Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8516961.1

Orthogroup ID

OG0008091

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 4007

Gene Structure 4007 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8516961.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1400 bp

agcttgaatctttgacgatgcaatactgggccatttctgccagttccttgagtgtacttatattcctctgcatcactatatggtgtgcacctgggaataagcctcccccttctttacgcagtgtttggcattcaattttaagcttaagttgcatagtattgcacacagcagtgtgttgtgtaactcttggtacatcatctcatacaagctctgaggctgcgttgaagttattgtggatgctctgtcatggattggcagttgtaaaattaattcaacatgttttcagaacttttccatcttgtgcttcgattggggaagcgtgtctagtggcttcaggtcttgttctctattttggtgacatgttggcatatactattgcaaaggtgtctggcttctcaattaaatcagatatggtacaatatggaagtaaaacaaacgagataaatattattatacagggtttgctgcttggccttcttctttttccagtggtctttaaacttgttctccgaatgtgggaatgctctttcagtacggcccgctctgaagtgaggacaaacaatgaaacttggagatcagttatattcttttcgtctctcggatttatcttgattgtgatcattccagcgtggatgcagtttgttcaggattttcatatgcacccgttcttatgggtactgtcatttattttttcggaaccactcaagagattatctctgtgtggctactgggtttgtgtgatatgtgtgtctgttatgaggttctacaacatttcaaagaatagtaagattgagagaattttactccgaaaatactaccatctgatggctgtgttaatgtttgtgcctgctcttatcttccagccagagtttcttgatctagcatttggtgcagctttggcagtttttttggcattggaaattgttcgagtatggagaatttggccactgggacaatttatacataaattcatgagtgctttcaccgatcatcgcgactcagatcttcttattgtcagccacttttcactcttgttgggatgcgctcttcctatttggatgtcttctgggtataatgatcgacctctagcccctttttctggaattttaagtcttggaattggagatacaatggcatcagttgttgggcacaagtacggggtactcaggtggagcaaaactggaaagaaaaccgttgaagggactgcagctggtataacatctgtcctagctgcttgctctgtgttgcttccccttctagcatctactggatatattgttaccgagcattggatctctattctagtagctgggactgtaagtggtttgctggaggcttacacagcacaacttgacaatgctttcataccactcattttctacagccttctctgtttgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00510 ko01100 map00510 map01100

Pfam Domains

Protein Families

No domains found.

Protein Analysis

465

Amino Acids

51.65

Weight (kDa)

8.67

Isoelectric Point (pI)

