Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0013658

Physical Location & Seq

Genomic Coordinates Forward (+)

38543431 .. 38544188

Gene Structure 758 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1167900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGAACAAAAGTCCACAGGGTTGCCAAGGAACGTGGATTGGGGGTATGATGTGTTGGTGAGCAATACCCTCTTGAAAATGTACATGGACTGTGGCTGTGTCGACGAAGCTTGGGCAGTTTTCAACCAAATGCCGGAGAAAGATGTCATTTCTTGCACAGAAATGATTCGTGCCAATGTGAAGAGGGGATGCTTCAATGAGGGTCTTAAGCTGTTTAGGCAGATGGTTGGAGACGGGGTGAAACCTGATCCGCTCTCGGTCTCTAGTGTTCTCCCAGCATGCGCAAGAATGTCTGCAGGTAAACATGGCAAAGAGACTCGTGGATTCTTGCTGCGACATGGTATTCGAATGAATCTCACCGTTCTGAATGCTCTTGTGGACATGTATGTCAAGTCGGGATTTATCAAATCAGCTGCAAAAGTTTTTGCCAGGTTGAAGTACAGAGATCTTGTTTCGTGGACAGTGATGATAACTGGGTACAGCTTACACGGACAAGGAAAGATCGGAGTAGATTTATTCTGCCAAATGGAGAAGGAAACGAGTACACAGATCGATGAAATCACCTATGCTGCTGTCCTTCATGCTTGCGTTGCAGCACGCATGGTCGAGGAAGGGAAGTTTTACTTCAACTGCATCAAGACACCTACAGTTGCACATTGTGCTTTCGGATCCCGTCATGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

228

Amino Acids

25.28

Weight (kDa)

8.82

Isoelectric Point (pI)

