Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0021171

Physical Location & Seq

Genomic Coordinates Forward (+)

9143654 .. 9146023

Gene Structure 2370 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1112200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGGTCCTTTTGATATTGAGGAGGAGGAGCAAGAGCAACCATCCACTTCAGATGATTCACAATTTTTTCTTCATTAGGAGTTTGGCCAACTGTGTGAGTTGGCTTCGCACAGGCAAGGAAACATCATTGGAAGAGTTCATCCTTAGTCCCCCCAATGTGCTTACTGAAAATCAGGGAAATCAAATACGGCTATATGGTCCCGAAAAGGGCTTATCATACATCGCCAAACCTGCAACTGGACAGAGTTTTATATCTCACCACGGGAGCACGTTGAACCTAAGCATGCCTCTCGTGGATCCTCTGGTCACTCTCTTTGGCAGTGTCCACGAGAAGATGTCCGAAAGGGGAAGCAAAGGCAGCATGCTTTATCCAAATCTTGGAAGCATTTTGAATGCAGGGGAGTATCATAATAAAAACGCACATTGGGACATAGAGAGCCAGACAGATGGTGAGGATCACGAATCTGAAGCATCCGGGGCTTATTGTGATGAAAGCTTGAGAAGTCCACTAATCTCGTGCCAAACAACAGGCATGGGAACGCCTAGGTCTTGCGGCAGTGCTTTAGGTGTGAGATGCAATACAATCTTGATGAAAGGAAATGTACAAGCTAGCGAGGCTATCAGTAGTAGTATGGACACTGGTGGAGGCGAAGACGGGAAGAAGGAAGGAGGAGTTCAAAAAGTGTATTTGCATCAGGATAGTGCACTTTGGTGTCGGCCTGCGTCGGTTGTTTCAATTTCTGGTGCATTCATGGTGGTCTGGTTAGTCAGCCTGATGTTTCAGAAACTTTCTTGTTTGTCAACCTTCTATGTTGTCGGGTGCATCGATTCTTGGATATTTGTTTACTTGAAGGTGCCTGAAACTAAGGGCATGCCTCTTGAAGTCATCTCTGAGTTCTTTGCTGCAGGTGTAAACCCAGCTGCTGCTGATGCATCTGCGGATTCCAATGAAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0046323 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098655 GO:0098660 GO:0098662 GO:1902600 GO:1904659

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

319

Amino Acids

34.6

Weight (kDa)

6.0

Isoelectric Point (pI)

50.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021171)

