Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0042269.1

Orthogroup ID

OG0011521

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2252

Gene Structure 2252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0042269.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 920 bp

ctactgggaatctccacgttggtggagccagaactgccctcttcaattacctctttgccaggtccaatggaggcaagtttgttttgagaattgaagacactgatttggagaggtctactaaggaatctgaggaggctgtgttgcgggatctctcttggcttggtcttgattgggatgaaggacccggtgtggatggagattatgggccatatcggcaatcggaaagaaattctttgtacaagcagtatgctgagaagcttttggagtctggttatgtctatcgctgcttttgctccagtgaggaactagaaaaaatgaaggagattgcaaagctgaagcaactgcctccagtatactcaggaaagtgggccagtgcaactaatgaagaagtacaagtagagctggaaaaaggaactccttacacatataggtttcgtgttccaaaggaaggaagtctgaagatcaatgatctcattcgagggcaggtcagttggaacttggacactcttggagattttgtaattatgagaagcaatggtcaaccggtgtacaatttttgtgtcacagttgatgatgctaccatggctatctcacatgttattagagcagaggagcatttaccaaatactctaaggcaagcattaatatataaggcactaggatttccaatgccttcctttgcacatgtatccttaattcttgcacctgatcgaagtaagttatcaaaaaggcatggagcaacttcagtgggccagggattcgctgggaatattgataagtattattgtaatctaataactagaactttacagtttagggagatgggctatctaccacaggcaatggtgaactacttggcactgttaggttggggtgatggcactgaaaatgaatttttcaccttggagcagctaggttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006424 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0006996 GO:0007005 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009791 GO:0009908 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0035670 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0061458 GO:0071704 GO:0071840 GO:0090304 GO:0090567 GO:0099402 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko00970 ko01100 ko01110 ko01120 map00860 map00970 map01100 map01110 map01120

Pfam Domains

Protein Families

tRNA-synt_1c

Protein Analysis

305

Amino Acids

34.46

Weight (kDa)

5.67

Isoelectric Point (pI)

