut(s)	141, 209, 829
BseGI	GGATG	3 cut(s)	137, 813, 825
BseLI	CCNNNNNNNGG	2 cut(s)	44, 215
BseMI	GCAATG	1 cut(s)	840
BseRI	GAGGAG	2 cut(s)	261, 901
BseSI	GKGCMC	2 cut(s)	283, 856
BseXI	GCAGC	5 cut(s)	36, 234, 647, 650, 749
BsgI	GTGCAG	1 cut(s)	432
BshFI	GGCC	3 cut(s)	295, 451, 834
BsiHKAI	GWGCWC	1 cut(s)	283
BsiSI	CCGG	4 cut(s)	141, 216, 476, 966
BslFI	GGGAC	2 cut(s)	107, 668
BslI	CCNNNNNNNGG	2 cut(s)	44, 215
BsmAI	GTCTC	1 cut(s)	867
BsmBI	CGTCTC	1 cut(s)	867
BsmFI	GGGAC	2 cut(s)	107, 668
BsmI	GAATGC	3 cut(s)	64, 740, 860
BsnI	GGCC	3 cut(s)	295, 451, 834
Bsp119I	TTCGAA	1 cut(s)	253
Bsp1286I	GDGCHC	2 cut(s)	283, 856
Bsp143I	GATC	3 cut(s)	121, 463, 810
BspACI	CCGC	2 cut(s)	219, 751
BspANI	GGCC	3 cut(s)	295, 451, 834
BspLI	GGNNCC	2 cut(s)	387, 423
BspMI	ACCTGC	1 cut(s)	644
BspPI	GGATC	1 cut(s)	129
BspT104I	TTCGAA	1 cut(s)	253
BsrDI	GCAATG	1 cut(s)	840
BssECI	CCNNGG	3 cut(s)	141, 209, 829
BssMI	GATC	3 cut(s)	121, 463, 810
BssNI	GRCGYC	1 cut(s)	876
BssSI	CACGAG	1 cut(s)	181
BssT1I	CCWWGG	1 cut(s)	209
Bst2BI	CACGAG	1 cut(s)	181
Bst4CI	ACNGT	1 cut(s)	728
Bst6I	CTCTTC	4 cut(s)	250, 411, 567, 697
BstACI	GRCGYC	1 cut(s)	876
BstBI	TTCGAA	1 cut(s)	253
BstC8I	GCNNGC	7 cut(s)	29, 297, 489, 579, 583, 760, 928
BstDEI	CTNAG	1 cut(s)	805
BstDSI	CCRYGG	1 cut(s)	829
BstF5I	GGATG	3 cut(s)	137, 813, 825
BstHHI	GCGC	1 cut(s)	402
BstKTI	GATC	3 cut(s)	124, 466, 813
BstMAI	GTCTC	1 cut(s)	867
BstMBI	GATC	3 cut(s)	121, 463, 810
BstMWI	GCNNNNNNNGC	6 cut(s)	24, 143, 587, 759, 831, 851
BstNSI	RCATGY	2 cut(s)	31, 491
BstSCI	CCNGG	3 cut(s)	140, 475, 964
BstSLI	GKGCMC	2 cut(s)	283, 856
BstV1I	GCAGC	5 cut(s)	36, 234, 647, 650, 749
BstV2I	GAAGAC	1 cut(s)	234
BstX2I	RGATCY	1 cut(s)	463
BstXI	CCANNNNNNTGG	1 cut(s)	113
BstYI	RGATCY	1 cut(s)	463
BsuRI	GGCC	3 cut(s)	295, 451, 834
BtgI	CCRYGG	1 cut(s)	829
BtgZI	GCGATG	1 cut(s)	571
BtsCI	GGATG	3 cut(s)	137, 813, 825
BveI	ACCTGC	1 cut(s)	644
Cac8I	GCNNGC	7 cut(s)	29, 297, 489, 579, 583, 760, 928
CaiI	CAGNNNCTG	1 cut(s)	942
CfoI	GCGC	1 cut(s)	402
Cfr13I	GGNCC	2 cut(s)	213, 449
CviAII	CATG	7 cut(s)	28, 199, 347, 456, 488, 772, 904
DdeI	CTNAG	1 cut(s)	805
