Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0011521

Physical Location & Seq

Genomic Coordinates Reverse (-)

43425384 .. 43426058

Gene Structure 675 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1184100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGGCTCTAGTTAATAGCTTCATGCCAAAAACCATGCTCCAAATGCCCCTCGATTCCAAGCCCTACAGCCTGCTGATTAATAAGAGTGTGATAATAAGATGTGCTGCAGCGTCTAGACGACAGATCAGTAGAGGGAAACCTCCGCAAATCAACCGGGTAAGCAGAAGAAGTAACAGGAGCTTGAGAAGTGATCAGGTCAGCCTCAGCAACAGTGTGAGTGGAGAAGATGGGAAAACAAATGGAGGAAATGTTGTTGCTGATGAAGTTAACAATACAACCAACACTGCTGATGCCACTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

101

Amino Acids

10.85

Weight (kDa)

10.27

Isoelectric Point (pI)

54.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011521)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g14910 FvH4_2g14910 FvH4_2g14910
malus_domestica	MD00G1184100.v1.1
prunus_persica	Prupe.4G159800_v2.0.a1
pyrus_communis	pycom11g23440
rosa_chinensis	RchiOBHm_Chr2g0162471 RchiOBHm_Chr5g0030101
rosa_multiflora	Rmu_sc0042269.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049890 Rroxscaffold_1G00049930
rosa_rugosa	Rorug05G0117100 Rorug05G0117800
rosa_samantha	Rh5AG210100 Rh5BG209100 Rh5CG232900 Rh5DG213400 Rh6AG219500
rosa_wichuraiana	Rw5G019150 Rw5G019180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	143
AluBI	AGCT	2 cut(s)	18, 180
AluI	AGCT	2 cut(s)	18, 180
ApeKI	GCWGC	2 cut(s)	104, 107
AseI	ATTAAT	1 cut(s)	78
AsuC2I	CCSGG	1 cut(s)	155
BbvCI	CCTCAGC	1 cut(s)	203
BbvI	GCAGC	2 cut(s)	91, 119
BccI	CCATC	1 cut(s)	221
BclI	TGATCA	1 cut(s)	190
BcnI	CCSGG	1 cut(s)	155
BfaI	CTAG	2 cut(s)	8, 114
BfmI	CTRYAG	2 cut(s)	64, 105
BisI	GCNGC	2 cut(s)	105, 108
BlsI	GCNGC	2 cut(s)	106, 109
Bme1390I	CCNGG	1 cut(s)	155
BmrFI	CCNGG	1 cut(s)	155
BmsI	GCATC	1 cut(s)	280
Bpu10I	CCTNAGC	1 cut(s)	203
BpuEI	CTTGAG	1 cut(s)	202
BpuMI	CCSGG	1 cut(s)	155
BsaXI	ACNNNNNCTCC	2 cut(s)	234, 264
BseMII	CTCAG	1 cut(s)	217
BseXI	GCAGC	2 cut(s)	91, 119
BsiSI	CCGG	1 cut(s)	154
Bsp143I	GATC	2 cut(s)	123, 190
BspACI	CCGC	1 cut(s)	143
BspCNI	CTCAG	1 cut(s)	216
BspMAI	CTGCAG	1 cut(s)	109
BssMI	GATC	2 cut(s)	123, 190
Bst4CI	ACNGT	1 cut(s)	212
BstC8I	GCNNGC	1 cut(s)	71
BstDEI	CTNAG	1 cut(s)	203
BstKTI	GATC	2 cut(s)	126, 193
BstMBI	GATC	2 cut(s)	123, 190
BstMWI	GCNNNNNNNGC	1 cut(s)	43
BstSCI	CCNGG	1 cut(s)	153
BstSFI	CTRYAG	2 cut(s)	64, 105
BstV1I	GCAGC	2 cut(s)	91, 119
