Protein SENSITIVE TO PROTON RHIZOTOXICITY
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_1g20670 |
| malus_domestica | MD01G1032000.v1.1 MD15G1323400.v1.1 |
| prunus_persica | Prupe.6G188400_v2.0.a1 |
| pyrus_communis | pycom01g05930 |
| rosa_chinensis | RchiOBHm_Chr2g0113111 |
| rosa_laevigata | RLG00000018044 |
| rosa_multiflora | Rmu_sc0005949.1_g000014 Rmu_sc0039502.1_g000001 |
| rosa_roxburghii | Rroxscaffold_2G00129630 Rroxscaffold_2G00129700 |
| rosa_rugosa | Rorug02G0185300 |
| rosa_samantha | Rh2AG239700 Rh2CG243800 Rh2DG247600 |
| rosa_wichuraiana | Rw2G018760 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 929 |
| AccB1I | GGYRCC | 1 cut(s) | 236 |
| AccBSI | CCGCTC | 1 cut(s) | 85 |
| AccII | CGCG | 6 cut(s) | 35, 50, 219, 392, 458, 757 |
| AccIII | TCCGGA | 1 cut(s) | 87 |
| AclWI | GGATC | 2 cut(s) | 208, 891 |
| AcoI | YGGCCR | 2 cut(s) | 516, 537 |
| AcsI | RAATTY | 3 cut(s) | 460, 955, 974 |
| AcuI | CTGAAG | 2 cut(s) | 81, 758 |
| AcvI | CACGTG | 2 cut(s) | 604, 771 |
| AcyI | GRCGYC | 2 cut(s) | 503, 926 |
| AfaI | GTAC | 1 cut(s) | 677 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 73, 578, 579, 595, 1011 |
| AgeI | ACCGGT | 2 cut(s) | 11, 492 |
| AgsI | TTSAA | 6 cut(s) | 448, 499, 652, 727, 827, 935 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 69, 101 |
| AluBI | AGCT | 5 cut(s) | 317, 400, 705, 783, 802 |
| AluI | AGCT | 5 cut(s) | 317, 400, 705, 783, 802 |
| Alw21I | GWGCWC | 1 cut(s) | 414 |
| Alw26I | GTCTC | 2 cut(s) | 196, 447 |
| AlwI | GGATC | 2 cut(s) | 208, 891 |
| Ama87I | CYCGRG | 3 cut(s) | 265, 506, 787 |
| Aor13HI | TCCGGA | 1 cut(s) | 87 |
| AoxI | GGCC | 5 cut(s) | 249, 510, 516, 537, 816 |
| ApeKI | GCWGC | 5 cut(s) | 124, 400, 690, 765, 869 |
| ApoI | RAATTY | 3 cut(s) | 460, 955, 974 |
| AsiGI | ACCGGT | 2 cut(s) | 11, 492 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 347, 443, 494, 647 |
| AspLEI | GCGC | 4 cut(s) | 52, 619, 757, 765 |
| AspS9I | GGNCC | 4 cut(s) | 70, 103, 175, 269 |
| AsuC2I | CCSGG | 7 cut(s) | 68, 74, 266, 267, 536, 559, 614 |
| AsuHPI | GGTGA | 2 cut(s) | 130, 640 |
| AvaI | CYCGRG | 3 cut(s) | 265, 506, 787 |
| AvaII | GGWCC | 4 cut(s) | 70, 103, 175, 269 |
| BaeGI | GKGCMC | 4 cut(s) | 572, 603, 813, 834 |