DpnI	GATC	3 cut(s)	123, 465, 812
DpnII	GATC	3 cut(s)	121, 463, 810
Eam1104I	CTCTTC	4 cut(s)	250, 411, 567, 697
EarI	CTCTTC	4 cut(s)	250, 411, 567, 697
Eco130I	CCWWGG	1 cut(s)	209
Eco47I	GGWCC	1 cut(s)	213
Eco57I	CTGAAG	4 cut(s)	153, 506, 548, 919
EcoT14I	CCWWGG	1 cut(s)	209
ErhI	CCWWGG	1 cut(s)	209
Esp3I	CGTCTC	1 cut(s)	867
FaeI	CATG	7 cut(s)	31, 202, 350, 459, 491, 775, 907
FaqI	GGGAC	2 cut(s)	107, 668
FatI	CATG	7 cut(s)	27, 198, 346, 455, 487, 771, 903
Fnu4HI	GCNGC	6 cut(s)	25, 220, 223, 661, 664, 763
FokI	GGATG	3 cut(s)	124, 800, 812
Fsp4HI	GCNGC	6 cut(s)	25, 220, 223, 661, 664, 763
FspBI	CTAG	2 cut(s)	210, 494
GlaI	GCGC	1 cut(s)	401
GluI	GCNGC	6 cut(s)	25, 220, 223, 661, 664, 763
HaeIII	GGCC	3 cut(s)	295, 451, 834
HapII	CCGG	4 cut(s)	141, 216, 476, 966
HhaI	GCGC	1 cut(s)	402
Hin1I	GRCGYC	1 cut(s)	876
Hin1II	CATG	7 cut(s)	31, 202, 350, 459, 491, 775, 907
Hin6I	GCGC	1 cut(s)	400
HinP1I	GCGC	1 cut(s)	400
HindIII	AAGCTT	1 cut(s)	160
HinfI	GANTC	3 cut(s)	128, 616, 939
HpaII	CCGG	4 cut(s)	141, 216, 476, 966
HphI	GGTGA	1 cut(s)	128
Hpy166II	GTNNAC	3 cut(s)	173, 281, 978
Hpy188I	TCNGA	4 cut(s)	133, 433, 733, 938
Hpy188III	TCNNGA	4 cut(s)	125, 272, 470, 865
Hpy8I	GTNNAC	3 cut(s)	173, 281, 978
HpyAV	CCTTC	2 cut(s)	232, 236
HpyCH4III	ACNGT	1 cut(s)	728
HpyCH4IV	ACGT	1 cut(s)	876
HpyF10VI	GCNNNNNNNGC	6 cut(s)	24, 143, 587, 759, 831, 851
HpyF3I	CTNAG	1 cut(s)	805
HpySE526I	ACGT	1 cut(s)	876
Hsp92I	GRCGYC	1 cut(s)	876
Hsp92II	CATG	7 cut(s)	31, 202, 350, 459, 491, 775, 907
HspAI	GCGC	1 cut(s)	400
Kzo9I	GATC	3 cut(s)	121, 463, 810
Lsp1109I	GCAGC	5 cut(s)	36, 234, 647, 650, 749
LweI	GCATC	7 cut(s)	146, 277, 308, 594, 834, 939, 966
MaeI	CTAG	2 cut(s)	210, 494
MaeII	ACGT	1 cut(s)	876
MaeIII	GTNAC	1 cut(s)	784
MalI	GATC	3 cut(s)	123, 465, 812
MboI	GATC	3 cut(s)	121, 463, 810
MflI	RGATCY	1 cut(s)	463
MhlI	GDGCHC	2 cut(s)	283, 856
MluCI	AATT	4 cut(s)	312, 504, 516, 920
MmeI	TCCRAC	2 cut(s)	30, 481
MnlI	CCTC	8 cut(s)	5, 112, 239, 435, 696, 845, 866, 922
MroXI	GAANNNNTTC	1 cut(s)	420
MseI	TTAA	2 cut(s)	444, 603
MslI	CAYNNNNRTG	2 cut(s)	286, 753
MspI	CCGG	4 cut(s)	141, 216, 476, 966