BtsI	GCAGTG	1 cut(s)	282
BtsIMutI	CAGTG	3 cut(s)	217, 282, 294
Cac8I	GCNNGC	1 cut(s)	71
CseI	GACGC	1 cut(s)	99
CviAII	CATG	2 cut(s)	22, 34
CviJI	RGCY	6 cut(s)	5, 18, 61, 69, 180, 201
CviKI_1	RGCY	6 cut(s)	5, 18, 61, 69, 180, 201
DdeI	CTNAG	1 cut(s)	203
DpnI	GATC	2 cut(s)	125, 192
DpnII	GATC	2 cut(s)	123, 190
FaeI	CATG	2 cut(s)	25, 37
FaiI	YATR	2 cut(s)	23, 35
FatI	CATG	2 cut(s)	21, 33
FbaI	TGATCA	1 cut(s)	190
Fnu4HI	GCNGC	2 cut(s)	105, 108
Fsp4HI	GCNGC	2 cut(s)	105, 108
FspBI	CTAG	2 cut(s)	8, 114
GluI	GCNGC	2 cut(s)	105, 108
HapII	CCGG	1 cut(s)	154
HgaI	GACGC	1 cut(s)	99
Hin1II	CATG	2 cut(s)	25, 37
HincII	GTYRAC	1 cut(s)	268
HindII	GTYRAC	1 cut(s)	268
HinfI	GANTC	1 cut(s)	53
HpaI	GTTAAC	1 cut(s)	268
HpaII	CCGG	1 cut(s)	154
Hpy166II	GTNNAC	1 cut(s)	268
Hpy188III	TCNNGA	1 cut(s)	114
Hpy8I	GTNNAC	1 cut(s)	268
HpyCH4III	ACNGT	1 cut(s)	212
HpyCH4V	TGCA	1 cut(s)	107
HpyF10VI	GCNNNNNNNGC	1 cut(s)	43
HpyF3I	CTNAG	1 cut(s)	203
Hsp92II	CATG	2 cut(s)	25, 37
Ksp22I	TGATCA	1 cut(s)	190
KspAI	GTTAAC	1 cut(s)	268
Kzo9I	GATC	2 cut(s)	123, 190
LmnI	GCTCC	2 cut(s)	42, 177
LpnPI	CCDG	4 cut(s)	83, 160, 167, 179
Lsp1109I	GCAGC	2 cut(s)	91, 119
LweI	GCATC	1 cut(s)	280
MaeI	CTAG	2 cut(s)	8, 114
MaeIII	GTNAC	1 cut(s)	170
MalI	GATC	2 cut(s)	125, 192
MboI	GATC	2 cut(s)	123, 190
MboII	GAAGA	2 cut(s)	177, 236
MnlI	CCTC	5 cut(s)	59, 125, 150, 212, 236
MseI	TTAA	4 cut(s)	12, 78, 267, 301
MspI	CCGG	1 cut(s)	154
MspR9I	CCNGG	1 cut(s)	155
MwoI	GCNNNNNNNGC	1 cut(s)	43
NciI	CCSGG	1 cut(s)	155
NdeII	GATC	2 cut(s)	123, 190
NlaIII	CATG	2 cut(s)	25, 37
PfeI	GAWTC	1 cut(s)	53
PkrI	GCNGC	2 cut(s)	106, 109
PshBI	ATTAAT	1 cut(s)	78
PstI	CTGCAG	1 cut(s)	109
SaqAI	TTAA	4 cut(s)	12, 78, 267, 301
SatI	GCNGC	2 cut(s)	105, 108
Sau3AI	GATC	2 cut(s)	123, 190
ScrFI	CCNGG	1 cut(s)	155
SetI	ASST	4 cut(s)	20, 142, 182, 198
SfaNI	GCATC	1 cut(s)	280
SfcI	CTRYAG	2 cut(s)	64, 105
SmlI	CTYRAG	1 cut(s)	181
SmoI	CTYRAG	1 cut(s)	181
SsiI	CCGC	1 cut(s)	143
SspMI	CTAG	2 cut(s)	8, 114
StyD4I	CCNGG	1 cut(s)	153
TaaI	ACNGT	1 cut(s)	212
TaqI	TCGA	1 cut(s)	51
TfiI	GAWTC	1 cut(s)	53
Tru1I	TTAA	4 cut(s)	12, 78, 267, 301
Tru9I	TTAA	4 cut(s)	12, 78, 267, 301
TscAI	CASTG	3 cut(s)	217, 289, 301
TseI	GCWGC	2 cut(s)	104, 107
TspDTI	ATGAA	2 cut(s)	10, 276
TspRI	CASTG	3 cut(s)	217, 289, 301
VspI	ATTAAT	1 cut(s)	78
XbaI	TCTAGA	1 cut(s)	113
XspI	CTAG	2 cut(s)	8, 114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.