25.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	47 - 96	5e-07	PPR repeat family
PPR_2	PF13041	149 - 197	4.2e-07	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013658)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g22160 FvH4_4g22160
malus_domestica	MD00G1011100.v1.1 MD00G1167900.v1.1 MD02G1251400.v1.1 MD11G1025800.v1.1 MD12G1177100.v1.1
prunus_persica	Prupe.1G211300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0428391
rosa_laevigata	RLG00000007155
rosa_multiflora	Rmu_sc0004698.1_g000005
rosa_roxburghii	Rroxscaffold_5G00370060
rosa_rugosa	Rorug04G0225200
rosa_samantha	Rh4AG282300 Rh4BG287900 Rh4CG303700 Rh4DG285000
rosa_wichuraiana	Rw4G024500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	386
Acc16I	TGCGCA	1 cut(s)	283
Acc36I	ACCTGC	1 cut(s)	287
AccBSI	CCGCTC	1 cut(s)	253
AccI	GTMKAC	1 cut(s)	102
AciI	CCGC	1 cut(s)	251
AclWI	GGATC	3 cut(s)	242, 663, 676
AdeI	CACNNNGTG	1 cut(s)	659
AfaI	GTAC	4 cut(s)	83, 440, 479, 544
AfiI	CCNNNNNNNGG	1 cut(s)	133
AflII	CTTAAG	1 cut(s)	206
AflIII	ACRYGT	1 cut(s)	381
AgsI	TTSAA	5 cut(s)	76, 124, 196, 436, 628
AjnI	CCWGG	1 cut(s)	428
AluBI	AGCT	4 cut(s)	110, 211, 413, 483
AluI	AGCT	4 cut(s)	110, 211, 413, 483
Alw26I	GTCTC	3 cut(s)	225, 265, 308
AlwI	GGATC	3 cut(s)	242, 663, 676
ApeKI	GCWGC	4 cut(s)	331, 413, 569, 593
ArsI	GACNNNNNNTTYG	2 cut(s)	327, 359
Asp700I	GAANNNNTTC	1 cut(s)	165
AspLEI	GCGC	1 cut(s)	284
AsuHPI	GGTGA	4 cut(s)	70, 250, 349, 553
AsuII	TTCGAA	1 cut(s)	346
BamHI	GGATCC	1 cut(s)	668
BauI	CACGAG	1 cut(s)	318
BbvI	GCAGC	4 cut(s)	318, 400, 556, 605
BccI	CCATC	1 cut(s)	217
BciT130I	CCWGG	1 cut(s)	430
BcoDI	GTCTC	3 cut(s)	225, 265, 308
BfaI	CTAG	1 cut(s)	264
BfmI	CTRYAG	2 cut(s)	294, 645
BfrI	CTTAAG	1 cut(s)	206
BfuAI	ACCTGC	1 cut(s)	287
BglII	AGATCT	1 cut(s)	445
BisI	GCNGC	4 cut(s)	332, 414, 570, 594
BlsI	GCNGC	4 cut(s)	333, 415, 571, 595
Bme1390I	CCNGG	1 cut(s)	430
BmiI	GGNNCC	1 cut(s)	670
BmrFI	CCNGG	1 cut(s)	430
BmrI	ACTGGG	1 cut(s)	483
BmsI	GCATC	2 cut(s)	179, 642
BmuI	ACTGGG	1 cut(s)	483
Bpu14I	TTCGAA	1 cut(s)	346
Bsa29I	ATCGAT	1 cut(s)	552
BsaI	GGTCTC	1 cut(s)	265
BsaJI	CCNNGG	1 cut(s)	26
BsaXI	ACNNNNNCTCC	2 cut(s)	222, 252
Bsc4I	CCNNNNNNNGG	1 cut(s)	133
Bse1I	ACTGG	1 cut(s)	478
BseBI	CCWGG	1 cut(s)	430
BseCI	ATCGAT	1 cut(s)	552
BseDI	CCNNGG	1 cut(s)	26
BseGI	GGATG	1 cut(s)	194
BseLI	CCNNNNNNNGG	1 cut(s)	133
BseNI	ACTGG	1 cut(s)	478
BseXI	GCAGC	4 cut(s)	318, 400, 556, 605
BseYI	CCCAGC	1 cut(s)	274
BshVI	ATCGAT	1 cut(s)	552
BsiSI	CCGG	1 cut(s)	134
BslI	CCNNNNNNNGG	1 cut(s)	133
BsmAI	GTCTC	3 cut(s)	225, 265, 308
BsmBI	CGTCTC	1 cut(s)	225
BsmI	GAATGC	1 cut(s)	373
Bso31I	GGTCTC	1 cut(s)	265
Bsp119I	TTCGAA	1 cut(s)	346
Bsp1407I	TGTACA	1 cut(s)	81
Bsp143I	GATC	5 cut(s)	247, 445, 501, 549, 668
BspACI	CCGC	1 cut(s)	251
BspDI	ATCGAT	1 cut(s)	552
BspLI	GGNNCC	1 cut(s)	670
BspMAI	CTGCAG	1 cut(s)	298
BspMI	ACCTGC	1 cut(s)	287