Species	Orthologous Gene IDs
malus_domestica	MD00G1158800.v1.1 MD02G1110100.v1.1 MD02G1112200.v1.1 MD02G1113300.v1.1
pyrus_communis	pycom02g08830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	896
Acc36I	ACCTGC	2 cut(s)	238, 896
AccB1I	GGYRCC	1 cut(s)	853
AccB7I	CCANNNNNTGG	1 cut(s)	377
AciI	CCGC	2 cut(s)	552, 938
AclWI	GGATC	3 cut(s)	290, 303, 462
AcoI	YGGCCR	1 cut(s)	84
AcuI	CTGAAG	2 cut(s)	32, 486
AfaI	GTAC	1 cut(s)	603
AfiI	CCNNNNNNNGG	3 cut(s)	206, 236, 377
AgsI	TTSAA	6 cut(s)	274, 391, 677, 735, 850, 881
AleI	CACNNNNGTG	1 cut(s)	709
AluBI	AGCT	3 cut(s)	495, 608, 920
AluI	AGCT	3 cut(s)	495, 608, 920
Alw21I	GWGCWC	2 cut(s)	269, 706
Alw44I	GTGCAC	1 cut(s)	702
AlwI	GGATC	3 cut(s)	290, 303, 462
AlwNI	CAGNNNCTG	1 cut(s)	923
AoxI	GGCC	2 cut(s)	84, 716
ApaLI	GTGCAC	1 cut(s)	702
ApeKI	GCWGC	4 cut(s)	357, 902, 920, 923
AspA2I	CCTAGG	1 cut(s)	542
AspS9I	GGNCC	2 cut(s)	4, 197
AsuC2I	CCSGG	1 cut(s)	475
AsuHPI	GGTGA	2 cut(s)	248, 461
AsuNHI	GCTAGC	1 cut(s)	608
AvaII	GGWCC	2 cut(s)	4, 197
AvrII	CCTAGG	1 cut(s)	542
BaeGI	GKGCMC	1 cut(s)	706
BalI	TGGCCA	1 cut(s)	86
BamHI	GGATCC	1 cut(s)	295
BanI	GGYRCC	1 cut(s)	853
BauI	CACGAG	3 cut(s)	290, 326, 514
BbsI	GAAGAC	1 cut(s)	657
Bbv12I	GWGCWC	2 cut(s)	269, 706
BbvI	GCAGC	4 cut(s)	369, 889, 907, 910
BccI	CCATC	2 cut(s)	48, 440
BceAI	ACGGC	1 cut(s)	203
BcgI	CGANNNNNNTGC	2 cut(s)	271, 305
BcnI	CCSGG	1 cut(s)	475
BfaI	CTAG	2 cut(s)	543, 609
BfmI	CTRYAG	1 cut(s)	903
BfuAI	ACCTGC	2 cut(s)	238, 896
BisI	GCNGC	5 cut(s)	358, 553, 903, 921, 924
BlnI	CCTAGG	1 cut(s)	542
BlsI	GCNGC	5 cut(s)	359, 554, 904, 922, 925
Bme1390I	CCNGG	1 cut(s)	475
Bme18I	GGWCC	2 cut(s)	4, 197
BmgT120I	GGNCC	2 cut(s)	4, 197
BmiI	GGNNCC	3 cut(s)	199, 297, 855
BmrFI	CCNGG	1 cut(s)	475
BmsI	GCATC	6 cut(s)	479, 563, 700, 831, 919, 941
BmtI	GCTAGC	1 cut(s)	612
BpiI	GAAGAC	1 cut(s)	657
Bpu10I	CCTNAGC	1 cut(s)	278
BpuEI	CTTGAG	1 cut(s)	517
BpuMI	CCSGG	1 cut(s)	475
Bsa29I	ATCGAT	1 cut(s)	825
BsaJI	CCNNGG	3 cut(s)	259, 474, 542
Bsc4I	CCNNNNNNNGG	3 cut(s)	206, 236, 377
Bse1I	ACTGG	2 cut(s)	241, 643
BseCI	ATCGAT	1 cut(s)	825
BseDI	CCNNGG	3 cut(s)	259, 474, 542
BseGI	GGATG	3 cut(s)	40, 138, 470
BseLI	CCNNNNNNNGG	3 cut(s)	206, 236, 377