| BalI | TGGCCA | 1 cut(s) | 518 |
| BanI | GGYRCC | 1 cut(s) | 236 |
| BanII | GRGCYC | 1 cut(s) | 484 |
| BauI | CACGAG | 3 cut(s) | 565, 679, 778 |
| BbrPI | CACGTG | 2 cut(s) | 604, 771 |
| BbsI | GAAGAC | 2 cut(s) | 69, 560 |
| Bbv12I | GWGCWC | 1 cut(s) | 414 |
| BbvI | GCAGC | 5 cut(s) | 111, 387, 677, 752, 856 |
| BccI | CCATC | 4 cut(s) | 94, 175, 388, 1004 |
| BceAI | ACGGC | 2 cut(s) | 72, 891 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 382, 416, 645, 679 |
| BciVI | GTATCC | 1 cut(s) | 961 |
| BclI | TGATCA | 1 cut(s) | 165 |
| BcnI | CCSGG | 7 cut(s) | 68, 74, 266, 267, 536, 559, 614 |
| BcoDI | GTCTC | 2 cut(s) | 196, 447 |
| BfmI | CTRYAG | 2 cut(s) | 125, 318 |
| BfoI | RGCGCY | 2 cut(s) | 620, 766 |
| BfuI | GTATCC | 1 cut(s) | 961 |
| Bme1390I | CCNGG | 7 cut(s) | 68, 74, 266, 267, 536, 559, 614 |
| Bme18I | GGWCC | 4 cut(s) | 70, 103, 175, 269 |
| BmeT110I | CYCGRG | 3 cut(s) | 265, 506, 787 |
| BmgT120I | GGNCC | 4 cut(s) | 70, 103, 175, 269 |
| BmiI | GGNNCC | 6 cut(s) | 72, 238, 270, 271, 491, 1003 |
| BmrFI | CCNGG | 7 cut(s) | 68, 74, 266, 267, 536, 559, 614 |
| BmsI | GCATC | 2 cut(s) | 284, 459 |
| BpiI | GAAGAC | 2 cut(s) | 69, 560 |
| BpuMI | CCSGG | 7 cut(s) | 68, 74, 266, 267, 536, 559, 614 |
| Bsa29I | ATCGAT | 1 cut(s) | 146 |
| BsaAI | YACGTR | 2 cut(s) | 604, 771 |
| BsaHI | GRCGYC | 2 cut(s) | 503, 926 |
| BsaI | GGTCTC | 1 cut(s) | 196 |
| BsaJI | CCNNGG | 4 cut(s) | 33, 265, 507, 513 |
| BsaWI | WCCGGW | 3 cut(s) | 11, 87, 492 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 69, 99 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 73, 578, 579, 595, 1011 |
| Bse118I | RCCGGY | 3 cut(s) | 11, 492, 838 |
| BseAI | TCCGGA | 1 cut(s) | 87 |
| BseCI | ATCGAT | 1 cut(s) | 146 |
| BseDI | CCNNGG | 4 cut(s) | 33, 265, 507, 513 |
| BseGI | GGATG | 6 cut(s) | 27, 275, 414, 474, 895, 901 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 73, 578, 579, 595, 1011 |
| BseMII | CTCAG | 3 cut(s) | 207, 272, 972 |
| BseRI | GAGGAG | 2 cut(s) | 914, 929 |
| BseSI | GKGCMC | 4 cut(s) | 572, 603, 813, 834 |
| BseX3I | CGGCCG | 1 cut(s) | 537 |
| BseXI | GCAGC | 5 cut(s) | 111, 387, 677, 752, 856 |
| BsgI | GTGCAG | 1 cut(s) | 751 |
