Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0015523

Physical Location & Seq

Genomic Coordinates Forward (+)

11245166 .. 11245702

Gene Structure 537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1032000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGTCGTTTCCAGGTCAACCTTTTCTTACTCCGCCGGAGAACCTCGTCCAGTCTACGAATGAGGATCCAGCAGCCCCGCTCCGGAATCTCTCGATGGTCCGAACAAGAATGGATTCGCTGCAAAGCTTCCTCACCGAATCAATCCACGCCAACGCTCTAATCAGCAAGGACCAGATGGACATGGTTTCCACTGGCATCGCTTCCGCCATCCACGAAATCATCTCAAACGGCGCCGCTCTGTTGGCTTTCTCTCAGAACTCGATACCCTCATCGGACCCGACCCGAACACACTCCGCTAAAATCGAGGCTTCCGAGGTCAAGAAAGAGATAGAAGTGAACGATTGTGGAAAGTATGACGCAGACGGCGGCGAGATTGTGGAGGTGGACGCGATGGAGCTGCTGGCGGAGCACATCCATTACTGCGAGATTTGCGGGAAGGGTTTCAAGCGAGATGCGAATTTGAGAATGCACATGCGGCCCACGGGAACCGGAGCCCCCGAGGCGTTGACCAAACCGGTGAAGACCCCGCCGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009268 GO:0009628 GO:0009889 GO:0010035 GO:0010038 GO:0010044 GO:0010447 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2 zf-met

Protein Analysis

179

Amino Acids

19.28

Weight (kDa)

5.19

Isoelectric Point (pI)

