Rh6AG219500

Belongs to the class-I aminoacyl-tRNA synthetase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
Physical Location & Seq
Reverse (-)
39569292 .. 39574155
4864 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG219500.1

Sequence Viewer

Length: 1311 bp
ATGGCGACCCTAGTCGCAATGCCCAGAATGAGACTCAAATTCACATCCTTCCCTCCATTTCTGGGCCAATCCTACAGGCCCAGAAGACTCTCACTCTTCAATGGCAGAAGGGCCTTTTCATTCTCTGCTTCTGCAACCCCAGACCAAGTACGTGTCCGCTTTGCTCCTTCTCCTACTGGGAATCTCCACGTTGGTGGAGCCAGAACTGCCCTCTTCAATTACCTCTTTGCCAGGTCCAATGGAGGCAAGTTTGTTTTGAGAATTGAAGACACTGATTTGGAGAGGTCTACTAAGGAATCTGAGGAGGCTGTGTTGCGGGATCTCTCTTGGCTTGGTCTTGATTGGGATGAAGGACCCGGTGTGGATGGAGATTATGGGCCATATCGGCAATCGGAAAGAAATTCTTTGTACAAGCAGTATGCTGAGAAGCTTTTAGAGTCTGGTTATGTCTATCGCTGCTTTTGCTCCAGTGAGGAACTAGAAAAAATGAAGGAGATTGCAAAGCTGAAGCAACTGCCTCCAGTATACTCAGGAAAGTGGGCCAGTGCAACTAATGAAGAAGTACAAGTAGAGCTGGAAAAAGGAACTCCTTACACATATAGGTTTCGTGTTCCAAAGGAAGGAAGTCTTAAGATCAATGATCTCATTCGAGGGCAGGTCAGTTGGAACTTGGACACTCTTGGAGATTTTGTAATTATGAGAAGCAATGGTCAACCGGTGTACAATTTTTGTGTCACAGTTGATGATGCTACCATGGCTATCTCACATGTTATTAGAGCAGAGGAGCATTTACCAAATACTCTAAGGCAAGCGTTAATATATAAGGCACTAGGATTTCCAATGCCTTCCTTTGCACATGTATCCTTAATTCTTGCACCTGATCGAAGTAAGTTATCAAAAAGGCATGGAGCAACTTCAGTGGGCCAGTTTAGGGAGATGGGCTATCTACCACAGGCAATGGTGAACTACTTGGCACTGTTAGGTTGGGGTGATGGCACTGAAAATGAATTTTTCACCTTGGAGCAGCTAGTTGAAAAATTTTCAATTGGTCGTGTCAACAAAAGTGGTGCCATTTTTGACAATACCAAGTTAAGGTGGATGAATGGTCAACACTTACGAGCACTTCCATCAGAGGAGTTGAAAAAACGTATTGGTGAGCAATGGAAAAGTAGCGGTATCCTTACAGAATCAGAGGGTTCATTTGTAGAAGTAAGACTCATCTCTTCATCACTTCCTTTTGTACGTTATTTAGTACATAACTTCCAGAAACATTGTCCATGTTCATTGCATTTAATAAGACAAATCATATAA

Protein Analysis

436

Amino Acids

49.53

Weight (kDa)

9.17

Isoelectric Point (pI)

