Prupe.4G159800_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0011521
Physical Location & Seq
Reverse (-)
9153770 .. 9154502
733 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G159800.1

Sequence Viewer

Length: 306 bp
ATGGCTCTGGTTAACAGCTTCATCATGCCAAAGACCATGCTCCAAATGCCCATTAATTCCAAGCCCTGCAGCCTGCACAATAAGATTGTGATTATAAGATGCGCGGCGGCGAGAAGGAAAATCACTGAAGGGCCTCCTTCGCAAATTAACCAGGTACTTAGCGTTACTAGCAGGAGTTTGGGAACTGAGAAGGTGAGCCTCAGGAGCAGCAGCTTGACTGGAGAAGATGGAAAAACAAAGGAAGGAAATGCCATTGTTGATGAGGTTAACAATACAACCAAGACTGCTGATGATGCCACTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

10.87

Weight (kDa)

9.1

Isoelectric Point (pI)

45.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 95
AccII CGCG 1 cut(s) 104
AciI CCGC 2 cut(s) 104, 107
AcuI CTGAAG 1 cut(s) 147
AfaI GTAC 1 cut(s) 156
AjnI CCWGG 1 cut(s) 150
AluBI AGCT 2 cut(s) 18, 213
AluI AGCT 2 cut(s) 18, 213
AoxI GGCC 1 cut(s) 131
ApeKI GCWGC 3 cut(s) 69, 207, 210
AseI ATTAAT 1 cut(s) 54
AspLEI GCGC 1 cut(s) 104
AspS9I GGNCC 1 cut(s) 131
AsuHPI GGTGA 1 cut(s) 205
AxyI CCTNAGG 1 cut(s) 200
BbvI GCAGC 3 cut(s) 81, 219, 222
BccI CCATC 1 cut(s) 221
BciT130I CCWGG 1 cut(s) 152
BfaI CTAG 1 cut(s) 168
BfmI CTRYAG 1 cut(s) 67
BisI GCNGC 5 cut(s) 70, 105, 108, 208, 211
BlsI GCNGC 5 cut(s) 71, 106, 109, 209, 212
Bme1390I CCNGG 1 cut(s) 152
BmgT120I GGNCC 1 cut(s) 131
BmrFI CCNGG 1 cut(s) 152
BmsI GCATC 2 cut(s) 89, 283
BpmI CTGGAG 1 cut(s) 240
Bse1I ACTGG 1 cut(s) 223
Bse21I CCTNAGG 1 cut(s) 200
BseBI CCWGG 1 cut(s) 152
BseMII CTCAG 2 cut(s) 177, 214
BseNI ACTGG 1 cut(s) 223
BseXI GCAGC 3 cut(s) 81, 219, 222
BsgI GTGCAG 1 cut(s) 59
Bsh1236I CGCG 1 cut(s) 104
BshFI GGCC 1 cut(s) 133
BsnI GGCC 1 cut(s) 133
BspACI CCGC 2 cut(s) 104, 107
BspANI GGCC 1 cut(s) 133
BspCNI CTCAG 2 cut(s) 178, 213
BspFNI CGCG 1 cut(s) 104
BspMAI CTGCAG 1 cut(s) 71
BsrI ACTGG 1 cut(s) 223
Bst2UI CCWGG 1 cut(s) 152
BstC8I GCNNGC 1 cut(s) 74
BstDEI CTNAG 3 cut(s) 158, 186, 200
BstFNI CGCG 1 cut(s) 104
BstHHI GCGC 1 cut(s) 104
BstMWI GCNNNNNNNGC 5 cut(s) 46, 139, 168, 204, 293
BstNI CCWGG 1 cut(s) 152
BstSCI CCNGG 1 cut(s) 150
BstSFI CTRYAG 1 cut(s) 67
BstUI CGCG 1 cut(s) 104
BstV1I GCAGC 3 cut(s) 81, 219, 222
Bsu36I CCTNAGG 1 cut(s) 200
BsuRI GGCC 1 cut(s) 133
BtsIMutI CAGTG 2 cut(s) 123, 297
Cac8I GCNNGC 1 cut(s) 74
CfoI GCGC 1 cut(s) 104
Cfr13I GGNCC 1 cut(s) 131
CsiI ACCWGGT 1 cut(s) 150
Csp6I GTAC 1 cut(s) 155
CviAII CATG 2 cut(s) 25, 37
CviJI RGCY 7 cut(s) 5, 18, 64, 72, 133, 198, 213
CviKI_1 RGCY 7 cut(s) 5, 18, 64, 72, 133, 198, 213