56.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015523)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20670
malus_domestica	MD01G1032000.v1.1 MD15G1323400.v1.1
prunus_persica	Prupe.6G188400_v2.0.a1
pyrus_communis	pycom01g05930
rosa_chinensis	RchiOBHm_Chr2g0113111
rosa_laevigata	RLG00000018044
rosa_multiflora	Rmu_sc0005949.1_g000014 Rmu_sc0039502.1_g000001
rosa_roxburghii	Rroxscaffold_2G00129630 Rroxscaffold_2G00129700
rosa_rugosa	Rorug02G0185300
rosa_samantha	Rh2AG239700 Rh2CG243800 Rh2DG247600
rosa_wichuraiana	Rw2G018760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	230
AccBSI	CCGCTC	2 cut(s)	79, 236
AccI	GTMKAC	1 cut(s)	53
AccII	CGCG	1 cut(s)	389
AccIII	TCCGGA	1 cut(s)	81
AclWI	GGATC	2 cut(s)	59, 72
AcsI	RAATTY	1 cut(s)	457
AcyI	GRCGYC	1 cut(s)	231
AfiI	CCNNNNNNNGG	1 cut(s)	81
AgeI	ACCGGT	1 cut(s)	514
AgsI	TTSAA	1 cut(s)	445
AjnI	CCWGG	1 cut(s)	10
AluBI	AGCT	2 cut(s)	126, 397
AluI	AGCT	2 cut(s)	126, 397
Alw21I	GWGCWC	1 cut(s)	411
AlwI	GGATC	2 cut(s)	59, 72
Ama87I	CYCGRG	1 cut(s)	497
Aor13HI	TCCGGA	1 cut(s)	81
AoxI	GGCC	1 cut(s)	476
ApeKI	GCWGC	3 cut(s)	71, 118, 397
ApoI	RAATTY	1 cut(s)	457
AsiGI	ACCGGT	1 cut(s)	514
Asp700I	GAANNNNTTC	2 cut(s)	112, 440
AspLEI	GCGC	1 cut(s)	233
AspS9I	GGNCC	4 cut(s)	97, 169, 274, 477
AsuHPI	GGTGA	2 cut(s)	124, 529
AvaI	CYCGRG	1 cut(s)	497
AvaII	GGWCC	3 cut(s)	97, 169, 274
BamHI	GGATCC	1 cut(s)	64
BanI	GGYRCC	1 cut(s)	230
BanII	GRGCYC	1 cut(s)	496
BbsI	GAAGAC	1 cut(s)	527
Bbv12I	GWGCWC	1 cut(s)	411
BbvI	GCAGC	3 cut(s)	83, 105, 384
BccI	CCATC	4 cut(s)	88, 169, 215, 385
BceAI	ACGGC	2 cut(s)	244, 379
BcgI	CGANNNNNNTGC	2 cut(s)	379, 413
BciT130I	CCWGG	1 cut(s)	12
BfoI	RGCGCY	1 cut(s)	234
BglI	GCCNNNNNGGC	1 cut(s)	500
BisI	GCNGC	6 cut(s)	72, 119, 234, 367, 398, 476
BlsI	GCNGC	6 cut(s)	73, 120, 235, 368, 399, 477
Bme1390I	CCNGG	1 cut(s)	12
Bme18I	GGWCC	3 cut(s)	97, 169, 274
BmeT110I	CYCGRG	1 cut(s)	497
BmgT120I	GGNCC	4 cut(s)	97, 169, 274, 477
BmiI	GGNNCC	5 cut(s)	66, 232, 276, 487, 493
BmrFI	CCNGG	1 cut(s)	12
BmsI	GCATC	2 cut(s)	204, 442
BpiI	GAAGAC	1 cut(s)	527
BsaHI	GRCGYC	1 cut(s)	231
BsaJI	CCNNGG	3 cut(s)	312, 480, 498
BsaWI	WCCGGW	3 cut(s)	81, 488, 514
Bsc4I	CCNNNNNNNGG	1 cut(s)	81
Bse118I	RCCGGY	1 cut(s)	514
Bse1I	ACTGG	2 cut(s)	49, 196
BseAI	TCCGGA	1 cut(s)	81
BseBI	CCWGG	1 cut(s)	12
BseDI	CCNNGG	3 cut(s)	312, 480, 498
BseGI	GGATG	2 cut(s)	207, 411
BseLI	CCNNNNNNNGG	1 cut(s)	81
BseMII	CTCAG	1 cut(s)	266
BseNI	ACTGG	2 cut(s)	49, 196
BseXI	GCAGC	3 cut(s)	83, 105, 384
Bsh1236I	CGCG	1 cut(s)	389
BshFI	GGCC	1 cut(s)	478
BshNI	GGYRCC	1 cut(s)	230
BshTI	ACCGGT	1 cut(s)	514
BsiHKAI	GWGCWC	1 cut(s)	411