BseMII	CTCAG	1 cut(s)	882
BseNI	ACTGG	2 cut(s)	241, 643
BseRI	GAGGAG	4 cut(s)	34, 37, 40, 684
BseSI	GKGCMC	1 cut(s)	706
BseXI	GCAGC	4 cut(s)	369, 889, 907, 910
BseYI	CCCAGC	1 cut(s)	916
BshFI	GGCC	2 cut(s)	86, 718
BshNI	GGYRCC	1 cut(s)	853
BshVI	ATCGAT	1 cut(s)	825
BsiHKAI	GWGCWC	2 cut(s)	269, 706
BsiSI	CCGG	1 cut(s)	474
BslFI	GGGAC	3 cut(s)	132, 183, 440
BslI	CCNNNNNNNGG	3 cut(s)	206, 236, 377
BsmFI	GGGAC	3 cut(s)	132, 183, 440
BsmI	GAATGC	2 cut(s)	397, 746
BsnI	GGCC	2 cut(s)	86, 718
Bsp1286I	GDGCHC	2 cut(s)	269, 706
Bsp1407I	TGTACA	1 cut(s)	601
Bsp143I	GATC	2 cut(s)	295, 454
BspACI	CCGC	2 cut(s)	552, 938
BspANI	GGCC	2 cut(s)	86, 718
BspCNI	CTCAG	1 cut(s)	883
BspDI	ATCGAT	1 cut(s)	825
BspLI	GGNNCC	3 cut(s)	199, 297, 855
BspMAI	CTGCAG	1 cut(s)	907
BspMI	ACCTGC	2 cut(s)	238, 896
BspOI	GCTAGC	1 cut(s)	612
BspPI	GGATC	3 cut(s)	290, 303, 462
BspT107I	GGYRCC	1 cut(s)	853
BsrGI	TGTACA	1 cut(s)	601
BsrI	ACTGG	2 cut(s)	241, 643
BssECI	CCNNGG	3 cut(s)	259, 474, 542
BssMI	GATC	2 cut(s)	295, 454
BssSI	CACGAG	3 cut(s)	290, 326, 514
BssT1I	CCWWGG	1 cut(s)	542
Bst2BI	CACGAG	3 cut(s)	290, 326, 514
Bst4CI	ACNGT	1 cut(s)	92
Bst6I	CTCTTC	1 cut(s)	126
BstAUI	TGTACA	1 cut(s)	601
BstC8I	GCNNGC	5 cut(s)	284, 362, 610, 720, 872
BstDEI	CTNAG	4 cut(s)	143, 278, 864, 891
BstDSI	CCRYGG	1 cut(s)	259
BstF5I	GGATG	3 cut(s)	40, 138, 470
BstKTI	GATC	2 cut(s)	298, 457
BstMBI	GATC	2 cut(s)	295, 454
BstMWI	GCNNNNNNNGC	5 cut(s)	230, 357, 476, 614, 929
BstNSI	RCATGY	3 cut(s)	286, 364, 874
BstSCI	CCNGG	1 cut(s)	473
BstSFI	CTRYAG	1 cut(s)	903
BstSLI	GKGCMC	1 cut(s)	706
BstV1I	GCAGC	4 cut(s)	369, 889, 907, 910
BstV2I	GAAGAC	1 cut(s)	657
BstX2I	RGATCY	1 cut(s)	295
BstXI	CCANNNNNNTGG	1 cut(s)	446
BstYI	RGATCY	1 cut(s)	295
Bsu15I	ATCGAT	1 cut(s)	825
BsuRI	GGCC	2 cut(s)	86, 718
BsuTUI	ATCGAT	1 cut(s)	825
BtgI	CCRYGG	1 cut(s)	259
BtgZI	GCGATG	1 cut(s)	205
BtsCI	GGATG	3 cut(s)	40, 138, 470
BtsI	GCAGTG	2 cut(s)	325, 562
BtsIMutI	CAGTG	3 cut(s)	325, 562, 636
BveI	ACCTGC	2 cut(s)	238, 896
Cac8I	GCNNGC	5 cut(s)	284, 362, 610, 720, 872
CaiI	CAGNNNCTG	1 cut(s)	923
Cfr13I	GGNCC	2 cut(s)	4, 197
ClaI	ATCGAT	1 cut(s)	825
CseI	GACGC	1 cut(s)	711
Csp6I	GTAC	1 cut(s)	602