42.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA-synt_1c PF00749 49 - 366 3.3e-104 tRNA synthetases class I (E and Q), catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 646
AccB1I GGYRCC 1 cut(s) 1067
AccI GTMKAC 2 cut(s) 287, 525
AciI CCGC 3 cut(s) 157, 316, 1173
AclWI GGATC 1 cut(s) 327
AcsI RAATTY 4 cut(s) 38, 400, 1007, 1037
AcuI CTGAAG 2 cut(s) 527, 900
AfaI GTAC 6 cut(s) 150, 410, 564, 722, 1242, 1254
AfiI CCNNNNNNNGG 4 cut(s) 62, 620, 931, 1092
AflII CTTAAG 1 cut(s) 629
AflIII ACRYGT 3 cut(s) 151, 766, 856
AgeI ACCGGT 1 cut(s) 715
AgsI TTSAA 6 cut(s) 100, 217, 266, 1034, 1044, 1141
AjnI CCWGG 1 cut(s) 230
AleI CACNNNNGTG 1 cut(s) 192
AluBI AGCT 4 cut(s) 430, 505, 574, 1027
AluI AGCT 4 cut(s) 430, 505, 574, 1027
Alw21I GWGCWC 1 cut(s) 1123
Alw26I GTCTC 1 cut(s) 25
AlwI GGATC 1 cut(s) 327
AoxI GGCC 6 cut(s) 64, 77, 111, 377, 540, 922
ApeKI GCWGC 2 cut(s) 456, 1024
ApoI RAATTY 4 cut(s) 38, 400, 1007, 1037
AsiGI ACCGGT 1 cut(s) 715
AspS9I GGNCC 8 cut(s) 64, 78, 111, 234, 353, 377, 540, 922
AsuC2I CCSGG 1 cut(s) 357
AsuHPI GGTGA 4 cut(s) 973, 1001, 1006, 1166
AvaII GGWCC 2 cut(s) 234, 353
BanI GGYRCC 1 cut(s) 1067
BbsI GAAGAC 2 cut(s) 91, 273
Bbv12I GWGCWC 1 cut(s) 1123
BbvI GCAGC 2 cut(s) 443, 1036
BccI CCATC 4 cut(s) 359, 931, 986, 1135
BciT130I CCWGG 1 cut(s) 232
BciVI GTATCC 2 cut(s) 871, 1187
BcnI CCSGG 1 cut(s) 357
BcoDI GTCTC 1 cut(s) 25
BfaI CTAG 4 cut(s) 11, 479, 830, 1028
BfmI CTRYAG 1 cut(s) 73
BfrI CTTAAG 1 cut(s) 629
BfuAI ACCTGC 1 cut(s) 646
BfuI GTATCC 2 cut(s) 871, 1187
BglI GCCNNNNNGGC 1 cut(s) 385
BisI GCNGC 2 cut(s) 457, 1025
BlsI GCNGC 2 cut(s) 458, 1026
Bme1390I CCNGG 2 cut(s) 232, 357
Bme18I GGWCC 2 cut(s) 234, 353
BmgT120I GGNCC 8 cut(s) 64, 78, 111, 234, 353, 377, 540, 922
BmiI GGNNCC 3 cut(s) 199, 355, 1069
BmrFI CCNGG 2 cut(s) 232, 357
BmrI ACTGGG 1 cut(s) 186
BmsI GCATC 1 cut(s) 736
BmuI ACTGGG 1 cut(s) 186
BoxI GACNNNNGTC 1 cut(s) 11
BpiI GAAGAC 2 cut(s) 91, 273
BpmI CTGGAG 2 cut(s) 451, 504
BpuMI CCSGG 1 cut(s) 357
BsaAI YACGTR 1 cut(s) 152
BsaJI CCNNGG 2 cut(s) 753, 1017
BsaWI WCCGGW 1 cut(s) 715
BsaXI ACNNNNNCTCC 4 cut(s) 296, 326, 675, 705
Bsc4I CCNNNNNNNGG 4 cut(s) 62, 620, 931, 1092
Bse118I RCCGGY 1 cut(s) 715
Bse1I ACTGG 5 cut(s) 181, 468, 521, 543, 925
Bse3DI GCAATG 5 cut(s) 24, 712, 963, 1166, 1283
BseBI CCWGG 1 cut(s) 232
BseDI CCNNGG 2 cut(s) 753, 1017
BseGI GGATG 4 cut(s) 44, 352, 370, 1104
BseLI CCNNNNNNNGG 4 cut(s) 62, 620, 931, 1092
