MD00G1165500.v1.1

Dolichol kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0008091
Physical Location & Seq
Forward (+)
37695343 .. 37695950
608 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1165500.v1.1.491

Sequence Viewer

Length: 318 bp
ATGGCGGCCATGGTGATGGCGATGGCCGGAATGATGAACGGAGAGAGAGCCGTGGTGTTTCTGTTCATTACTCGCGTCCTCTTCTCCCTCCCCTTCTCTCTCATCTCCCACGGCGTCGCTCTCTCTCTCCTCGCCCTCTCCGCCCTCTCCCTCGACATCCTCGCCGATTCTTCCACCTCCCTTTCCCAATTCAGCACCAGGCCGGGTGCTTCGTCGGGTATATTGTTAGGGGCTGTCACGTTGCCCGCTGTTTTCATATCCAAGATGATGGTACTATTAATTACTTATGGCCCAACGCTTCACGCATCAACCAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00510 ko01100 map00510 map01100
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

10.91

Weight (kDa)

8.38

Isoelectric Point (pI)

27.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 75
AciI CCGC 3 cut(s) 5, 141, 246
AcoI YGGCCR 2 cut(s) 6, 24
AcyI GRCGYC 1 cut(s) 114
AfaI GTAC 1 cut(s) 273
AjnI CCWGG 1 cut(s) 197
AoxI GGCC 4 cut(s) 6, 24, 200, 289
AseI ATTAAT 1 cut(s) 278
AspS9I GGNCC 1 cut(s) 290
AsuC2I CCSGG 1 cut(s) 204
AsuHPI GGTGA 1 cut(s) 25
BccI CCATC 3 cut(s) 10, 16, 262
BceAI ACGGC 2 cut(s) 35, 127
BciT130I CCWGG 1 cut(s) 199
BcnI CCSGG 1 cut(s) 204
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme1390I CCNGG 2 cut(s) 199, 204
BmgT120I GGNCC 1 cut(s) 290
BmrFI CCNGG 2 cut(s) 199, 204
BmsI GCATC 1 cut(s) 314
BpuMI CCSGG 1 cut(s) 204
BsaHI GRCGYC 1 cut(s) 114
BsaJI CCNNGG 3 cut(s) 9, 51, 109
Bse1I ACTGG 1 cut(s) 312
BseBI CCWGG 1 cut(s) 199
BseDI CCNNGG 3 cut(s) 9, 51, 109
BseGI GGATG 1 cut(s) 156
BseNI ACTGG 1 cut(s) 312
BseRI GAGGAG 1 cut(s) 119
Bsh1236I CGCG 1 cut(s) 75
BshFI GGCC 4 cut(s) 8, 26, 202, 291
BsiSI CCGG 2 cut(s) 27, 203
BsnI GGCC 4 cut(s) 8, 26, 202, 291
Bsp19I CCATGG 1 cut(s) 9
BspACI CCGC 3 cut(s) 5, 141, 246
BspANI GGCC 4 cut(s) 8, 26, 202, 291
BspFNI CGCG 1 cut(s) 75
BsrI ACTGG 1 cut(s) 312
BssECI CCNNGG 3 cut(s) 9, 51, 109
BssNI GRCGYC 1 cut(s) 114
BssT1I CCWWGG 1 cut(s) 9
Bst2UI CCWGG 1 cut(s) 199
Bst6I CTCTTC 1 cut(s) 86
BstACI GRCGYC 1 cut(s) 114
BstC8I GCNNGC 1 cut(s) 246
BstDSI CCRYGG 3 cut(s) 9, 51, 109
BstF5I GGATG 1 cut(s) 156
BstFNI CGCG 1 cut(s) 75
BstMWI GCNNNNNNNGC 1 cut(s) 140
BstNI CCWGG 1 cut(s) 199
BstSCI CCNGG 2 cut(s) 197, 202
BstUI CGCG 1 cut(s) 75
BstXI CCANNNNNNTGG 2 cut(s) 16, 268
BsuRI GGCC 4 cut(s) 8, 26, 202, 291
BtgI CCRYGG 3 cut(s) 9, 51, 109
BtgZI GCGATG 1 cut(s) 35
BtsCI GGATG 1 cut(s) 156
Cac8I GCNNGC 1 cut(s) 246
Cfr13I GGNCC 1 cut(s) 290