BsiHKCI	CYCGRG	1 cut(s)	497
BsiSI	CCGG	4 cut(s)	35, 82, 489, 515
BslI	CCNNNNNNNGG	1 cut(s)	81
BsmI	GAATGC	1 cut(s)	471
BsnI	GGCC	1 cut(s)	478
BsoBI	CYCGRG	1 cut(s)	497
Bsp1286I	GDGCHC	2 cut(s)	411, 496
Bsp13I	TCCGGA	1 cut(s)	81
Bsp143I	GATC	1 cut(s)	64
BspANI	GGCC	1 cut(s)	478
BspCNI	CTCAG	1 cut(s)	265
BspEI	TCCGGA	1 cut(s)	81
BspFNI	CGCG	1 cut(s)	389
BspLI	GGNNCC	5 cut(s)	66, 232, 276, 487, 493
BspPI	GGATC	2 cut(s)	59, 72
BspT107I	GGYRCC	1 cut(s)	230
BsrBI	CCGCTC	2 cut(s)	79, 236
BsrFI	RCCGGY	1 cut(s)	514
BsrI	ACTGG	2 cut(s)	49, 196
BssAI	RCCGGY	1 cut(s)	514
BssECI	CCNNGG	3 cut(s)	312, 480, 498
BssMI	GATC	1 cut(s)	64
BssNI	GRCGYC	1 cut(s)	231
Bst2UI	CCWGG	1 cut(s)	12
BstACI	GRCGYC	1 cut(s)	231
BstC8I	GCNNGC	1 cut(s)	402
BstDEI	CTNAG	1 cut(s)	252
BstDSI	CCRYGG	1 cut(s)	480
BstF5I	GGATG	2 cut(s)	207, 411
BstFNI	CGCG	1 cut(s)	389
BstH2I	RGCGCY	1 cut(s)	234
BstHHI	GCGC	1 cut(s)	233
BstKTI	GATC	1 cut(s)	67
BstMBI	GATC	1 cut(s)	64
BstMWI	GCNNNNNNNGC	5 cut(s)	242, 406, 429, 475, 500
BstNI	CCWGG	1 cut(s)	12
BstNSI	RCATGY	1 cut(s)	475
BstSCI	CCNGG	1 cut(s)	10
BstUI	CGCG	1 cut(s)	389
BstV1I	GCAGC	3 cut(s)	83, 105, 384
BstV2I	GAAGAC	1 cut(s)	527
BstX2I	RGATCY	1 cut(s)	64
BstYI	RGATCY	1 cut(s)	64
BsuRI	GGCC	1 cut(s)	478
BtgI	CCRYGG	1 cut(s)	480
BtgZI	GCGATG	2 cut(s)	181, 404
BtsCI	GGATG	2 cut(s)	207, 411
BtsIMutI	CAGTG	1 cut(s)	189
Cac8I	GCNNGC	1 cut(s)	402
CfoI	GCGC	1 cut(s)	233
Cfr10I	RCCGGY	1 cut(s)	514
Cfr13I	GGNCC	4 cut(s)	97, 169, 274, 477
CseI	GACGC	2 cut(s)	365, 395
CspAI	ACCGGT	1 cut(s)	514
CviAII	CATG	2 cut(s)	181, 472
CviJI	RGCY	7 cut(s)	74, 126, 245, 308, 397, 478, 494
CviKI_1	RGCY	7 cut(s)	74, 126, 245, 308, 397, 478, 494
DdeI	CTNAG	1 cut(s)	252
DinI	GGCGCC	1 cut(s)	232
DpnI	GATC	1 cut(s)	66
DpnII	GATC	1 cut(s)	64
EciI	GGCGGA	3 cut(s)	21, 193, 419
Eco24I	GRGCYC	1 cut(s)	496
Eco47I	GGWCC	3 cut(s)	97, 169, 274
Eco88I	CYCGRG	1 cut(s)	497
EcoRII	CCWGG	1 cut(s)	10
EcoT38I	GRGCYC	1 cut(s)	496
EgeI	GGCGCC	1 cut(s)	232
EheI	GGCGCC	1 cut(s)	232
FaeI	CATG	2 cut(s)	184, 475
FaiI	YATR	3 cut(s)	182, 354, 473
FatI	CATG	2 cut(s)	180, 471
FauI	CCCGC	3 cut(s)	84, 425, 534
FblI	GTMKAC	1 cut(s)	53
Fnu4HI	GCNGC	6 cut(s)	72, 119, 234, 367, 398, 476
FokI	GGATG	2 cut(s)	194, 398
FriOI	GRGCYC	1 cut(s)	496
Fsp4HI	GCNGC	6 cut(s)	72, 119, 234, 367, 398, 476
GlaI	GCGC	1 cut(s)	232
GluI	GCNGC	6 cut(s)	72, 119, 234, 367, 398, 476
HaeII	RGCGCY	1 cut(s)	234
HaeIII	GGCC	1 cut(s)	478
HapII	CCGG	4 cut(s)	35, 82, 489, 515
HgaI	GACGC	2 cut(s)	365, 395
HhaI	GCGC	1 cut(s)	233
Hin1I	GRCGYC	1 cut(s)	231
Hin1II	CATG	2 cut(s)	184, 475
Hin6I	GCGC	1 cut(s)	231