BseMI GCAATG 5 cut(s) 24, 712, 963, 1166, 1283
BseMII CTCAG 3 cut(s) 291, 414, 543
BseNI ACTGG 5 cut(s) 181, 468, 521, 543, 925
BseRI GAGGAG 3 cut(s) 317, 797, 1148
BseXI GCAGC 2 cut(s) 443, 1036
BshFI GGCC 6 cut(s) 66, 79, 113, 379, 542, 924
BshNI GGYRCC 1 cut(s) 1067
BshTI ACCGGT 1 cut(s) 715
BsiHKAI GWGCWC 1 cut(s) 1123
BsiSI CCGG 2 cut(s) 357, 716
BslI CCNNNNNNNGG 4 cut(s) 62, 620, 931, 1092
BsmAI GTCTC 1 cut(s) 25
BsnI GGCC 6 cut(s) 66, 79, 113, 379, 542, 924
Bsp1286I GDGCHC 1 cut(s) 1123
Bsp1407I TGTACA 2 cut(s) 408, 720
Bsp143I GATC 4 cut(s) 319, 633, 640, 880
Bsp19I CCATGG 1 cut(s) 753
BspACI CCGC 3 cut(s) 157, 316, 1173
BspANI GGCC 6 cut(s) 66, 79, 113, 379, 542, 924
BspCNI CTCAG 3 cut(s) 292, 415, 542
BspLI GGNNCC 3 cut(s) 199, 355, 1069
BspMI ACCTGC 1 cut(s) 646
BspPI GGATC 1 cut(s) 327
BspT107I GGYRCC 1 cut(s) 1067
BspTI CTTAAG 1 cut(s) 629
BsrDI GCAATG 5 cut(s) 24, 712, 963, 1166, 1283
BsrFI RCCGGY 1 cut(s) 715
BsrGI TGTACA 2 cut(s) 408, 720
BsrI ACTGG 5 cut(s) 181, 468, 521, 543, 925
BssAI RCCGGY 1 cut(s) 715
BssECI CCNNGG 2 cut(s) 753, 1017
BssMI GATC 4 cut(s) 319, 633, 640, 880
BssNAI GTATAC 1 cut(s) 526
BssT1I CCWWGG 2 cut(s) 753, 1017
Bst1107I GTATAC 1 cut(s) 526
Bst2UI CCWGG 1 cut(s) 232
Bst4CI ACNGT 2 cut(s) 739, 978
Bst6I CTCTTC 3 cut(s) 101, 218, 1228
BstAFI CTTAAG 1 cut(s) 629
BstAUI TGTACA 2 cut(s) 408, 720
BstBAI YACGTR 1 cut(s) 152
BstC8I GCNNGC 1 cut(s) 810
BstDEI CTNAG 5 cut(s) 291, 300, 423, 529, 803
BstDSI CCRYGG 1 cut(s) 753
BstF5I GGATG 4 cut(s) 44, 352, 370, 1104
BstKTI GATC 4 cut(s) 322, 636, 643, 883
BstMAI GTCTC 1 cut(s) 25
BstMBI GATC 4 cut(s) 319, 633, 640, 880
BstMWI GCNNNNNNNGC 4 cut(s) 206, 385, 462, 755
BstNI CCWGG 1 cut(s) 232
BstNSI RCATGY 2 cut(s) 770, 860
BstPAI GACNNNNGTC 1 cut(s) 11
BstSCI CCNGG 2 cut(s) 230, 355
BstSFI CTRYAG 1 cut(s) 73
BstV1I GCAGC 2 cut(s) 443, 1036
BstV2I GAAGAC 2 cut(s) 91, 273
BstX2I RGATCY 1 cut(s) 319
BstXI CCANNNNNNTGG 1 cut(s) 194
BstYI RGATCY 1 cut(s) 319
BstZ17I GTATAC 1 cut(s) 526
BsuI GTATCC 2 cut(s) 871, 1187
BsuRI GGCC 6 cut(s) 66, 79, 113, 379, 542, 924
BtgI CCRYGG 1 cut(s) 753
BtsCI GGATG 4 cut(s) 44, 352, 370, 1104
BtsIMutI CAGTG 6 cut(s) 270, 475, 550, 924, 974, 996
BveI ACCTGC 1 cut(s) 646
Cac8I GCNNGC 1 cut(s) 810
Cfr10I RCCGGY 1 cut(s) 715
Cfr13I GGNCC 8 cut(s) 64, 78, 111, 234, 353, 377, 540, 922
Csp6I GTAC 6 cut(s) 149, 409, 563, 721, 1241, 1253
CspAI ACCGGT 1 cut(s) 715
CspCI CAANNNNNGTGG 4 cut(s) 900, 935, 1045, 1080