| Bsh1236I | CGCG | 6 cut(s) | 35, 50, 219, 392, 458, 757 |
| Bsh1285I | CGRYCG | 2 cut(s) | 540, 714 |
| BshFI | GGCC | 5 cut(s) | 251, 512, 518, 539, 818 |
| BshNI | GGYRCC | 1 cut(s) | 236 |
| BshTI | ACCGGT | 2 cut(s) | 11, 492 |
| BshVI | ATCGAT | 1 cut(s) | 146 |
| BsiEI | CGRYCG | 2 cut(s) | 540, 714 |
| BsiHKAI | GWGCWC | 1 cut(s) | 414 |
| BsiHKCI | CYCGRG | 3 cut(s) | 265, 506, 787 |
| BslFI | GGGAC | 1 cut(s) | 282 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 73, 578, 579, 595, 1011 |
| BsmAI | GTCTC | 2 cut(s) | 196, 447 |
| BsmBI | CGTCTC | 1 cut(s) | 447 |
| BsmFI | GGGAC | 1 cut(s) | 282 |
| BsnI | GGCC | 5 cut(s) | 251, 512, 518, 539, 818 |
| Bso31I | GGTCTC | 1 cut(s) | 196 |
| BsoBI | CYCGRG | 3 cut(s) | 265, 506, 787 |
| Bsp1286I | GDGCHC | 6 cut(s) | 414, 484, 572, 603, 813, 834 |
| Bsp13I | TCCGGA | 1 cut(s) | 87 |
| Bsp143I | GATC | 6 cut(s) | 147, 165, 213, 375, 630, 883 |
| BspANI | GGCC | 5 cut(s) | 251, 512, 518, 539, 818 |
| BspCNI | CTCAG | 3 cut(s) | 206, 271, 973 |
| BspDI | ATCGAT | 1 cut(s) | 146 |
| BspEI | TCCGGA | 1 cut(s) | 87 |
| BspFNI | CGCG | 6 cut(s) | 35, 50, 219, 392, 458, 757 |
| BspLI | GGNNCC | 6 cut(s) | 72, 238, 270, 271, 491, 1003 |
| BspMAI | CTGCAG | 1 cut(s) | 129 |
| BspPI | GGATC | 2 cut(s) | 208, 891 |
| BspQI | GCTCTTC | 3 cut(s) | 695, 722, 788 |
| BspT107I | GGYRCC | 1 cut(s) | 236 |
| BspTNI | GGTCTC | 1 cut(s) | 196 |
| BsrBI | CCGCTC | 1 cut(s) | 85 |
| BsrFI | RCCGGY | 3 cut(s) | 11, 492, 838 |
| BssAI | RCCGGY | 3 cut(s) | 11, 492, 838 |
| BssECI | CCNNGG | 4 cut(s) | 33, 265, 507, 513 |
| BssMI | GATC | 6 cut(s) | 147, 165, 213, 375, 630, 883 |
| BssNI | GRCGYC | 2 cut(s) | 503, 926 |
| BssSI | CACGAG | 3 cut(s) | 565, 679, 778 |
| BssT1I | CCWWGG | 1 cut(s) | 513 |
| Bst2BI | CACGAG | 3 cut(s) | 565, 679, 778 |
| Bst4CI | ACNGT | 2 cut(s) | 21, 236 |
| Bst6I | CTCTTC | 6 cut(s) | 333, 695, 722, 788, 851, 900 |
| BstACI | GRCGYC | 2 cut(s) | 503, 926 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 690 |
| BstBAI | YACGTR | 2 cut(s) | 604, 771 |
| BstC8I | GCNNGC | 5 cut(s) | 253, 405, 480, 800, 840 |
| BstDEI | CTNAG | 3 cut(s) | 193, 258, 981 |
| BstDSI | CCRYGG | 1 cut(s) | 33 |
| BstF5I | GGATG | 6 cut(s) | 27, 275, 414, 474, 895, 901 |