39.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008091)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45040 AT3G45040 AT3G45040
fragaria_vesca	FvH4_1g24650 FvH4_1g24650 FvH4_1g24650 FvH4_1g24650 FvH4_1g24650 FvH4_1g24650 FvH4_1g24650
malus_domestica	MD00G1165500.v1.1 MD11G1145200.v1.1
prunus_persica	Prupe.6G108100_v2.0.a1
pyrus_communis	pycom11g11840
rosa_chinensis	RchiOBHm_Chr2g0122071
rosa_laevigata	RLG00000018647
rosa_multiflora	Rmu_co8516961.1_g000001
rosa_roxburghii	Rroxscaffold_2G00122030
rosa_rugosa	Rorug02G0236400
rosa_samantha	Rh2AG292700 Rh2BG303300 Rh2CG281800 Rh2DG316900
rosa_wichuraiana	Rw2G023490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	825
AccBSI	CCGCTC	1 cut(s)	542
AccII	CGCG	1 cut(s)	995
AciI	CCGC	1 cut(s)	540
AclWI	GGATC	1 cut(s)	1300
AcoI	YGGCCR	1 cut(s)	943
AcsI	RAATTY	4 cut(s)	797, 938, 967, 1103
AcuI	CTGAAG	2 cut(s)	317, 566
AfaI	GTAC	7 cut(s)	56, 192, 416, 534, 677, 1156, 1163
AfiI	CCNNNNNNNGG	5 cut(s)	516, 825, 1099, 1199, 1289
AflII	CTTAAG	1 cut(s)	144
AflIII	ACRYGT	2 cut(s)	276, 359
AgsI	TTSAA	6 cut(s)	7, 134, 225, 274, 776, 1198
AjnI	CCWGG	1 cut(s)	90
AleI	CACNNNNGTG	1 cut(s)	169
AluBI	AGCT	7 cut(s)	3, 143, 209, 895, 1210, 1231, 1309
AluI	AGCT	7 cut(s)	3, 143, 209, 895, 1210, 1231, 1309
Alw21I	GWGCWC	1 cut(s)	90
Alw26I	GTCTC	1 cut(s)	599
Alw44I	GTGCAC	1 cut(s)	86
AlwI	GGATC	1 cut(s)	1300
AoxI	GGCC	4 cut(s)	29, 471, 536, 943
ApaLI	GTGCAC	1 cut(s)	86
ApeKI	GCWGC	5 cut(s)	217, 465, 892, 1207, 1231
ApoI	RAATTY	4 cut(s)	797, 938, 967, 1103
AseI	ATTAAT	1 cut(s)	268
Asp700I	GAANNNNTTC	1 cut(s)	923
AspLEI	GCGC	1 cut(s)	1045
AspS9I	GGNCC	2 cut(s)	29, 537
AsuHPI	GGTGA	2 cut(s)	367, 975
BaeGI	GKGCMC	2 cut(s)	90, 1151
BaeI	ACNNNNGTAYC	2 cut(s)	1153, 1186
BalI	TGGCCA	1 cut(s)	945
BbsI	GAAGAC	1 cut(s)	1055
Bbv12I	GWGCWC	1 cut(s)	90
BbvI	GCAGC	5 cut(s)	204, 452, 904, 1218, 1219
BccI	CCATC	3 cut(s)	303, 819, 827
BceAI	ACGGC	1 cut(s)	551
BciT130I	CCWGG	1 cut(s)	92
BclI	TGATCA	1 cut(s)	617
BcoDI	GTCTC	1 cut(s)	599
BfaI	CTAG	6 cut(s)	325, 880, 1087, 1228, 1258, 1303
BfmI	CTRYAG	2 cut(s)	1205, 1380
BfrI	CTTAAG	1 cut(s)	144
BglII	AGATCT	1 cut(s)	1002
BisI	GCNGC	5 cut(s)	218, 466, 893, 1208, 1232
BlsI	GCNGC	5 cut(s)	219, 467, 894, 1209, 1233
Bme1390I	CCNGG	1 cut(s)	92
BmgT120I	GGNCC	2 cut(s)	29, 537
BmiI	GGNNCC	1 cut(s)	698
BmrFI	CCNGG	1 cut(s)	92
BmrI	ACTGGG	3 cut(s)	36, 738, 958
BmsI	GCATC	7 cut(s)	8, 80, 227, 623, 1030, 1144, 1270
BmuI	ACTGGG	3 cut(s)	36, 738, 958
BpiI	GAAGAC	1 cut(s)	1055
BplI	GAGNNNNNCTC	2 cut(s)	699, 731
BpmI	CTGGAG	1 cut(s)	1351
BpuEI	CTTGAG	2 cut(s)	69, 688