CseI GACGC 2 cut(s) 64, 103
Csp6I GTAC 1 cut(s) 272
CviAII CATG 1 cut(s) 10
CviJI RGCY 6 cut(s) 8, 26, 50, 202, 233, 291
CviKI_1 RGCY 6 cut(s) 8, 26, 50, 202, 233, 291
CviQI GTAC 1 cut(s) 272
EaeI YGGCCR 2 cut(s) 6, 24
Eam1104I CTCTTC 1 cut(s) 86
EarI CTCTTC 1 cut(s) 86
EciI GGCGGA 1 cut(s) 130
Eco130I CCWWGG 1 cut(s) 9
EcoRII CCWGG 1 cut(s) 197
EcoT14I CCWWGG 1 cut(s) 9
ErhI CCWWGG 1 cut(s) 9
FaeI CATG 1 cut(s) 13
FaiI YATR 4 cut(s) 11, 221, 257, 288
FatI CATG 1 cut(s) 9
FauI CCCGC 1 cut(s) 253
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 1 cut(s) 143
Fsp4HI GCNGC 1 cut(s) 6
GluI GCNGC 1 cut(s) 6
HaeIII GGCC 4 cut(s) 8, 26, 202, 291
HapII CCGG 2 cut(s) 27, 203
HgaI GACGC 2 cut(s) 64, 103
Hin1I GRCGYC 1 cut(s) 114
Hin1II CATG 1 cut(s) 13
HinfI GANTC 1 cut(s) 167
HpaII CCGG 2 cut(s) 27, 203
HphI GGTGA 1 cut(s) 25
Hpy99I CGWCG 2 cut(s) 119, 217
HpyAV CCTTC 1 cut(s) 103
HpyCH4IV ACGT 1 cut(s) 239
HpyF10VI GCNNNNNNNGC 1 cut(s) 140
HpySE526I ACGT 1 cut(s) 239
Hsp92I GRCGYC 1 cut(s) 114
Hsp92II CATG 1 cut(s) 13
LpnPI CCDG 4 cut(s) 40, 184, 211, 216
LweI GCATC 1 cut(s) 314
MaeII ACGT 1 cut(s) 239
MaeIII GTNAC 1 cut(s) 235
MboII GAAGA 2 cut(s) 73, 162
MluCI AATT 2 cut(s) 188, 279
MnlI CCTC 8 cut(s) 89, 98, 140, 146, 155, 161, 170, 187
MseI TTAA 1 cut(s) 278
MslI CAYNNNNRTG 1 cut(s) 14
MspA1I CMGCKG 1 cut(s) 248
MspI CCGG 2 cut(s) 27, 203
MspR9I CCNGG 2 cut(s) 199, 204
MvaI CCWGG 1 cut(s) 199
MvnI CGCG 1 cut(s) 75
MwoI GCNNNNNNNGC 1 cut(s) 140
NciI CCSGG 1 cut(s) 204
NcoI CCATGG 1 cut(s) 9
NlaIII CATG 1 cut(s) 13
NmuCI GTSAC 1 cut(s) 235
PfeI GAWTC 1 cut(s) 167
PkrI GCNGC 1 cut(s) 7
PshBI ATTAAT 1 cut(s) 278
Psp6I CCWGG 1 cut(s) 197
PspGI CCWGG 1 cut(s) 197
PspPI GGNCC 1 cut(s) 290
RsaI GTAC 1 cut(s) 273
RsaNI GTAC 1 cut(s) 272
RseI CAYNNNNRTG 1 cut(s) 14
SaqAI TTAA 1 cut(s) 278
SatI GCNGC 1 cut(s) 6
Sau96I GGNCC 1 cut(s) 290
ScrFI CCNGG 2 cut(s) 199, 204
SetI ASST 2 cut(s) 179, 242
SfaNI GCATC 1 cut(s) 314
SmiMI CAYNNNNRTG 1 cut(s) 14
Sse9I AATT 2 cut(s) 188, 279
SsiI CCGC 3 cut(s) 5, 141, 246
StyD4I CCNGG 2 cut(s) 197, 202
StyI CCWWGG 1 cut(s) 9
TaiI ACGT 1 cut(s) 242
TaqI TCGA 1 cut(s) 153
TasI AATT 2 cut(s) 188, 279
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 1 cut(s) 167
Tru1I TTAA 1 cut(s) 278
Tru9I TTAA 1 cut(s) 278
TseFI GTSAC 1 cut(s) 235
Tsp45I GTSAC 1 cut(s) 235
TspDTI ATGAA 3 cut(s) 50, 55, 244
TspGWI ACGGA 1 cut(s) 54
VspI ATTAAT 1 cut(s) 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.