| BstFNI | CGCG | 6 cut(s) | 35, 50, 219, 392, 458, 757 |
| BstH2I | RGCGCY | 2 cut(s) | 620, 766 |
| BstHHI | GCGC | 4 cut(s) | 52, 619, 757, 765 |
| BstKTI | GATC | 6 cut(s) | 150, 168, 216, 378, 633, 886 |
| BstMAI | GTCTC | 2 cut(s) | 196, 447 |
| BstMBI | GATC | 6 cut(s) | 147, 165, 213, 375, 630, 883 |
| BstMCI | CGRYCG | 2 cut(s) | 540, 714 |
| BstNSI | RCATGY | 2 cut(s) | 478, 838 |
| BstSCI | CCNGG | 7 cut(s) | 66, 72, 264, 265, 534, 557, 612 |
| BstSFI | CTRYAG | 2 cut(s) | 125, 318 |
| BstSLI | GKGCMC | 4 cut(s) | 572, 603, 813, 834 |
| BstUI | CGCG | 6 cut(s) | 35, 50, 219, 392, 458, 757 |
| BstV1I | GCAGC | 5 cut(s) | 111, 387, 677, 752, 856 |
| BstV2I | GAAGAC | 2 cut(s) | 69, 560 |
| BstZI | CGGCCG | 1 cut(s) | 537 |
| Bsu15I | ATCGAT | 1 cut(s) | 146 |
| BsuI | GTATCC | 1 cut(s) | 961 |
| BsuRI | GGCC | 5 cut(s) | 251, 512, 518, 539, 818 |
| BsuTUI | ATCGAT | 1 cut(s) | 146 |
| BtgI | CCRYGG | 1 cut(s) | 33 |
| BtgZI | GCGATG | 1 cut(s) | 407 |
| BtsCI | GGATG | 6 cut(s) | 27, 275, 414, 474, 895, 901 |
| BtsI | GCAGTG | 3 cut(s) | 134, 661, 742 |
| BtsIMutI | CAGTG | 3 cut(s) | 134, 661, 742 |
| Cac8I | GCNNGC | 5 cut(s) | 253, 405, 480, 800, 840 |
| CfoI | GCGC | 4 cut(s) | 52, 619, 757, 765 |
| Cfr10I | RCCGGY | 3 cut(s) | 11, 492, 838 |
| Cfr13I | GGNCC | 4 cut(s) | 70, 103, 175, 269 |
| Cfr42I | CCGCGG | 1 cut(s) | 36 |
| Cfr9I | CCCGGG | 1 cut(s) | 265 |
| ClaI | ATCGAT | 1 cut(s) | 146 |
| CseI | GACGC | 4 cut(s) | 371, 398, 464, 511 |
| Csp6I | GTAC | 1 cut(s) | 676 |
| CspAI | ACCGGT | 2 cut(s) | 11, 492 |
| CviAII | CATG | 4 cut(s) | 187, 475, 814, 835 |
| CviQI | GTAC | 1 cut(s) | 676 |
| DdeI | CTNAG | 3 cut(s) | 193, 258, 981 |
| DpnI | GATC | 6 cut(s) | 149, 167, 215, 377, 632, 885 |
| DpnII | GATC | 6 cut(s) | 147, 165, 213, 375, 630, 883 |
| EaeI | YGGCCR | 2 cut(s) | 516, 537 |
| EagI | CGGCCG | 1 cut(s) | 537 |
| Eam1104I | CTCTTC | 6 cut(s) | 333, 695, 722, 788, 851, 900 |
| EarI | CTCTTC | 6 cut(s) | 333, 695, 722, 788, 851, 900 |
| EciI | GGCGGA | 2 cut(s) | 422, 734 |
| EclXI | CGGCCG | 1 cut(s) | 537 |
| Eco130I | CCWWGG | 1 cut(s) | 513 |
| Eco147I | AGGCCT | 1 cut(s) | 512 |
| Eco24I | GRGCYC | 1 cut(s) | 484 |