BsaBI	GATNNNNATC	1 cut(s)	616
BsaJI	CCNNGG	1 cut(s)	91
BsaXI	ACNNNNNCTCC	2 cut(s)	491, 521
Bsc4I	CCNNNNNNNGG	5 cut(s)	516, 825, 1099, 1199, 1289
Bse1I	ACTGG	7 cut(s)	31, 41, 487, 733, 953, 1185, 1272
Bse8I	GATNNNNATC	1 cut(s)	616
BseBI	CCWGG	1 cut(s)	92
BseDI	CCNNGG	1 cut(s)	91
BseGI	GGATG	4 cut(s)	242, 638, 1045, 1064
BseJI	GATNNNNATC	1 cut(s)	616
BseLI	CCNNNNNNNGG	5 cut(s)	516, 825, 1099, 1199, 1289
BseMII	CTCAG	3 cut(s)	203, 1013, 1179
BseNI	ACTGG	7 cut(s)	31, 41, 487, 733, 953, 1185, 1272
BseSI	GKGCMC	2 cut(s)	90, 1151
BseXI	GCAGC	5 cut(s)	204, 452, 904, 1218, 1219
BseYI	CCCAGC	1 cut(s)	1309
BsgI	GTGCAG	1 cut(s)	911
Bsh1236I	CGCG	1 cut(s)	995
BshFI	GGCC	4 cut(s)	31, 473, 538, 945
BsiHKAI	GWGCWC	1 cut(s)	90
BslFI	GGGAC	3 cut(s)	965, 1215, 1326
BslI	CCNNNNNNNGG	5 cut(s)	516, 825, 1099, 1199, 1289
BsmAI	GTCTC	1 cut(s)	599
BsmBI	CGTCTC	1 cut(s)	599
BsmFI	GGGAC	3 cut(s)	965, 1215, 1326
BsmI	GAATGC	2 cut(s)	129, 526
BsnI	GGCC	4 cut(s)	31, 473, 538, 945
Bsp1286I	GDGCHC	2 cut(s)	90, 1151
Bsp143I	GATC	7 cut(s)	574, 617, 876, 987, 1002, 1077, 1292
Bsp68I	TCGCGA	1 cut(s)	995
BspACI	CCGC	1 cut(s)	540
BspANI	GGCC	4 cut(s)	31, 473, 538, 945
BspCNI	CTCAG	3 cut(s)	204, 1012, 1178
BspFNI	CGCG	1 cut(s)	995
BspHI	TCATGA	1 cut(s)	971
BspLI	GGNNCC	1 cut(s)	698
BspMAI	CTGCAG	1 cut(s)	1209
BspPI	GGATC	1 cut(s)	1300
BspQI	GCTCTTC	1 cut(s)	1052
BspTI	CTTAAG	1 cut(s)	144
BsrBI	CCGCTC	1 cut(s)	542
BsrI	ACTGG	7 cut(s)	31, 41, 487, 733, 953, 1185, 1272
BssECI	CCNNGG	1 cut(s)	91
BssMI	GATC	7 cut(s)	574, 617, 876, 987, 1002, 1077, 1292
Bst2UI	CCWGG	1 cut(s)	92
Bst4CI	ACNGT	3 cut(s)	680, 1194, 1317
Bst6I	CTCTTC	1 cut(s)	1052
BstAFI	CTTAAG	1 cut(s)	144
BstAPI	GCANNNNNTGC	1 cut(s)	889
BstC8I	GCNNGC	3 cut(s)	540, 848, 1236
BstDEI	CTNAG	3 cut(s)	212, 999, 1165
BstF5I	GGATG	4 cut(s)	242, 638, 1045, 1064
BstFNI	CGCG	1 cut(s)	995
BstHHI	GCGC	1 cut(s)	1045
BstKTI	GATC	7 cut(s)	577, 620, 879, 990, 1005, 1080, 1295
BstMAI	GTCTC	1 cut(s)	599
BstMBI	GATC	7 cut(s)	574, 617, 876, 987, 1002, 1077, 1292
BstMWI	GCNNNNNNNGC	5 cut(s)	37, 149, 889, 898, 1342
BstNI	CCWGG	1 cut(s)	92
BstNSI	RCATGY	2 cut(s)	280, 363
BstSCI	CCNGG	1 cut(s)	90
BstSFI	CTRYAG	2 cut(s)	1205, 1380
BstSLI	GKGCMC	2 cut(s)	90, 1151
BstUI	CGCG	1 cut(s)	995
BstV1I	GCAGC	5 cut(s)	204, 452, 904, 1218, 1219
BstV2I	GAAGAC	1 cut(s)	1055
BstX2I	RGATCY	2 cut(s)	1002, 1292
BstYI	RGATCY	2 cut(s)	1002, 1292
BsuRI	GGCC	4 cut(s)	31, 473, 538, 945
BtgZI	GCGATG	1 cut(s)	976
BtsCI	GGATG	4 cut(s)	242, 638, 1045, 1064
BtsI	GCAGTG	2 cut(s)	126, 176
BtsIMutI	CAGTG	4 cut(s)	126, 176, 494, 946
BtuMI	TCGCGA	1 cut(s)	995