MspR9I	CCNGG	3 cut(s)	142, 477, 966
Mva1269I	GAATGC	3 cut(s)	64, 740, 860
MwoI	GCNNNNNNNGC	6 cut(s)	24, 143, 587, 759, 831, 851
NciI	CCSGG	3 cut(s)	142, 477, 966
NdeII	GATC	3 cut(s)	121, 463, 810
NlaIII	CATG	7 cut(s)	31, 202, 350, 459, 491, 775, 907
NlaIV	GGNNCC	2 cut(s)	387, 423
NspI	RCATGY	2 cut(s)	31, 491
NspV	TTCGAA	1 cut(s)	253
OliI	CACNNNNGTG	2 cut(s)	286, 753
PaeI	GCATGC	2 cut(s)	31, 491
PcsI	WCGNNNNNNNCGW	1 cut(s)	957
PctI	GAATGC	3 cut(s)	64, 740, 860
PdmI	GAANNNNTTC	1 cut(s)	420
PfeI	GAWTC	3 cut(s)	128, 616, 939
PflMI	CCANNNNNTGG	1 cut(s)	44
PfoI	TCCNGGA	1 cut(s)	964
PkrI	GCNGC	6 cut(s)	26, 221, 224, 662, 665, 764
PspN4I	GGNNCC	2 cut(s)	387, 423
PspPI	GGNCC	2 cut(s)	213, 449
PstNI	CAGNNNCTG	1 cut(s)	942
PsuI	RGATCY	1 cut(s)	463
RseI	CAYNNNNRTG	2 cut(s)	286, 753
SaqAI	TTAA	2 cut(s)	444, 603
SatI	GCNGC	6 cut(s)	25, 220, 223, 661, 664, 763
Sau3AI	GATC	3 cut(s)	121, 463, 810
Sau96I	GGNCC	2 cut(s)	213, 449
ScrFI	CCNGG	3 cut(s)	142, 477, 966
SduI	GDGCHC	2 cut(s)	283, 856
SetI	ASST	8 cut(s)	164, 215, 423, 439, 570, 629, 658, 879
SfaNI	GCATC	7 cut(s)	146, 277, 308, 594, 834, 939, 966
SfuI	TTCGAA	1 cut(s)	253
SinI	GGWCC	1 cut(s)	213
SmiMI	CAYNNNNRTG	2 cut(s)	286, 753
SmlI	CTYRAG	2 cut(s)	163, 380
SmoI	CTYRAG	2 cut(s)	163, 380
SpeI	ACTAGT	1 cut(s)	493
SphI	GCATGC	2 cut(s)	31, 491
Sse9I	AATT	4 cut(s)	312, 504, 516, 920
SsiI	CCGC	2 cut(s)	219, 751
SspMI	CTAG	2 cut(s)	210, 494
StyD4I	CCNGG	3 cut(s)	140, 475, 964
StyI	CCWWGG	1 cut(s)	209
TaaI	ACNGT	1 cut(s)	728
TaiI	ACGT	1 cut(s)	879
TaqI	TCGA	1 cut(s)	253
TasI	AATT	4 cut(s)	312, 504, 516, 920
TauI	GCSGC	1 cut(s)	222
TfiI	GAWTC	3 cut(s)	128, 616, 939
Tru1I	TTAA	2 cut(s)	444, 603
Tru9I	TTAA	2 cut(s)	444, 603
TseI	GCWGC	5 cut(s)	24, 222, 660, 663, 762
TspDTI	ATGAA	2 cut(s)	171, 335
TspGWI	ACGGA	1 cut(s)	904
Van91I	CCANNNNNTGG	1 cut(s)	44
VneI	GTGCAC	1 cut(s)	279
VpaK11BI	GGWCC	1 cut(s)	213
XapI	RAATTY	2 cut(s)	516, 920
XceI	RCATGY	2 cut(s)	31, 491
XmaJI	CCTAGG	1 cut(s)	209
XmnI	GAANNNNTTC	1 cut(s)	420
XspI	CTAG	2 cut(s)	210, 494
ZraI	GACGTC	1 cut(s)	877

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.