35.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011521)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g14910 FvH4_2g14910 FvH4_2g14910
malus_domestica	MD00G1184100.v1.1
prunus_persica	Prupe.4G159800_v2.0.a1
pyrus_communis	pycom11g23440
rosa_chinensis	RchiOBHm_Chr2g0162471 RchiOBHm_Chr5g0030101
rosa_multiflora	Rmu_sc0042269.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049890 Rroxscaffold_1G00049930
rosa_rugosa	Rorug05G0117100 Rorug05G0117800
rosa_samantha	Rh5AG210100 Rh5BG209100 Rh5CG232900 Rh5DG213400 Rh6AG219500
rosa_wichuraiana	Rw5G019150 Rw5G019180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	474
AccI	GTMKAC	2 cut(s)	115, 353
AciI	CCGC	1 cut(s)	144
AclWI	GGATC	1 cut(s)	155
AcsI	RAATTY	2 cut(s)	228, 892
AcuI	CTGAAG	3 cut(s)	355, 478, 728
AfaI	GTAC	3 cut(s)	238, 392, 550
AfiI	CCNNNNNNNGG	1 cut(s)	448
AflIII	ACRYGT	2 cut(s)	594, 684
AgeI	ACCGGT	1 cut(s)	543
AgsI	TTSAA	2 cut(s)	45, 94
AjnI	CCWGG	2 cut(s)	58, 752
AleI	CACNNNNGTG	1 cut(s)	20
AluBI	AGCT	4 cut(s)	258, 333, 402, 912
AluI	AGCT	4 cut(s)	258, 333, 402, 912
AlwI	GGATC	1 cut(s)	155
AoxI	GGCC	3 cut(s)	205, 368, 750
ApeKI	GCWGC	2 cut(s)	284, 909
ApoI	RAATTY	2 cut(s)	228, 892
AseI	ATTAAT	1 cut(s)	643
AsiGI	ACCGGT	1 cut(s)	543
AspS9I	GGNCC	5 cut(s)	62, 181, 205, 368, 750
AsuC2I	CCSGG	1 cut(s)	185
AsuHPI	GGTGA	3 cut(s)	858, 886, 891
AvaII	GGWCC	2 cut(s)	62, 181
BbsI	GAAGAC	1 cut(s)	101
BbvI	GCAGC	1 cut(s)	271
BccI	CCATC	3 cut(s)	187, 816, 871
BciT130I	CCWGG	2 cut(s)	60, 754
BciVI	GTATCC	1 cut(s)	699
BcnI	CCSGG	1 cut(s)	185
BfaI	CTAG	4 cut(s)	307, 658, 800, 913
BfuAI	ACCTGC	1 cut(s)	474
BfuI	GTATCC	1 cut(s)	699
BglI	GCCNNNNNGGC	1 cut(s)	213
BisI	GCNGC	2 cut(s)	285, 910
BlsI	GCNGC	2 cut(s)	286, 911
Bme1390I	CCNGG	3 cut(s)	60, 185, 754
Bme18I	GGWCC	2 cut(s)	62, 181
BmgT120I	GGNCC	5 cut(s)	62, 181, 205, 368, 750
BmiI	GGNNCC	2 cut(s)	27, 183
BmrFI	CCNGG	3 cut(s)	60, 185, 754
BmrI	ACTGGG	1 cut(s)	14
BmsI	GCATC	1 cut(s)	564
BmuI	ACTGGG	1 cut(s)	14
BpiI	GAAGAC	1 cut(s)	101
BpmI	CTGGAG	2 cut(s)	279, 332
BpuMI	CCSGG	1 cut(s)	185
BsaJI	CCNNGG	3 cut(s)	581, 753, 902
BsaWI	WCCGGW	1 cut(s)	543
BsaXI	ACNNNNNCTCC	4 cut(s)	124, 154, 503, 533
Bsc4I	CCNNNNNNNGG	1 cut(s)	448
Bse118I	RCCGGY	1 cut(s)	543
Bse1I	ACTGG	4 cut(s)	9, 296, 349, 371
Bse3DI	GCAATG	2 cut(s)	540, 848
BseBI	CCWGG	2 cut(s)	60, 754
BseDI	CCNNGG	3 cut(s)	581, 753, 902
BseGI	GGATG	2 cut(s)	180, 198
BseLI	CCNNNNNNNGG	1 cut(s)	448
BseMI	GCAATG	2 cut(s)	540, 848
BseMII	CTCAG	3 cut(s)	119, 242, 371
BseNI	ACTGG	4 cut(s)	9, 296, 349, 371
BseRI	GAGGAG	2 cut(s)	145, 625
BseXI	GCAGC	1 cut(s)	271
BseYI	CCCAGC	1 cut(s)	763
BshFI	GGCC	3 cut(s)	207, 370, 752
BshTI	ACCGGT	1 cut(s)	543
BsiSI	CCGG	2 cut(s)	185, 544
BslI	CCNNNNNNNGG	1 cut(s)	448
BsnI	GGCC	3 cut(s)	207, 370, 752
Bsp1407I	TGTACA	2 cut(s)	236, 548
Bsp143I	GATC	4 cut(s)	147, 461, 468, 708
Bsp19I	CCATGG	1 cut(s)	581
BspACI	CCGC	1 cut(s)	144
BspANI	GGCC	3 cut(s)	207, 370, 752