| Eco31I | GGTCTC | 1 cut(s) | 196 |
| Eco47I | GGWCC | 4 cut(s) | 70, 103, 175, 269 |
| Eco52I | CGGCCG | 1 cut(s) | 537 |
| Eco57I | CTGAAG | 2 cut(s) | 81, 758 |
| Eco72I | CACGTG | 2 cut(s) | 604, 771 |
| Eco88I | CYCGRG | 3 cut(s) | 265, 506, 787 |
| EcoO109I | RGGNCCY | 1 cut(s) | 269 |
| EcoT14I | CCWWGG | 1 cut(s) | 513 |
| EcoT38I | GRGCYC | 1 cut(s) | 484 |
| ErhI | CCWWGG | 1 cut(s) | 513 |
| Esp3I | CGTCTC | 1 cut(s) | 447 |
| FaeI | CATG | 4 cut(s) | 190, 478, 817, 838 |
| FaiI | YATR | 7 cut(s) | 188, 476, 576, 815, 836, 881, 1031 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 632, 664, 689, 721 |
| FaqI | GGGAC | 1 cut(s) | 282 |
| FatI | CATG | 4 cut(s) | 186, 474, 813, 834 |
| FauI | CCCGC | 5 cut(s) | 40, 280, 304, 428, 471 |
| FbaI | TGATCA | 1 cut(s) | 165 |
| FokI | GGATG | 6 cut(s) | 14, 262, 401, 481, 902, 908 |
| FriOI | GRGCYC | 1 cut(s) | 484 |
| GlaI | GCGC | 4 cut(s) | 51, 618, 756, 764 |
| HaeII | RGCGCY | 2 cut(s) | 620, 766 |
| HaeIII | GGCC | 5 cut(s) | 251, 512, 518, 539, 818 |
| HgaI | GACGC | 4 cut(s) | 371, 398, 464, 511 |
| HhaI | GCGC | 4 cut(s) | 52, 619, 757, 765 |
| Hin1I | GRCGYC | 2 cut(s) | 503, 926 |
| Hin1II | CATG | 4 cut(s) | 190, 478, 817, 838 |
| Hin6I | GCGC | 4 cut(s) | 50, 617, 755, 763 |
| HinP1I | GCGC | 4 cut(s) | 50, 617, 755, 763 |
| HincII | GTYRAC | 1 cut(s) | 17 |
| HindII | GTYRAC | 1 cut(s) | 17 |
| HinfI | GANTC | 4 cut(s) | 91, 143, 201, 643 |
| HphI | GGTGA | 2 cut(s) | 130, 640 |
| Hpy166II | GTNNAC | 4 cut(s) | 9, 17, 388, 1039 |
| Hpy188I | TCNGA | 5 cut(s) | 107, 165, 261, 280, 982 |
| Hpy188III | TCNNGA | 5 cut(s) | 88, 328, 499, 787, 887 |
| Hpy8I | GTNNAC | 4 cut(s) | 9, 17, 388, 1039 |
| Hpy99I | CGWCG | 6 cut(s) | 50, 362, 365, 877, 928, 931 |
| HpyAV | CCTTC | 3 cut(s) | 433, 821, 929 |
| HpyCH4III | ACNGT | 2 cut(s) | 21, 236 |
| HpyCH4IV | ACGT | 3 cut(s) | 603, 770, 926 |
| HpyCH4V | TGCA | 6 cut(s) | 127, 472, 585, 684, 693, 768 |
| HpyF3I | CTNAG | 3 cut(s) | 193, 258, 981 |
| HpySE526I | ACGT | 3 cut(s) | 603, 770, 926 |
| Hsp92I | GRCGYC | 2 cut(s) | 503, 926 |
| Hsp92II | CATG | 4 cut(s) | 190, 478, 817, 838 |
| HspAI | GCGC | 4 cut(s) | 50, 617, 755, 763 |
| KflI | GGGWCCC | 1 cut(s) | 269 |
| Kpn2I | TCCGGA | 1 cut(s) | 87 |