Cac8I	GCNNGC	3 cut(s)	540, 848, 1236
CciI	TCATGA	1 cut(s)	971
CfoI	GCGC	1 cut(s)	1045
Cfr13I	GGNCC	2 cut(s)	29, 537
Csp6I	GTAC	7 cut(s)	55, 191, 415, 533, 676, 1155, 1162
CviAII	CATG	4 cut(s)	247, 277, 360, 972
CviQI	GTAC	7 cut(s)	55, 191, 415, 533, 676, 1155, 1162
DdeI	CTNAG	3 cut(s)	212, 999, 1165
DpnI	GATC	7 cut(s)	576, 619, 878, 989, 1004, 1079, 1294
DpnII	GATC	7 cut(s)	574, 617, 876, 987, 1002, 1077, 1292
DraI	TTTAAA	1 cut(s)	498
EaeI	YGGCCR	1 cut(s)	943
Eam1104I	CTCTTC	1 cut(s)	1052
EarI	CTCTTC	1 cut(s)	1052
Eco57I	CTGAAG	2 cut(s)	317, 566
EcoRII	CCWGG	1 cut(s)	90
Esp3I	CGTCTC	1 cut(s)	599
FaeI	CATG	4 cut(s)	250, 280, 363, 975
FaqI	GGGAC	3 cut(s)	965, 1215, 1326
FatI	CATG	4 cut(s)	246, 276, 359, 971
FauI	CCCGC	1 cut(s)	547
FauNDI	CATATG	1 cut(s)	656
FbaI	TGATCA	1 cut(s)	617
Fnu4HI	GCNGC	5 cut(s)	218, 466, 893, 1208, 1232
FokI	GGATG	4 cut(s)	249, 645, 1052, 1071
Fsp4HI	GCNGC	5 cut(s)	218, 466, 893, 1208, 1232
FspBI	CTAG	6 cut(s)	325, 880, 1087, 1228, 1258, 1303
GlaI	GCGC	1 cut(s)	1044
GluI	GCNGC	5 cut(s)	218, 466, 893, 1208, 1232
GsaI	CCCAGC	1 cut(s)	1313
GsuI	CTGGAG	1 cut(s)	1351
HaeIII	GGCC	4 cut(s)	31, 473, 538, 945
HhaI	GCGC	1 cut(s)	1045
Hin1II	CATG	4 cut(s)	250, 280, 363, 975
Hin6I	GCGC	1 cut(s)	1043
HinP1I	GCGC	1 cut(s)	1043
HindIII	AAGCTT	1 cut(s)	141
HinfI	GANTC	2 cut(s)	7, 997
HphI	GGTGA	2 cut(s)	367, 975
Hpy166II	GTNNAC	2 cut(s)	55, 88
Hpy188III	TCNNGA	7 cut(s)	609, 646, 705, 874, 972, 994, 1100
Hpy8I	GTNNAC	2 cut(s)	55, 88
HpyAV	CCTTC	5 cut(s)	119, 484, 1192, 1264, 1396
HpyCH4III	ACNGT	3 cut(s)	680, 1194, 1317
HpyF10VI	GCNNNNNNNGC	5 cut(s)	37, 149, 889, 898, 1342
HpyF3I	CTNAG	3 cut(s)	212, 999, 1165
Hsp92II	CATG	4 cut(s)	250, 280, 363, 975
HspAI	GCGC	1 cut(s)	1043
Ksp22I	TGATCA	1 cut(s)	617
Kzo9I	GATC	7 cut(s)	574, 617, 876, 987, 1002, 1077, 1292
LguI	GCTCTTC	1 cut(s)	1052
LmnI	GCTCC	1 cut(s)	1172
Lsp1109I	GCAGC	5 cut(s)	204, 452, 904, 1218, 1219
LweI	GCATC	7 cut(s)	8, 80, 227, 623, 1030, 1144, 1270
MaeI	CTAG	6 cut(s)	325, 880, 1087, 1228, 1258, 1303
MaeIII	GTNAC	3 cut(s)	180, 355, 1278
MalI	GATC	7 cut(s)	576, 619, 878, 989, 1004, 1079, 1294
MbiI	CCGCTC	1 cut(s)	542
MboI	GATC	7 cut(s)	574, 617, 876, 987, 1002, 1077, 1292
MboII	GAAGA	5 cut(s)	469, 849, 997, 1039, 1055
MflI	RGATCY	2 cut(s)	1002, 1292
MhlI	GDGCHC	2 cut(s)	90, 1151
MlsI	TGGCCA	1 cut(s)	945
MluNI	TGGCCA	1 cut(s)	945
MlyI	GAGTC	1 cut(s)	991
MnlI	CCTC	7 cut(s)	76, 113, 207, 545, 752, 1094, 1326
Mox20I	TGGCCA	1 cut(s)	945
MroXI	GAANNNNTTC	1 cut(s)	923
MscI	TGGCCA	1 cut(s)	945
MseI	TTAA	7 cut(s)	139, 145, 268, 401, 497, 835, 1108
MslI	CAYNNNNRTG	1 cut(s)	169