BspPI	GGATC	3 cut(s)	242, 663, 676
BspT104I	TTCGAA	1 cut(s)	346
BspTI	CTTAAG	1 cut(s)	206
BspTNI	GGTCTC	1 cut(s)	265
BsrBI	CCGCTC	1 cut(s)	253
BsrGI	TGTACA	1 cut(s)	81
BsrI	ACTGG	1 cut(s)	478
BssECI	CCNNGG	1 cut(s)	26
BssMI	GATC	5 cut(s)	247, 445, 501, 549, 668
BssSI	CACGAG	1 cut(s)	318
BssT1I	CCWWGG	1 cut(s)	26
Bst2BI	CACGAG	1 cut(s)	318
Bst2UI	CCWGG	1 cut(s)	430
Bst4CI	ACNGT	4 cut(s)	92, 361, 463, 649
Bst6I	CTCTTC	1 cut(s)	176
BstAFI	CTTAAG	1 cut(s)	206
BstAPI	GCANNNNNTGC	1 cut(s)	659
BstAUI	TGTACA	1 cut(s)	81
BstBI	TTCGAA	1 cut(s)	346
BstC8I	GCNNGC	3 cut(s)	280, 586, 598
BstF5I	GGATG	1 cut(s)	194
BstHHI	GCGC	1 cut(s)	284
BstKTI	GATC	5 cut(s)	250, 448, 504, 552, 671
BstMAI	GTCTC	3 cut(s)	225, 265, 308
BstMBI	GATC	5 cut(s)	247, 445, 501, 549, 668
BstMWI	GCNNNNNNNGC	3 cut(s)	217, 590, 659
BstNI	CCWGG	1 cut(s)	430
BstNSI	RCATGY	2 cut(s)	282, 385
BstSCI	CCNGG	1 cut(s)	428
BstSFI	CTRYAG	2 cut(s)	294, 645
BstV1I	GCAGC	4 cut(s)	318, 400, 556, 605
BstX2I	RGATCY	2 cut(s)	445, 668
BstYI	RGATCY	2 cut(s)	445, 668
Bsu15I	ATCGAT	1 cut(s)	552
BsuTUI	ATCGAT	1 cut(s)	552
BtsCI	GGATG	1 cut(s)	194
BtsIMutI	CAGTG	1 cut(s)	468
BveI	ACCTGC	1 cut(s)	287
Cac8I	GCNNGC	3 cut(s)	280, 586, 598
CfoI	GCGC	1 cut(s)	284
ClaI	ATCGAT	1 cut(s)	552
Csp6I	GTAC	4 cut(s)	82, 439, 478, 543
CspCI	CAANNNNNGTGG	2 cut(s)	15, 50
CviAII	CATG	8 cut(s)	85, 279, 305, 338, 382, 581, 601, 677
CviJI	RGCY	5 cut(s)	96, 110, 211, 413, 483
CviKI_1	RGCY	5 cut(s)	96, 110, 211, 413, 483
CviQI	GTAC	4 cut(s)	82, 439, 478, 543
DpnI	GATC	5 cut(s)	249, 447, 503, 551, 670
DpnII	GATC	5 cut(s)	247, 445, 501, 549, 668
DraIII	CACNNNGTG	1 cut(s)	659
DrdI	GACNNNNNNGTC	1 cut(s)	386
DseDI	GACNNNNNNGTC	1 cut(s)	386
Eam1104I	CTCTTC	1 cut(s)	176
EarI	CTCTTC	1 cut(s)	176
Eco130I	CCWWGG	1 cut(s)	26
Eco31I	GGTCTC	1 cut(s)	265
EcoRII	CCWGG	1 cut(s)	428
EcoT14I	CCWWGG	1 cut(s)	26
ErhI	CCWWGG	1 cut(s)	26
Esp3I	CGTCTC	1 cut(s)	225
FaeI	CATG	8 cut(s)	88, 282, 308, 341, 385, 584, 604, 680
FalI	AAGNNNNNCTT	2 cut(s)	608, 640
FatI	CATG	8 cut(s)	84, 278, 304, 337, 381, 580, 600, 676
FblI	GTMKAC	1 cut(s)	102
Fnu4HI	GCNGC	4 cut(s)	332, 414, 570, 594
FokI	GGATG	1 cut(s)	201
Fsp4HI	GCNGC	4 cut(s)	332, 414, 570, 594
FspBI	CTAG	1 cut(s)	264
FspI	TGCGCA	1 cut(s)	283
GlaI	GCGC	1 cut(s)	283
GluI	GCNGC	4 cut(s)	332, 414, 570, 594
GsaI	CCCAGC	1 cut(s)	278
HapII	CCGG	1 cut(s)	134
HhaI	GCGC	1 cut(s)	284
Hin1II	CATG	8 cut(s)	88, 282, 308, 341, 385, 584, 604, 680
Hin6I	GCGC	1 cut(s)	282
HinP1I	GCGC	1 cut(s)	282
HincII	GTYRAC	1 cut(s)	103
HindII	GTYRAC	1 cut(s)	103
HindIII	AAGCTT	1 cut(s)	108
HinfI	GANTC	4 cut(s)	166, 316, 324, 352
HpaII	CCGG	1 cut(s)	134
HphI	GGTGA	4 cut(s)	70, 250, 349, 553
Hpy166II	GTNNAC	6 cut(s)	15, 103, 302, 379, 459, 545
Hpy188I	TCNGA	3 cut(s)	366, 506, 668
Hpy188III	TCNNGA	3 cut(s)	73, 396, 637
Hpy8I	GTNNAC	6 cut(s)	15, 103, 302, 379, 459, 545
Hpy99I	CGWCG	1 cut(s)	107