| KroI | GCCGGC | 1 cut(s) | 838 |
| KroNI | GCCGGC | 1 cut(s) | 840 |
| Ksp22I | TGATCA | 1 cut(s) | 165 |
| KspI | CCGCGG | 1 cut(s) | 36 |
| Kzo9I | GATC | 6 cut(s) | 147, 165, 213, 375, 630, 883 |
| LguI | GCTCTTC | 3 cut(s) | 695, 722, 788 |
| LmnI | GCTCC | 3 cut(s) | 90, 397, 409 |
| Lsp1109I | GCAGC | 5 cut(s) | 111, 387, 677, 752, 856 |
| LweI | GCATC | 2 cut(s) | 284, 459 |
| MaeII | ACGT | 3 cut(s) | 603, 770, 926 |
| MalI | GATC | 6 cut(s) | 149, 167, 215, 377, 632, 885 |
| MbiI | CCGCTC | 1 cut(s) | 85 |
| MboI | GATC | 6 cut(s) | 147, 165, 213, 375, 630, 883 |
| MhlI | GDGCHC | 6 cut(s) | 414, 484, 572, 603, 813, 834 |
| MlsI | TGGCCA | 1 cut(s) | 518 |
| MluCI | AATT | 3 cut(s) | 460, 955, 974 |
| MluNI | TGGCCA | 1 cut(s) | 518 |
| MmeI | TCCRAC | 1 cut(s) | 303 |
| Mox20I | TGGCCA | 1 cut(s) | 518 |
| MroI | TCCGGA | 1 cut(s) | 87 |
| MroNI | GCCGGC | 1 cut(s) | 838 |
| MroXI | GAANNNNTTC | 4 cut(s) | 347, 443, 494, 647 |
| MscI | TGGCCA | 1 cut(s) | 518 |
| MseI | TTAA | 2 cut(s) | 23, 864 |
| Msp20I | TGGCCA | 1 cut(s) | 518 |
| MspA1I | CMGCKG | 1 cut(s) | 35 |
| MspR9I | CCNGG | 7 cut(s) | 68, 74, 266, 267, 536, 559, 614 |
| MvnI | CGCG | 6 cut(s) | 35, 50, 219, 392, 458, 757 |
| NaeI | GCCGGC | 1 cut(s) | 840 |
| NciI | CCSGG | 7 cut(s) | 68, 74, 266, 267, 536, 559, 614 |
| NdeII | GATC | 6 cut(s) | 147, 165, 213, 375, 630, 883 |
| NgoMIV | GCCGGC | 1 cut(s) | 838 |
| NlaIII | CATG | 4 cut(s) | 190, 478, 817, 838 |
| NlaIV | GGNNCC | 6 cut(s) | 72, 238, 270, 271, 491, 1003 |
| NmeAIII | GCCGAG | 2 cut(s) | 565, 570 |
| NspI | RCATGY | 2 cut(s) | 478, 838 |
| PaeR7I | CTCGAG | 1 cut(s) | 787 |
| PceI | AGGCCT | 1 cut(s) | 512 |
| PciSI | GCTCTTC | 3 cut(s) | 695, 722, 788 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 369, 776, 785 |
| PdiI | GCCGGC | 1 cut(s) | 840 |
| PdmI | GAANNNNTTC | 4 cut(s) | 347, 443, 494, 647 |
| PfeI | GAWTC | 4 cut(s) | 91, 143, 201, 643 |
| PflFI | GACNNNGTC | 1 cut(s) | 188 |
| PinAI | ACCGGT | 2 cut(s) | 11, 492 |
| PmaCI | CACGTG | 2 cut(s) | 604, 771 |
| PmlI | CACGTG | 2 cut(s) | 604, 771 |
| Ppu21I | YACGTR | 2 cut(s) | 604, 771 |
| PpuMI | RGGWCCY | 1 cut(s) | 269 |
| Psp5II | RGGWCCY | 1 cut(s) | 269 |