BspCNI	CTCAG	3 cut(s)	120, 243, 370
BspLI	GGNNCC	2 cut(s)	27, 183
BspMI	ACCTGC	1 cut(s)	474
BspPI	GGATC	1 cut(s)	155
BsrDI	GCAATG	2 cut(s)	540, 848
BsrFI	RCCGGY	1 cut(s)	543
BsrGI	TGTACA	2 cut(s)	236, 548
BsrI	ACTGG	4 cut(s)	9, 296, 349, 371
BssAI	RCCGGY	1 cut(s)	543
BssECI	CCNNGG	3 cut(s)	581, 753, 902
BssMI	GATC	4 cut(s)	147, 461, 468, 708
BssNAI	GTATAC	1 cut(s)	354
BssT1I	CCWWGG	2 cut(s)	581, 902
Bst1107I	GTATAC	1 cut(s)	354
Bst2UI	CCWGG	2 cut(s)	60, 754
Bst4CI	ACNGT	3 cut(s)	567, 812, 863
Bst6I	CTCTTC	1 cut(s)	46
BstAUI	TGTACA	2 cut(s)	236, 548
BstC8I	GCNNGC	1 cut(s)	638
BstDEI	CTNAG	5 cut(s)	119, 128, 251, 357, 631
BstDSI	CCRYGG	1 cut(s)	581
BstF5I	GGATG	2 cut(s)	180, 198
BstKTI	GATC	4 cut(s)	150, 464, 471, 711
BstMBI	GATC	4 cut(s)	147, 461, 468, 708
BstMWI	GCNNNNNNNGC	4 cut(s)	34, 213, 290, 583
BstNI	CCWGG	2 cut(s)	60, 754
BstNSI	RCATGY	2 cut(s)	598, 688
BstSCI	CCNGG	3 cut(s)	58, 183, 752
BstV1I	GCAGC	1 cut(s)	271
BstV2I	GAAGAC	1 cut(s)	101
BstX2I	RGATCY	1 cut(s)	147
BstXI	CCANNNNNNTGG	1 cut(s)	22
BstYI	RGATCY	1 cut(s)	147
BstZ17I	GTATAC	1 cut(s)	354
BsuI	GTATCC	1 cut(s)	699
BsuRI	GGCC	3 cut(s)	207, 370, 752
BtgI	CCRYGG	1 cut(s)	581
BtsCI	GGATG	2 cut(s)	180, 198
BtsIMutI	CAGTG	6 cut(s)	98, 303, 378, 752, 859, 881
BveI	ACCTGC	1 cut(s)	474
Cac8I	GCNNGC	1 cut(s)	638
Cfr10I	RCCGGY	1 cut(s)	543
Cfr13I	GGNCC	5 cut(s)	62, 181, 205, 368, 750
Csp6I	GTAC	3 cut(s)	237, 391, 549
CspAI	ACCGGT	1 cut(s)	543
CspCI	CAANNNNNGTGG	2 cut(s)	728, 763
CviAII	CATG	4 cut(s)	582, 595, 685, 733
CviQI	GTAC	3 cut(s)	237, 391, 549
DdeI	CTNAG	5 cut(s)	119, 128, 251, 357, 631
DpnI	GATC	4 cut(s)	149, 463, 470, 710
DpnII	GATC	4 cut(s)	147, 461, 468, 708
Eam1104I	CTCTTC	1 cut(s)	46
EarI	CTCTTC	1 cut(s)	46
Eco130I	CCWWGG	2 cut(s)	581, 902
Eco47I	GGWCC	2 cut(s)	62, 181
Eco57I	CTGAAG	3 cut(s)	355, 478, 728
EcoO109I	RGGNCCY	1 cut(s)	181
EcoRII	CCWGG	2 cut(s)	58, 752
EcoT14I	CCWWGG	2 cut(s)	581, 902
ErhI	CCWWGG	2 cut(s)	581, 902
FaeI	CATG	4 cut(s)	585, 598, 688, 736
FalI	AAGNNNNNCTT	2 cut(s)	216, 248
FatI	CATG	4 cut(s)	581, 594, 684, 732
FauI	CCCGC	1 cut(s)	137
FblI	GTMKAC	2 cut(s)	115, 353
Fnu4HI	GCNGC	2 cut(s)	285, 910
FokI	GGATG	2 cut(s)	187, 205
Fsp4HI	GCNGC	2 cut(s)	285, 910
FspBI	CTAG	4 cut(s)	307, 658, 800, 913
GluI	GCNGC	2 cut(s)	285, 910
GsaI	CCCAGC	1 cut(s)	767
GsuI	CTGGAG	2 cut(s)	279, 332
HaeIII	GGCC	3 cut(s)	207, 370, 752
HapII	CCGG	2 cut(s)	185, 544
Hin1II	CATG	4 cut(s)	585, 598, 688, 736
HincII	GTYRAC	1 cut(s)	541
HindII	GTYRAC	1 cut(s)	541
HindIII	AAGCTT	1 cut(s)	256
HinfI	GANTC	4 cut(s)	9, 124, 265, 758
HpaII	CCGG	2 cut(s)	185, 544
HphI	GGTGA	3 cut(s)	858, 886, 891
Hpy166II	GTNNAC	5 cut(s)	116, 354, 541, 549, 849
Hpy188I	TCNGA	3 cut(s)	129, 222, 458
Hpy188III	TCNNGA	2 cut(s)	166, 359
Hpy8I	GTNNAC	5 cut(s)	116, 354, 541, 549, 849
HpyAV	CCTTC	4 cut(s)	172, 312, 442, 683
HpyCH4III	ACNGT	3 cut(s)	567, 812, 863
HpyCH4IV	ACGT	1 cut(s)	17
HpyCH4V	TGCA	4 cut(s)	328, 376, 682, 703