HpyAV	CCTTC	3 cut(s)	526, 587, 605
HpyCH4III	ACNGT	4 cut(s)	92, 361, 463, 649
HpyCH4IV	ACGT	1 cut(s)	33
HpyCH4V	TGCA	6 cut(s)	156, 296, 416, 593, 633, 653
HpyF10VI	GCNNNNNNNGC	3 cut(s)	217, 590, 659
HpySE526I	ACGT	1 cut(s)	33
Hsp92II	CATG	8 cut(s)	88, 282, 308, 341, 385, 584, 604, 680
HspAI	GCGC	1 cut(s)	282
Kzo9I	GATC	5 cut(s)	247, 445, 501, 549, 668
LpnPI	CCDG	8 cut(s)	3, 147, 258, 282, 288, 415, 442, 459
Lsp1109I	GCAGC	4 cut(s)	318, 400, 556, 605
LweI	GCATC	2 cut(s)	179, 642
MaeI	CTAG	1 cut(s)	264
MaeII	ACGT	1 cut(s)	33
MalI	GATC	5 cut(s)	249, 447, 503, 551, 670
MbiI	CCGCTC	1 cut(s)	253
MboI	GATC	5 cut(s)	247, 445, 501, 549, 668
MboII	GAAGA	1 cut(s)	193
MflI	RGATCY	2 cut(s)	445, 668
MlyI	GAGTC	1 cut(s)	310
MmeI	TCCRAC	1 cut(s)	208
MnlI	CCTC	4 cut(s)	80, 177, 193, 601
MroXI	GAANNNNTTC	1 cut(s)	165
MseI	TTAA	1 cut(s)	207
MslI	CAYNNNNRTG	1 cut(s)	161
MspA1I	CMGCKG	1 cut(s)	413
MspCI	CTTAAG	1 cut(s)	206
MspI	CCGG	1 cut(s)	134
MspR9I	CCNGG	1 cut(s)	430
Mva1269I	GAATGC	1 cut(s)	373
MvaI	CCWGG	1 cut(s)	430
MwoI	GCNNNNNNNGC	3 cut(s)	217, 590, 659
NdeII	GATC	5 cut(s)	247, 445, 501, 549, 668
NlaIII	CATG	8 cut(s)	88, 282, 308, 341, 385, 584, 604, 680
NlaIV	GGNNCC	1 cut(s)	670
NsbI	TGCGCA	1 cut(s)	283
NspI	RCATGY	2 cut(s)	282, 385
NspV	TTCGAA	1 cut(s)	346
PaeI	GCATGC	1 cut(s)	282
PciI	ACATGT	1 cut(s)	381
PctI	GAATGC	1 cut(s)	373
PdmI	GAANNNNTTC	1 cut(s)	165
PfeI	GAWTC	3 cut(s)	166, 324, 352
PkrI	GCNGC	4 cut(s)	333, 415, 571, 595
PleI	GAGTC	1 cut(s)	310
PpsI	GAGTC	1 cut(s)	310
PscI	ACATGT	1 cut(s)	381
Psp6I	CCWGG	1 cut(s)	428
PspFI	CCCAGC	1 cut(s)	274
PspGI	CCWGG	1 cut(s)	428
PspN4I	GGNNCC	1 cut(s)	670
PstI	CTGCAG	1 cut(s)	298
PsuI	RGATCY	2 cut(s)	445, 668
PvuII	CAGCTG	1 cut(s)	413
RsaI	GTAC	4 cut(s)	83, 440, 479, 544
RsaNI	GTAC	4 cut(s)	82, 439, 478, 543
RseI	CAYNNNNRTG	1 cut(s)	161
SalI	GTCGAC	1 cut(s)	101
SaqAI	TTAA	1 cut(s)	207
SatI	GCNGC	4 cut(s)	332, 414, 570, 594
Sau3AI	GATC	5 cut(s)	247, 445, 501, 549, 668
SchI	GAGTC	1 cut(s)	310
ScrFI	CCNGG	1 cut(s)	430
SfaNI	GCATC	2 cut(s)	179, 642
SfcI	CTRYAG	2 cut(s)	294, 645
SfuI	TTCGAA	1 cut(s)	346
SmiMI	CAYNNNNRTG	1 cut(s)	161
SmlI	CTYRAG	1 cut(s)	206
SmoI	CTYRAG	1 cut(s)	206
SphI	GCATGC	1 cut(s)	282
SsiI	CCGC	1 cut(s)	251
SspMI	CTAG	1 cut(s)	264
StyD4I	CCNGG	1 cut(s)	428
StyI	CCWWGG	1 cut(s)	26
TaaI	ACNGT	4 cut(s)	92, 361, 463, 649
TaiI	ACGT	1 cut(s)	36
TaqI	TCGA	4 cut(s)	102, 346, 552, 606
TaqII	GACCGA	1 cut(s)	247
TatI	WGTACW	3 cut(s)	81, 438, 542
TfiI	GAWTC	3 cut(s)	166, 324, 352
Tru1I	TTAA	1 cut(s)	207
Tru9I	TTAA	1 cut(s)	207
TscAI	CASTG	1 cut(s)	468
TseI	GCWGC	4 cut(s)	331, 413, 569, 593
TspDTI	ATGAA	3 cut(s)	365, 569, 570
TspGWI	ACGGA	1 cut(s)	504
TspRI	CASTG	1 cut(s)	468
Vha464I	CTTAAG	1 cut(s)	206
XceI	RCATGY	2 cut(s)	282, 385
XmiI	GTMKAC	1 cut(s)	102
XmnI	GAANNNNTTC	1 cut(s)	165
XspI	CTAG	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.