CviQI GTAC 1 cut(s) 155
DdeI CTNAG 3 cut(s) 158, 186, 200
Eco57I CTGAAG 1 cut(s) 147
Eco81I CCTNAGG 1 cut(s) 200
EcoO109I RGGNCCY 1 cut(s) 131
EcoRII CCWGG 1 cut(s) 150
FaeI CATG 2 cut(s) 28, 40
FaiI YATR 3 cut(s) 26, 38, 95
FatI CATG 2 cut(s) 24, 36
Fnu4HI GCNGC 5 cut(s) 70, 105, 108, 208, 211
Fsp4HI GCNGC 5 cut(s) 70, 105, 108, 208, 211
FspBI CTAG 1 cut(s) 168
GlaI GCGC 1 cut(s) 103
GluI GCNGC 5 cut(s) 70, 105, 108, 208, 211
GsuI CTGGAG 1 cut(s) 240
HaeIII GGCC 1 cut(s) 133
HhaI GCGC 1 cut(s) 104
Hin1II CATG 2 cut(s) 28, 40
Hin6I GCGC 1 cut(s) 102
HinP1I GCGC 1 cut(s) 102
HincII GTYRAC 2 cut(s) 13, 268
HindII GTYRAC 2 cut(s) 13, 268
HpaI GTTAAC 2 cut(s) 13, 268
HphI GGTGA 1 cut(s) 205
Hpy166II GTNNAC 2 cut(s) 13, 268
Hpy188III TCNNGA 1 cut(s) 202
Hpy8I GTNNAC 2 cut(s) 13, 268
HpyAV CCTTC 5 cut(s) 108, 122, 147, 184, 236
HpyCH4V TGCA 2 cut(s) 69, 76
HpyF10VI GCNNNNNNNGC 5 cut(s) 46, 139, 168, 204, 293
HpyF3I CTNAG 3 cut(s) 158, 186, 200
Hsp92II CATG 2 cut(s) 28, 40
HspAI GCGC 1 cut(s) 102
KspAI GTTAAC 2 cut(s) 13, 268
LmnI GCTCC 2 cut(s) 45, 204
LpnPI CCDG 7 cut(s) 79, 86, 137, 157, 164, 187, 204
Lsp1109I GCAGC 3 cut(s) 81, 219, 222
LweI GCATC 2 cut(s) 89, 283
MabI ACCWGGT 1 cut(s) 150
MaeI CTAG 1 cut(s) 168
MaeIII GTNAC 1 cut(s) 163
MboII GAAGA 1 cut(s) 236
MluCI AATT 2 cut(s) 55, 144
MnlI CCTC 3 cut(s) 144, 209, 256
MseI TTAA 5 cut(s) 12, 54, 147, 267, 304
MspR9I CCNGG 1 cut(s) 152
MvaI CCWGG 1 cut(s) 152
MvnI CGCG 1 cut(s) 104
MwoI GCNNNNNNNGC 5 cut(s) 46, 139, 168, 204, 293
NlaIII CATG 2 cut(s) 28, 40
PkrI GCNGC 5 cut(s) 71, 106, 109, 209, 212
PshBI ATTAAT 1 cut(s) 54
PsiI TTATAA 1 cut(s) 95
Psp6I CCWGG 1 cut(s) 150
PspGI CCWGG 1 cut(s) 150
PspPI GGNCC 1 cut(s) 131
PstI CTGCAG 1 cut(s) 71
RsaI GTAC 1 cut(s) 156
RsaNI GTAC 1 cut(s) 155
SaqAI TTAA 5 cut(s) 12, 54, 147, 267, 304
SatI GCNGC 5 cut(s) 70, 105, 108, 208, 211
Sau96I GGNCC 1 cut(s) 131
ScrFI CCNGG 1 cut(s) 152
SetI ASST 5 cut(s) 20, 156, 195, 215, 267
SexAI ACCWGGT 1 cut(s) 150
SfaNI GCATC 2 cut(s) 89, 283
SfcI CTRYAG 1 cut(s) 67
Sse9I AATT 2 cut(s) 55, 144
SsiI CCGC 2 cut(s) 104, 107
SspMI CTAG 1 cut(s) 168
StyD4I CCNGG 1 cut(s) 150
TasI AATT 2 cut(s) 55, 144
TauI GCSGC 2 cut(s) 107, 110
Tru1I TTAA 5 cut(s) 12, 54, 147, 267, 304
Tru9I TTAA 5 cut(s) 12, 54, 147, 267, 304
TscAI CASTG 2 cut(s) 130, 304
TseI GCWGC 3 cut(s) 69, 207, 210
TspDTI ATGAA 1 cut(s) 10
TspRI CASTG 2 cut(s) 130, 304
VspI ATTAAT 1 cut(s) 54
XspI CTAG 1 cut(s) 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.