CviAII	CATG	5 cut(s)	283, 361, 532, 751, 871
CviQI	GTAC	1 cut(s)	602
DdeI	CTNAG	4 cut(s)	143, 278, 864, 891
DpnI	GATC	2 cut(s)	297, 456
DpnII	GATC	2 cut(s)	295, 454
EaeI	YGGCCR	1 cut(s)	84
Eam1104I	CTCTTC	1 cut(s)	126
EarI	CTCTTC	1 cut(s)	126
Eco130I	CCWWGG	1 cut(s)	542
Eco47I	GGWCC	2 cut(s)	4, 197
Eco57I	CTGAAG	2 cut(s)	32, 486
EcoT14I	CCWWGG	1 cut(s)	542
EcoT22I	ATGCAT	1 cut(s)	934
ErhI	CCWWGG	1 cut(s)	542
FaeI	CATG	5 cut(s)	286, 364, 535, 754, 874
FaqI	GGGAC	3 cut(s)	132, 183, 440
FatI	CATG	5 cut(s)	282, 360, 531, 750, 870
Fnu4HI	GCNGC	5 cut(s)	358, 553, 903, 921, 924
FokI	GGATG	3 cut(s)	27, 125, 457
Fsp4HI	GCNGC	5 cut(s)	358, 553, 903, 921, 924
FspBI	CTAG	2 cut(s)	543, 609
GluI	GCNGC	5 cut(s)	358, 553, 903, 921, 924
GsaI	CCCAGC	1 cut(s)	920
HaeIII	GGCC	2 cut(s)	86, 718
HapII	CCGG	1 cut(s)	474
HgaI	GACGC	1 cut(s)	711
Hin1II	CATG	5 cut(s)	286, 364, 535, 754, 874
HincII	GTYRAC	1 cut(s)	801
HindII	GTYRAC	1 cut(s)	801
HindIII	AAGCTT	1 cut(s)	493
HinfI	GANTC	4 cut(s)	55, 461, 827, 941
HpaII	CCGG	1 cut(s)	474
HphI	GGTGA	2 cut(s)	248, 461
Hpy166II	GTNNAC	6 cut(s)	325, 506, 704, 801, 844, 913
Hpy188I	TCNGA	5 cut(s)	51, 340, 466, 783, 892
Hpy188III	TCNNGA	5 cut(s)	200, 458, 586, 695, 878
Hpy8I	GTNNAC	6 cut(s)	325, 506, 704, 801, 844, 913
Hpy99I	CGWCG	1 cut(s)	727
HpyAV	CCTTC	4 cut(s)	655, 659, 814, 844
HpyCH4III	ACNGT	1 cut(s)	92
HpyCH4IV	ACGT	1 cut(s)	269
HpyCH4V	TGCA	9 cut(s)	233, 395, 576, 691, 704, 746, 822, 905, 932
HpyF10VI	GCNNNNNNNGC	5 cut(s)	230, 357, 476, 614, 929
HpyF3I	CTNAG	4 cut(s)	143, 278, 864, 891
HpySE526I	ACGT	1 cut(s)	269
Hsp92II	CATG	5 cut(s)	286, 364, 535, 754, 874
Kzo9I	GATC	2 cut(s)	295, 454
LmnI	GCTCC	2 cut(s)	27, 264
Lsp1109I	GCAGC	4 cut(s)	369, 889, 907, 910
LweI	GCATC	6 cut(s)	479, 563, 700, 831, 919, 941
MaeI	CTAG	2 cut(s)	543, 609
MaeII	ACGT	1 cut(s)	269
MaeIII	GTNAC	1 cut(s)	304
MalI	GATC	2 cut(s)	297, 456
MboI	GATC	2 cut(s)	295, 454
MboII	GAAGA	5 cut(s)	61, 143, 343, 662, 670
MflI	RGATCY	1 cut(s)	295
MhlI	GDGCHC	2 cut(s)	269, 706
MlsI	TGGCCA	1 cut(s)	86
MluCI	AATT	2 cut(s)	61, 735
MluNI	TGGCCA	1 cut(s)	86
Mox20I	TGGCCA	1 cut(s)	86
Mph1103I	ATGCAT	1 cut(s)	934
MscI	TGGCCA	1 cut(s)	86
