Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0008091

Physical Location & Seq

Genomic Coordinates Reverse (-)

23618949 .. 23619518

Gene Structure 570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0236400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGGCAGAAATCGAAGCCACCATCGCCGGCGGCAAACTGATGGAGATTCATAAAGTACGTGTGGATAAGAATGGTAACTACATTCCAGAATTTTCTGATCGTGTTGCTTACATGTCTTGTTTACGTTGTGGTATGAGGGGTGACCACTGGGATCCCTTTTGCCCCAACTCGATCAATGATCCGCCAGACTCAGGAGAAGCTGCTCGAGTCACGGGCAGGTCATGGAATTACATATTGAGGAATTTCAATCTGAAAGAATATCTTGACAAAAGGAATAAGACTGATGGGAAACCAGAGAACCACCACGGAGGAAGGCGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00510 ko01100 map00510 map01100

Pfam Domains

Protein Families

No domains found.

Protein Analysis

106

Amino Acids

12.14

Weight (kDa)

8.49

Isoelectric Point (pI)

53.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45040 AT3G45040 AT3G45040
fragaria_vesca	FvH4_1g24650 FvH4_1g24650 FvH4_1g24650 FvH4_1g24650 FvH4_1g24650 FvH4_1g24650 FvH4_1g24650
malus_domestica	MD00G1165500.v1.1 MD11G1145200.v1.1
prunus_persica	Prupe.6G108100_v2.0.a1
pyrus_communis	pycom11g11840
rosa_chinensis	RchiOBHm_Chr2g0122071
rosa_laevigata	RLG00000018647
rosa_multiflora	Rmu_co8516961.1_g000001
rosa_roxburghii	Rroxscaffold_2G00122030
rosa_rugosa	Rorug02G0236400
rosa_samantha	Rh2AG292700 Rh2BG303300 Rh2CG281800 Rh2DG316900
rosa_wichuraiana	Rw2G023490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	207
AciI	CCGC	3 cut(s)	30, 182, 316
AclWI	GGATC	3 cut(s)	146, 159, 173
AcsI	RAATTY	2 cut(s)	89, 241
AfaI	GTAC	1 cut(s)	57
AfiI	CCNNNNNNNGG	1 cut(s)	191
AflIII	ACRYGT	2 cut(s)	58, 111
AgsI	TTSAA	1 cut(s)	247
AluBI	AGCT	1 cut(s)	200
AluI	AGCT	1 cut(s)	200
AlwI	GGATC	3 cut(s)	146, 159, 173
Ama87I	CYCGRG	1 cut(s)	204
ApeKI	GCWGC	1 cut(s)	200
ApoI	RAATTY	2 cut(s)	89, 241
AsuHPI	GGTGA	1 cut(s)	152
AvaI	CYCGRG	1 cut(s)	204
BamHI	GGATCC	1 cut(s)	151
BbvI	GCAGC	1 cut(s)	187
BccI	CCATC	3 cut(s)	29, 34, 278
BfuAI	ACCTGC	1 cut(s)	207
BisI	GCNGC	2 cut(s)	31, 201
BlsI	GCNGC	2 cut(s)	32, 202
BmeT110I	CYCGRG	1 cut(s)	204
BmiI	GGNNCC	1 cut(s)	153