HpyF10VI	GCNNNNNNNGC	4 cut(s)	34, 213, 290, 583
HpyF3I	CTNAG	5 cut(s)	119, 128, 251, 357, 631
HpySE526I	ACGT	1 cut(s)	17
Hsp92II	CATG	4 cut(s)	585, 598, 688, 736
Kzo9I	GATC	4 cut(s)	147, 461, 468, 708
LmnI	GCTCC	5 cut(s)	25, 298, 612, 736, 906
Lsp1109I	GCAGC	1 cut(s)	271
LweI	GCATC	1 cut(s)	564
MaeI	CTAG	4 cut(s)	307, 658, 800, 913
MaeII	ACGT	1 cut(s)	17
MaeIII	GTNAC	1 cut(s)	561
MalI	GATC	4 cut(s)	149, 463, 470, 710
MboI	GATC	4 cut(s)	147, 461, 468, 708
MboII	GAAGA	4 cut(s)	33, 106, 397, 471
MflI	RGATCY	1 cut(s)	147
MluCI	AATT	7 cut(s)	45, 89, 228, 521, 552, 695, 892
MlyI	GAGTC	1 cut(s)	274
MmeI	TCCRAC	1 cut(s)	472
MseI	TTAA	2 cut(s)	643, 694
MslI	CAYNNNNRTG	1 cut(s)	20
MspI	CCGG	2 cut(s)	185, 544
MspR9I	CCNGG	3 cut(s)	60, 185, 754
MvaI	CCWGG	2 cut(s)	60, 754
MwoI	GCNNNNNNNGC	4 cut(s)	34, 213, 290, 583
NciI	CCSGG	1 cut(s)	185
NcoI	CCATGG	1 cut(s)	581
NdeII	GATC	4 cut(s)	147, 461, 468, 708
NlaIII	CATG	4 cut(s)	585, 598, 688, 736
NlaIV	GGNNCC	2 cut(s)	27, 183
NmuCI	GTSAC	1 cut(s)	561
NspI	RCATGY	2 cut(s)	598, 688
OliI	CACNNNNGTG	1 cut(s)	20
PciI	ACATGT	2 cut(s)	594, 684
PfeI	GAWTC	3 cut(s)	9, 124, 758
PinAI	ACCGGT	1 cut(s)	543
PkrI	GCNGC	2 cut(s)	286, 911
PleI	GAGTC	1 cut(s)	273
PpsI	GAGTC	1 cut(s)	273
PpuMI	RGGWCCY	1 cut(s)	181
PscI	ACATGT	2 cut(s)	594, 684
PshBI	ATTAAT	1 cut(s)	643
Psp5II	RGGWCCY	1 cut(s)	181
Psp6I	CCWGG	2 cut(s)	58, 752
PspFI	CCCAGC	1 cut(s)	763
PspGI	CCWGG	2 cut(s)	58, 752
PspN4I	GGNNCC	2 cut(s)	27, 183
PspPI	GGNCC	5 cut(s)	62, 181, 205, 368, 750
PspPPI	RGGWCCY	1 cut(s)	181
PsuI	RGATCY	1 cut(s)	147
RsaI	GTAC	3 cut(s)	238, 392, 550
RsaNI	GTAC	3 cut(s)	237, 391, 549
RseI	CAYNNNNRTG	1 cut(s)	20
SaqAI	TTAA	2 cut(s)	643, 694
SatI	GCNGC	2 cut(s)	285, 910
Sau3AI	GATC	4 cut(s)	147, 461, 468, 708
Sau96I	GGNCC	5 cut(s)	62, 181, 205, 368, 750
SchI	GAGTC	1 cut(s)	274
ScrFI	CCNGG	3 cut(s)	60, 185, 754
SfaNI	GCATC	1 cut(s)	564
SinI	GGWCC	2 cut(s)	62, 181
SmiMI	CAYNNNNRTG	1 cut(s)	20
Sse9I	AATT	7 cut(s)	45, 89, 228, 521, 552, 695, 892
SsiI	CCGC	1 cut(s)	144
SspI	AATATT	1 cut(s)	771
SspMI	CTAG	4 cut(s)	307, 658, 800, 913
StyD4I	CCNGG	3 cut(s)	58, 183, 752
StyI	CCWWGG	2 cut(s)	581, 902
TaaI	ACNGT	3 cut(s)	567, 812, 863
TaiI	ACGT	1 cut(s)	20
TaqI	TCGA	2 cut(s)	477, 711
TasI	AATT	7 cut(s)	45, 89, 228, 521, 552, 695, 892
TatI	WGTACW	3 cut(s)	236, 390, 548
TfiI	GAWTC	3 cut(s)	9, 124, 758
Tru1I	TTAA	2 cut(s)	643, 694
Tru9I	TTAA	2 cut(s)	643, 694
TscAI	CASTG	6 cut(s)	105, 303, 378, 752, 866, 888
TseFI	GTSAC	1 cut(s)	561
TseI	GCWGC	2 cut(s)	284, 909
Tsp45I	GTSAC	1 cut(s)	561
TspDTI	ATGAA	4 cut(s)	191, 331, 398, 905
TspRI	CASTG	6 cut(s)	105, 303, 378, 752, 866, 888
VpaK11BI	GGWCC	2 cut(s)	62, 181
VspI	ATTAAT	1 cut(s)	643
XapI	RAATTY	2 cut(s)	228, 892
XceI	RCATGY	2 cut(s)	598, 688
XcmI	CCANNNNNNNNNTGG	1 cut(s)	760
XmiI	GTMKAC	2 cut(s)	115, 353
XspI	CTAG	4 cut(s)	307, 658, 800, 913

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.