| PspCI | CACGTG | 2 cut(s) | 604, 771 |
| PspN4I | GGNNCC | 6 cut(s) | 72, 238, 270, 271, 491, 1003 |
| PspPI | GGNCC | 4 cut(s) | 70, 103, 175, 269 |
| PspPPI | RGGWCCY | 1 cut(s) | 269 |
| PstI | CTGCAG | 1 cut(s) | 129 |
| PsyI | GACNNNGTC | 1 cut(s) | 188 |
| RsaI | GTAC | 1 cut(s) | 677 |
| RsaNI | GTAC | 1 cut(s) | 676 |
| SacII | CCGCGG | 1 cut(s) | 36 |
| SapI | GCTCTTC | 3 cut(s) | 695, 722, 788 |
| SaqAI | TTAA | 2 cut(s) | 23, 864 |
| Sau3AI | GATC | 6 cut(s) | 147, 165, 213, 375, 630, 883 |
| Sau96I | GGNCC | 4 cut(s) | 70, 103, 175, 269 |
| ScrFI | CCNGG | 7 cut(s) | 68, 74, 266, 267, 536, 559, 614 |
| SduI | GDGCHC | 6 cut(s) | 414, 484, 572, 603, 813, 834 |
| SfaNI | GCATC | 2 cut(s) | 284, 459 |
| SfcI | CTRYAG | 2 cut(s) | 125, 318 |
| Sfr274I | CTCGAG | 1 cut(s) | 787 |
| Sfr303I | CCGCGG | 1 cut(s) | 36 |
| SgrBI | CCGCGG | 1 cut(s) | 36 |
| SinI | GGWCC | 4 cut(s) | 70, 103, 175, 269 |
| SlaI | CTCGAG | 1 cut(s) | 787 |
| SmaI | CCCGGG | 1 cut(s) | 267 |
| SmlI | CTYRAG | 1 cut(s) | 787 |
| SmoI | CTYRAG | 1 cut(s) | 787 |
| Sse9I | AATT | 3 cut(s) | 460, 955, 974 |
| SseBI | AGGCCT | 1 cut(s) | 512 |
| StuI | AGGCCT | 1 cut(s) | 512 |
| StyD4I | CCNGG | 7 cut(s) | 66, 72, 264, 265, 534, 557, 612 |
| StyI | CCWWGG | 1 cut(s) | 513 |
| TaaI | ACNGT | 2 cut(s) | 21, 236 |
| TaiI | ACGT | 3 cut(s) | 606, 773, 929 |
| TaqI | TCGA | 4 cut(s) | 98, 146, 788, 953 |
| TaqII | GACCGA | 1 cut(s) | 700 |
| TasI | AATT | 3 cut(s) | 460, 955, 974 |
| TatI | WGTACW | 1 cut(s) | 675 |
| TauI | GCSGC | 5 cut(s) | 38, 242, 302, 750, 777 |
| TfiI | GAWTC | 4 cut(s) | 91, 143, 201, 643 |
| Tru1I | TTAA | 2 cut(s) | 23, 864 |
| Tru9I | TTAA | 2 cut(s) | 23, 864 |
| TscAI | CASTG | 3 cut(s) | 134, 668, 749 |
| TseI | GCWGC | 5 cut(s) | 124, 400, 690, 765, 869 |
| TspGWI | ACGGA | 1 cut(s) | 34 |
| TspMI | CCCGGG | 1 cut(s) | 265 |
| TspRI | CASTG | 3 cut(s) | 134, 668, 749 |
| Tth111I | GACNNNGTC | 1 cut(s) | 188 |
| VpaK11BI | GGWCC | 4 cut(s) | 70, 103, 175, 269 |
| XapI | RAATTY | 3 cut(s) | 460, 955, 974 |
| XceI | RCATGY | 2 cut(s) | 478, 838 |
| XhoI | CTCGAG | 1 cut(s) | 787 |
| XmaI | CCCGGG | 1 cut(s) | 265 |
| XmnI | GAANNNNTTC | 4 cut(s) | 347, 443, 494, 647 |
| ZraI | GACGTC | 1 cut(s) | 927 |