CviAII CATG 5 cut(s) 754, 767, 857, 905, 1278
CviQI GTAC 6 cut(s) 149, 409, 563, 721, 1241, 1253
DdeI CTNAG 5 cut(s) 291, 300, 423, 529, 803
DpnI GATC 4 cut(s) 321, 635, 642, 882
DpnII GATC 4 cut(s) 319, 633, 640, 880
Eam1104I CTCTTC 3 cut(s) 101, 218, 1228
EarI CTCTTC 3 cut(s) 101, 218, 1228
Eco130I CCWWGG 2 cut(s) 753, 1017
Eco47I GGWCC 2 cut(s) 234, 353
Eco57I CTGAAG 2 cut(s) 527, 900
EcoO109I RGGNCCY 2 cut(s) 111, 353
EcoRII CCWGG 1 cut(s) 230
EcoT14I CCWWGG 2 cut(s) 753, 1017
ErhI CCWWGG 2 cut(s) 753, 1017
FaeI CATG 5 cut(s) 757, 770, 860, 908, 1281
FalI AAGNNNNNCTT 4 cut(s) 388, 420, 612, 644
FatI CATG 5 cut(s) 753, 766, 856, 904, 1277
FauI CCCGC 1 cut(s) 309
FblI GTMKAC 2 cut(s) 287, 525
Fnu4HI GCNGC 2 cut(s) 457, 1025
FokI GGATG 4 cut(s) 31, 359, 377, 1111
Fsp4HI GCNGC 2 cut(s) 457, 1025
FspBI CTAG 4 cut(s) 11, 479, 830, 1028
GluI GCNGC 2 cut(s) 457, 1025
GsuI CTGGAG 2 cut(s) 451, 504
HaeIII GGCC 6 cut(s) 66, 79, 113, 379, 542, 924
HapII CCGG 2 cut(s) 357, 716
Hin1II CATG 5 cut(s) 757, 770, 860, 908, 1281
HincII GTYRAC 3 cut(s) 713, 1057, 1109
HindII GTYRAC 3 cut(s) 713, 1057, 1109
HindIII AAGCTT 1 cut(s) 428
HinfI GANTC 7 cut(s) 33, 87, 181, 296, 437, 1187, 1215
HpaII CCGG 2 cut(s) 357, 716
HphI GGTGA 4 cut(s) 973, 1001, 1006, 1166
Hpy166II GTNNAC 7 cut(s) 288, 526, 713, 721, 964, 1057, 1109
Hpy188I TCNGA 4 cut(s) 301, 394, 1132, 1192
Hpy188III TCNNGA 3 cut(s) 338, 531, 1264
Hpy8I GTNNAC 7 cut(s) 288, 526, 713, 721, 964, 1057, 1109
HpyAV CCTTC 7 cut(s) 58, 102, 177, 344, 484, 614, 855
HpyCH4III ACNGT 2 cut(s) 739, 978
HpyCH4IV ACGT 4 cut(s) 151, 189, 1147, 1243
HpyCH4V TGCA 6 cut(s) 134, 500, 548, 854, 875, 1288
HpyF10VI GCNNNNNNNGC 4 cut(s) 206, 385, 462, 755
HpyF3I CTNAG 5 cut(s) 291, 300, 423, 529, 803
HpySE526I ACGT 4 cut(s) 151, 189, 1147, 1243
Hsp92II CATG 5 cut(s) 757, 770, 860, 908, 1281
Kzo9I GATC 4 cut(s) 319, 633, 640, 880
LmnI GCTCC 6 cut(s) 169, 197, 470, 784, 908, 1021
Lsp1109I GCAGC 2 cut(s) 443, 1036
LweI GCATC 1 cut(s) 736
MaeI CTAG 4 cut(s) 11, 479, 830, 1028
MaeII ACGT 4 cut(s) 151, 189, 1147, 1243
MaeIII GTNAC 1 cut(s) 733
MalI GATC 4 cut(s) 321, 635, 642, 882
MboI GATC 4 cut(s) 319, 633, 640, 880
MboII GAAGA 6 cut(s) 88, 96, 205, 278, 569, 1215
MfeI CAATTG 1 cut(s) 1044
MflI RGATCY 1 cut(s) 319
MhlI GDGCHC 1 cut(s) 1123
MlyI GAGTC 4 cut(s) 27, 81, 446, 1209
MmeI TCCRAC 1 cut(s) 644
MseI TTAA 5 cut(s) 630, 815, 866, 1091, 1292
MslI CAYNNNNRTG 1 cut(s) 192