MslI	CAYNNNNRTG	1 cut(s)	709
Msp20I	TGGCCA	1 cut(s)	86
MspA1I	CMGCKG	1 cut(s)	920
MspI	CCGG	1 cut(s)	474
MspR9I	CCNGG	1 cut(s)	475
Mva1269I	GAATGC	2 cut(s)	397, 746
MwoI	GCNNNNNNNGC	5 cut(s)	230, 357, 476, 614, 929
NciI	CCSGG	1 cut(s)	475
NdeII	GATC	2 cut(s)	295, 454
NheI	GCTAGC	1 cut(s)	608
NlaIII	CATG	5 cut(s)	286, 364, 535, 754, 874
NlaIV	GGNNCC	3 cut(s)	199, 297, 855
NmuCI	GTSAC	1 cut(s)	304
NsiI	ATGCAT	1 cut(s)	934
NspI	RCATGY	3 cut(s)	286, 364, 874
OliI	CACNNNNGTG	1 cut(s)	709
PaeI	GCATGC	3 cut(s)	286, 364, 874
PaqCI	CACCTGC	1 cut(s)	896
PcsI	WCGNNNNNNNCGW	1 cut(s)	822
PctI	GAATGC	2 cut(s)	397, 746
PfeI	GAWTC	4 cut(s)	55, 461, 827, 941
PflMI	CCANNNNNTGG	1 cut(s)	377
PkrI	GCNGC	5 cut(s)	359, 554, 904, 922, 925
PspFI	CCCAGC	1 cut(s)	916
PspN4I	GGNNCC	3 cut(s)	199, 297, 855
PspPI	GGNCC	2 cut(s)	4, 197
PstI	CTGCAG	1 cut(s)	907
PstNI	CAGNNNCTG	1 cut(s)	923
PsuI	RGATCY	1 cut(s)	295
PvuII	CAGCTG	1 cut(s)	920
RsaI	GTAC	1 cut(s)	603
RsaNI	GTAC	1 cut(s)	602
RseI	CAYNNNNRTG	1 cut(s)	709
SatI	GCNGC	5 cut(s)	358, 553, 903, 921, 924
Sau3AI	GATC	2 cut(s)	295, 454
Sau96I	GGNCC	2 cut(s)	4, 197
ScrFI	CCNGG	1 cut(s)	475
SduI	GDGCHC	2 cut(s)	269, 706
SfaNI	GCATC	6 cut(s)	479, 563, 700, 831, 919, 941
SfcI	CTRYAG	1 cut(s)	903
SinI	GGWCC	2 cut(s)	4, 197
SmiMI	CAYNNNNRTG	1 cut(s)	709
SmlI	CTYRAG	1 cut(s)	496
SmoI	CTYRAG	1 cut(s)	496
SphI	GCATGC	3 cut(s)	286, 364, 874
Sse9I	AATT	2 cut(s)	61, 735
SsiI	CCGC	2 cut(s)	552, 938
SspMI	CTAG	2 cut(s)	543, 609
StyD4I	CCNGG	1 cut(s)	473
StyI	CCWWGG	1 cut(s)	542
TaaI	ACNGT	1 cut(s)	92
TaiI	ACGT	1 cut(s)	272
TaqI	TCGA	1 cut(s)	825
TasI	AATT	2 cut(s)	61, 735
TatI	WGTACW	1 cut(s)	601
TauI	GCSGC	1 cut(s)	555
TfiI	GAWTC	4 cut(s)	55, 461, 827, 941
TscAI	CASTG	3 cut(s)	325, 562, 643
TseFI	GTSAC	1 cut(s)	304
TseI	GCWGC	4 cut(s)	357, 902, 920, 923
Tsp45I	GTSAC	1 cut(s)	304
TspDTI	ATGAA	5 cut(s)	61, 127, 504, 605, 739
TspRI	CASTG	3 cut(s)	325, 562, 643
Van91I	CCANNNNNTGG	1 cut(s)	377
VneI	GTGCAC	1 cut(s)	702
VpaK11BI	GGWCC	2 cut(s)	4, 197
XceI	RCATGY	3 cut(s)	286, 364, 874
XmaJI	CCTAGG	1 cut(s)	542
XspI	CTAG	2 cut(s)	543, 609
Zsp2I	ATGCAT	1 cut(s)	934

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.