BmrI	ACTGGG	1 cut(s)	157
BmuI	ACTGGG	1 cut(s)	157
BsaAI	YACGTR	1 cut(s)	59
BsaJI	CCNNGG	1 cut(s)	304
Bsc4I	CCNNNNNNNGG	1 cut(s)	191
Bse118I	RCCGGY	1 cut(s)	26
Bse1I	ACTGG	1 cut(s)	152
BseDI	CCNNGG	1 cut(s)	304
BseLI	CCNNNNNNNGG	1 cut(s)	191
BseMII	CTCAG	1 cut(s)	204
BseNI	ACTGG	1 cut(s)	152
BseXI	GCAGC	1 cut(s)	187
BsiHKCI	CYCGRG	1 cut(s)	204
BsiSI	CCGG	1 cut(s)	27
BslI	CCNNNNNNNGG	1 cut(s)	191
BsoBI	CYCGRG	1 cut(s)	204
Bsp143I	GATC	4 cut(s)	97, 151, 171, 178
BspACI	CCGC	3 cut(s)	30, 182, 316
BspCNI	CTCAG	1 cut(s)	203
BspLI	GGNNCC	1 cut(s)	153
BspMI	ACCTGC	1 cut(s)	207
BspPI	GGATC	3 cut(s)	146, 159, 173
BsrFI	RCCGGY	1 cut(s)	26
BsrI	ACTGG	1 cut(s)	152
BssAI	RCCGGY	1 cut(s)	26
BssECI	CCNNGG	1 cut(s)	304
BssMI	GATC	4 cut(s)	97, 151, 171, 178
BstBAI	YACGTR	1 cut(s)	59
BstC8I	GCNNGC	1 cut(s)	28
BstDEI	CTNAG	1 cut(s)	190
BstDSI	CCRYGG	1 cut(s)	304
BstEII	GGTNACC	1 cut(s)	140
BstKTI	GATC	4 cut(s)	100, 154, 174, 181
BstMBI	GATC	4 cut(s)	97, 151, 171, 178
BstMWI	GCNNNNNNNGC	1 cut(s)	23
BstNSI	RCATGY	1 cut(s)	115
BstPI	GGTNACC	1 cut(s)	140
BstV1I	GCAGC	1 cut(s)	187
BstX2I	RGATCY	1 cut(s)	151
BstYI	RGATCY	1 cut(s)	151
BtgI	CCRYGG	1 cut(s)	304
BtgZI	GCGATG	1 cut(s)	7
BtsIMutI	CAGTG	1 cut(s)	145
BveI	ACCTGC	1 cut(s)	207
Cac8I	GCNNGC	1 cut(s)	28
Cfr10I	RCCGGY	1 cut(s)	26
Csp6I	GTAC	1 cut(s)	56
CviAII	CATG	2 cut(s)	112, 222
CviJI	RGCY	2 cut(s)	17, 200
CviKI_1	RGCY	2 cut(s)	17, 200
CviQI	GTAC	1 cut(s)	56
DdeI	CTNAG	1 cut(s)	190
DpnI	GATC	4 cut(s)	99, 153, 173, 180
DpnII	GATC	4 cut(s)	97, 151, 171, 178
EciI	GGCGGA	1 cut(s)	171
Eco88I	CYCGRG	1 cut(s)	204
Eco91I	GGTNACC	1 cut(s)	140
EcoO65I	GGTNACC	1 cut(s)	140
FaeI	CATG	2 cut(s)	115, 225
FaiI	YATR	5 cut(s)	51, 113, 134, 223, 233
FalI	AAGNNNNNCTT	2 cut(s)	246, 278
FatI	CATG	2 cut(s)	111, 221
Fnu4HI	GCNGC	2 cut(s)	31, 201
Fsp4HI	GCNGC	2 cut(s)	31, 201
GluI	GCNGC	2 cut(s)	31, 201
HapII	CCGG	1 cut(s)	27
Hin1II	CATG	2 cut(s)	115, 225
HinfI	GANTC	3 cut(s)	46, 188, 207
HpaII	CCGG	1 cut(s)	27
HphI	GGTGA	1 cut(s)	152
Hpy166II	GTNNAC	1 cut(s)	122
Hpy188I	TCNGA	2 cut(s)	97, 252
Hpy188III	TCNNGA	3 cut(s)	86, 192, 263
Hpy8I	GTNNAC	1 cut(s)	122