Msp20I	TGGCCA	1 cut(s)	945
MspA1I	CMGCKG	1 cut(s)	1210
MspCI	CTTAAG	1 cut(s)	144
MspR9I	CCNGG	1 cut(s)	92
Mva1269I	GAATGC	2 cut(s)	129, 526
MvaI	CCWGG	1 cut(s)	92
MvnI	CGCG	1 cut(s)	995
MwoI	GCNNNNNNNGC	5 cut(s)	37, 149, 889, 898, 1342
NdeI	CATATG	1 cut(s)	656
NdeII	GATC	7 cut(s)	574, 617, 876, 987, 1002, 1077, 1292
NlaIII	CATG	4 cut(s)	250, 280, 363, 975
NlaIV	GGNNCC	1 cut(s)	698
NmuCI	GTSAC	1 cut(s)	355
NruI	TCGCGA	1 cut(s)	995
NspI	RCATGY	2 cut(s)	280, 363
OliI	CACNNNNGTG	1 cut(s)	169
PagI	TCATGA	1 cut(s)	971
PciI	ACATGT	2 cut(s)	276, 359
PciSI	GCTCTTC	1 cut(s)	1052
PctI	GAATGC	2 cut(s)	129, 526
PdmI	GAANNNNTTC	1 cut(s)	923
PfeI	GAWTC	1 cut(s)	7
PflMI	CCANNNNNTGG	1 cut(s)	825
PkrI	GCNGC	5 cut(s)	219, 467, 894, 1209, 1233
PleI	GAGTC	1 cut(s)	991
PpsI	GAGTC	1 cut(s)	991
PscI	ACATGT	2 cut(s)	276, 359
PshBI	ATTAAT	1 cut(s)	268
Psp6I	CCWGG	1 cut(s)	90
PspFI	CCCAGC	1 cut(s)	1309
PspGI	CCWGG	1 cut(s)	90
PspN4I	GGNNCC	1 cut(s)	698
PspPI	GGNCC	2 cut(s)	29, 537
PstI	CTGCAG	1 cut(s)	1209
PsuI	RGATCY	2 cut(s)	1002, 1292
PvuII	CAGCTG	1 cut(s)	1210
RruI	TCGCGA	1 cut(s)	995
RsaI	GTAC	7 cut(s)	56, 192, 416, 534, 677, 1156, 1163
RsaNI	GTAC	7 cut(s)	55, 191, 415, 533, 676, 1155, 1162
RseI	CAYNNNNRTG	1 cut(s)	169
SapI	GCTCTTC	1 cut(s)	1052
SaqAI	TTAA	7 cut(s)	139, 145, 268, 401, 497, 835, 1108
SatI	GCNGC	5 cut(s)	218, 466, 893, 1208, 1232
Sau3AI	GATC	7 cut(s)	574, 617, 876, 987, 1002, 1077, 1292
Sau96I	GGNCC	2 cut(s)	29, 537
SchI	GAGTC	1 cut(s)	991
ScrFI	CCNGG	1 cut(s)	92
SduI	GDGCHC	2 cut(s)	90, 1151
SfaNI	GCATC	7 cut(s)	8, 80, 227, 623, 1030, 1144, 1270
SfcI	CTRYAG	2 cut(s)	1205, 1380
SmiMI	CAYNNNNRTG	1 cut(s)	169
SmlI	CTYRAG	3 cut(s)	48, 144, 703
SmoI	CTYRAG	3 cut(s)	48, 144, 703
SsiI	CCGC	1 cut(s)	540
SspI	AATATT	1 cut(s)	447
SspMI	CTAG	6 cut(s)	325, 880, 1087, 1228, 1258, 1303
StyD4I	CCNGG	1 cut(s)	90
TaaI	ACNGT	3 cut(s)	680, 1194, 1317
TaqI	TCGA	3 cut(s)	307, 927, 1080
TatI	WGTACW	1 cut(s)	54
TfiI	GAWTC	1 cut(s)	7
Tru1I	TTAA	7 cut(s)	139, 145, 268, 401, 497, 835, 1108
Tru9I	TTAA	7 cut(s)	139, 145, 268, 401, 497, 835, 1108
TscAI	CASTG	4 cut(s)	126, 176, 494, 953
TseFI	GTSAC	1 cut(s)	355
TseI	GCWGC	5 cut(s)	217, 465, 892, 1207, 1231
Tsp45I	GTSAC	1 cut(s)	355
TspDTI	ATGAA	4 cut(s)	578, 643, 960, 1353
TspRI	CASTG	4 cut(s)	126, 176, 494, 953
Van91I	CCANNNNNTGG	1 cut(s)	825
Vha464I	CTTAAG	1 cut(s)	144
VneI	GTGCAC	1 cut(s)	86
VspI	ATTAAT	1 cut(s)	268
XapI	RAATTY	4 cut(s)	797, 938, 967, 1103
XceI	RCATGY	2 cut(s)	280, 363
XmnI	GAANNNNTTC	1 cut(s)	923
XspI	CTAG	6 cut(s)	325, 880, 1087, 1228, 1258, 1303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.