HinP1I	GCGC	1 cut(s)	231
HincII	GTYRAC	2 cut(s)	17, 507
HindII	GTYRAC	2 cut(s)	17, 507
HindIII	AAGCTT	1 cut(s)	124
HinfI	GANTC	3 cut(s)	85, 113, 137
HpaII	CCGG	4 cut(s)	35, 82, 489, 515
HphI	GGTGA	2 cut(s)	124, 529
Hpy166II	GTNNAC	5 cut(s)	17, 54, 337, 385, 507
Hpy188I	TCNGA	4 cut(s)	101, 255, 274, 313
Hpy188III	TCNNGA	3 cut(s)	82, 91, 319
Hpy8I	GTNNAC	5 cut(s)	17, 54, 337, 385, 507
HpyAV	CCTTC	1 cut(s)	430
HpyCH4V	TGCA	2 cut(s)	121, 469
HpyF10VI	GCNNNNNNNGC	5 cut(s)	242, 406, 429, 475, 500
HpyF3I	CTNAG	1 cut(s)	252
Hsp92I	GRCGYC	1 cut(s)	231
Hsp92II	CATG	2 cut(s)	184, 475
HspAI	GCGC	1 cut(s)	231
KasI	GGCGCC	1 cut(s)	230
Kpn2I	TCCGGA	1 cut(s)	81
Kzo9I	GATC	1 cut(s)	64
LmnI	GCTCC	4 cut(s)	84, 394, 406, 491
Lsp1109I	GCAGC	3 cut(s)	83, 105, 384
LweI	GCATC	2 cut(s)	204, 442
MalI	GATC	1 cut(s)	66
MbiI	CCGCTC	2 cut(s)	79, 236
MboI	GATC	1 cut(s)	64
MboII	GAAGA	1 cut(s)	532
MflI	RGATCY	1 cut(s)	64
MhlI	GDGCHC	2 cut(s)	411, 496
MluCI	AATT	1 cut(s)	457
Mly113I	GGCGCC	1 cut(s)	231
MnlI	CCTC	8 cut(s)	53, 55, 140, 277, 298, 307, 373, 493
MroI	TCCGGA	1 cut(s)	81
MroXI	GAANNNNTTC	2 cut(s)	112, 440
MspI	CCGG	4 cut(s)	35, 82, 489, 515
MspR9I	CCNGG	1 cut(s)	12
Mva1269I	GAATGC	1 cut(s)	471
MvaI	CCWGG	1 cut(s)	12
MvnI	CGCG	1 cut(s)	389
MwoI	GCNNNNNNNGC	5 cut(s)	242, 406, 429, 475, 500
NarI	GGCGCC	1 cut(s)	231
NdeII	GATC	1 cut(s)	64
NlaIII	CATG	2 cut(s)	184, 475
NlaIV	GGNNCC	5 cut(s)	66, 232, 276, 487, 493
NspI	RCATGY	1 cut(s)	475
PcsI	WCGNNNNNNNCGW	1 cut(s)	309
PctI	GAATGC	1 cut(s)	471
PdmI	GAANNNNTTC	2 cut(s)	112, 440
PfeI	GAWTC	3 cut(s)	85, 113, 137
PinAI	ACCGGT	1 cut(s)	514
PkrI	GCNGC	6 cut(s)	73, 120, 235, 368, 399, 477
PluTI	GGCGCC	1 cut(s)	234
Psp6I	CCWGG	1 cut(s)	10
PspGI	CCWGG	1 cut(s)	10
PspN4I	GGNNCC	5 cut(s)	66, 232, 276, 487, 493
PspPI	GGNCC	4 cut(s)	97, 169, 274, 477
PsuI	RGATCY	1 cut(s)	64
SatI	GCNGC	6 cut(s)	72, 119, 234, 367, 398, 476
Sau3AI	GATC	1 cut(s)	64
Sau96I	GGNCC	4 cut(s)	97, 169, 274, 477
ScrFI	CCNGG	1 cut(s)	12
SduI	GDGCHC	2 cut(s)	411, 496
SetI	ASST	7 cut(s)	16, 22, 45, 128, 318, 384, 399
SfaNI	GCATC	2 cut(s)	204, 442
SfoI	GGCGCC	1 cut(s)	232
SinI	GGWCC	3 cut(s)	97, 169, 274
Sse9I	AATT	1 cut(s)	457
SspDI	GGCGCC	1 cut(s)	230
StyD4I	CCNGG	1 cut(s)	10
TaqI	TCGA	3 cut(s)	92, 260, 303
TasI	AATT	1 cut(s)	457
TauI	GCSGC	3 cut(s)	236, 369, 478
TfiI	GAWTC	3 cut(s)	85, 113, 137
TscAI	CASTG	1 cut(s)	196
TseI	GCWGC	3 cut(s)	71, 118, 397
TspRI	CASTG	1 cut(s)	196
VpaK11BI	GGWCC	3 cut(s)	97, 169, 274
XapI	RAATTY	1 cut(s)	457
XceI	RCATGY	1 cut(s)	475
XmiI	GTMKAC	1 cut(s)	53
XmnI	GAANNNNTTC	2 cut(s)	112, 440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.