HpyAV	CCTTC	1 cut(s)	306
HpyCH4IV	ACGT	2 cut(s)	58, 124
HpyF10VI	GCNNNNNNNGC	1 cut(s)	23
HpyF3I	CTNAG	1 cut(s)	190
HpySE526I	ACGT	2 cut(s)	58, 124
Hsp92II	CATG	2 cut(s)	115, 225
KroI	GCCGGC	1 cut(s)	26
KroNI	GCCGGC	1 cut(s)	28
Kzo9I	GATC	4 cut(s)	97, 151, 171, 178
LpnPI	CCDG	7 cut(s)	40, 99, 133, 177, 198, 202, 306
Lsp1109I	GCAGC	1 cut(s)	187
MaeII	ACGT	2 cut(s)	58, 124
MaeIII	GTNAC	3 cut(s)	74, 140, 208
MalI	GATC	4 cut(s)	99, 153, 173, 180
MboI	GATC	4 cut(s)	97, 151, 171, 178
MflI	RGATCY	1 cut(s)	151
MluCI	AATT	3 cut(s)	89, 226, 241
MlyI	GAGTC	2 cut(s)	182, 216
MnlI	CCTC	3 cut(s)	129, 231, 302
MreI	CGCCGGCG	1 cut(s)	26
MroNI	GCCGGC	1 cut(s)	26
MspI	CCGG	1 cut(s)	27
MwoI	GCNNNNNNNGC	1 cut(s)	23
NaeI	GCCGGC	1 cut(s)	28
NdeII	GATC	4 cut(s)	97, 151, 171, 178
NgoMIV	GCCGGC	1 cut(s)	26
NlaIII	CATG	2 cut(s)	115, 225
NlaIV	GGNNCC	1 cut(s)	153
NmuCI	GTSAC	2 cut(s)	140, 208
NspI	RCATGY	1 cut(s)	115
PaeR7I	CTCGAG	1 cut(s)	204
PciI	ACATGT	1 cut(s)	111
PdiI	GCCGGC	1 cut(s)	28
PfeI	GAWTC	1 cut(s)	46
PkrI	GCNGC	2 cut(s)	32, 202
PleI	GAGTC	2 cut(s)	182, 215
PpsI	GAGTC	2 cut(s)	182, 215
Ppu21I	YACGTR	1 cut(s)	59
PscI	ACATGT	1 cut(s)	111
PspEI	GGTNACC	1 cut(s)	140
PspN4I	GGNNCC	1 cut(s)	153
PspXI	VCTCGAGB	1 cut(s)	204
PsuI	RGATCY	1 cut(s)	151
RsaI	GTAC	1 cut(s)	57
RsaNI	GTAC	1 cut(s)	56
SatI	GCNGC	2 cut(s)	31, 201
Sau3AI	GATC	4 cut(s)	97, 151, 171, 178
SchI	GAGTC	2 cut(s)	182, 216
SetI	ASST	4 cut(s)	61, 127, 202, 221
Sfr274I	CTCGAG	1 cut(s)	204
SgrAI	CRCCGGYG	1 cut(s)	26
SlaI	CTCGAG	1 cut(s)	204
SmlI	CTYRAG	1 cut(s)	204
SmoI	CTYRAG	1 cut(s)	204
Sse9I	AATT	3 cut(s)	89, 226, 241
SsiI	CCGC	3 cut(s)	30, 182, 316
TaiI	ACGT	2 cut(s)	61, 127
TaqI	TCGA	3 cut(s)	12, 170, 205
TasI	AATT	3 cut(s)	89, 226, 241
TauI	GCSGC	1 cut(s)	33
TfiI	GAWTC	1 cut(s)	46
TscAI	CASTG	1 cut(s)	152
TseFI	GTSAC	2 cut(s)	140, 208
TseI	GCWGC	1 cut(s)	200
Tsp45I	GTSAC	2 cut(s)	140, 208
TspDTI	ATGAA	1 cut(s)	38
TspGWI	ACGGA	1 cut(s)	321
TspRI	CASTG	1 cut(s)	152
XapI	RAATTY	2 cut(s)	89, 241
XceI	RCATGY	1 cut(s)	115
XhoI	CTCGAG	1 cut(s)	204

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.