MspCI CTTAAG 1 cut(s) 629
MspI CCGG 2 cut(s) 357, 716
MspR9I CCNGG 2 cut(s) 232, 357
MunI CAATTG 1 cut(s) 1044
MvaI CCWGG 1 cut(s) 232
MwoI GCNNNNNNNGC 4 cut(s) 206, 385, 462, 755
NciI CCSGG 1 cut(s) 357
NcoI CCATGG 1 cut(s) 753
NdeII GATC 4 cut(s) 319, 633, 640, 880
NlaIII CATG 5 cut(s) 757, 770, 860, 908, 1281
NlaIV GGNNCC 3 cut(s) 199, 355, 1069
NmuCI GTSAC 1 cut(s) 733
NspI RCATGY 2 cut(s) 770, 860
OliI CACNNNNGTG 1 cut(s) 192
PciI ACATGT 2 cut(s) 766, 856
PfeI GAWTC 3 cut(s) 181, 296, 1187
PinAI ACCGGT 1 cut(s) 715
PkrI GCNGC 2 cut(s) 458, 1026
PleI GAGTC 4 cut(s) 27, 81, 445, 1209
PpsI GAGTC 4 cut(s) 27, 81, 445, 1209
Ppu21I YACGTR 1 cut(s) 152
PpuMI RGGWCCY 1 cut(s) 353
PscI ACATGT 2 cut(s) 766, 856
PshAI GACNNNNGTC 1 cut(s) 11
Psp5II RGGWCCY 1 cut(s) 353
Psp6I CCWGG 1 cut(s) 230
PspGI CCWGG 1 cut(s) 230
PspN4I GGNNCC 3 cut(s) 199, 355, 1069
PspPI GGNCC 8 cut(s) 64, 78, 111, 234, 353, 377, 540, 922
PspPPI RGGWCCY 1 cut(s) 353
PsuI RGATCY 1 cut(s) 319
RsaI GTAC 6 cut(s) 150, 410, 564, 722, 1242, 1254
RsaNI GTAC 6 cut(s) 149, 409, 563, 721, 1241, 1253
RseI CAYNNNNRTG 1 cut(s) 192
SaqAI TTAA 5 cut(s) 630, 815, 866, 1091, 1292
SatI GCNGC 2 cut(s) 457, 1025
Sau3AI GATC 4 cut(s) 319, 633, 640, 880
Sau96I GGNCC 8 cut(s) 64, 78, 111, 234, 353, 377, 540, 922
SchI GAGTC 4 cut(s) 27, 81, 446, 1209
ScrFI CCNGG 2 cut(s) 232, 357
SduI GDGCHC 1 cut(s) 1123
SfaNI GCATC 1 cut(s) 736
SfcI CTRYAG 1 cut(s) 73
SinI GGWCC 2 cut(s) 234, 353
SmiMI CAYNNNNRTG 1 cut(s) 192
SmlI CTYRAG 1 cut(s) 629
SmoI CTYRAG 1 cut(s) 629
SsiI CCGC 3 cut(s) 157, 316, 1173
SspMI CTAG 4 cut(s) 11, 479, 830, 1028
StyD4I CCNGG 2 cut(s) 230, 355
StyI CCWWGG 2 cut(s) 753, 1017
TaaI ACNGT 2 cut(s) 739, 978
TaiI ACGT 4 cut(s) 154, 192, 1150, 1246
TaqI TCGA 2 cut(s) 649, 883
TatI WGTACW 4 cut(s) 408, 562, 720, 1252
TfiI GAWTC 3 cut(s) 181, 296, 1187
Tru1I TTAA 5 cut(s) 630, 815, 866, 1091, 1292
Tru9I TTAA 5 cut(s) 630, 815, 866, 1091, 1292
TscAI CASTG 6 cut(s) 277, 475, 550, 924, 981, 1003
TseFI GTSAC 1 cut(s) 733
TseI GCWGC 2 cut(s) 456, 1024
Tsp45I GTSAC 1 cut(s) 733
TspDTI ATGAA 9 cut(s) 108, 363, 503, 570, 1020, 1115, 1188, 1215, 1272
TspRI CASTG 6 cut(s) 277, 475, 550, 924, 981, 1003
Vha464I CTTAAG 1 cut(s) 629
VpaK11BI GGWCC 2 cut(s) 234, 353
XapI RAATTY 4 cut(s) 38, 400, 1007, 1037
XceI RCATGY 2 cut(s) 770, 860
XmiI GTMKAC 2 cut(s) 287, 525
XspI CTAG 4 cut(s) 11, 479, 830, 1028
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.