Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0039502.1

Orthogroup ID

OG0015523

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 364

Gene Structure 364 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0039502.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 364 bp

ttgcaacaagaagagtttttcggtggtggcggacttgaagagccacctgaagcactgcggcgaggcgcggtggcggtgcacgtgcggcacgagcttctccaggaagagcaagctgttcgggcacatggcgctgttcgagggccacatgccggccgtggaggacgacaacaagggcgccgcgagttgtttggtcagggctatggaagaggaggaggaggatggagaggaaaggcacagaacggcctcgtggaagggtgagggttcgaggccgatttatgaggacattgatttttcggaggaattgtttagtgggttgggatctattgaagggttttgtttggaggatatgtttgttgatttgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009268 GO:0009628 GO:0009889 GO:0010035 GO:0010038 GO:0010044 GO:0010447 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2 zf-met

Protein Analysis

120

Amino Acids

13.49

Weight (kDa)

4.99

Isoelectric Point (pI)

57.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015523)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20670
malus_domestica	MD01G1032000.v1.1 MD15G1323400.v1.1
prunus_persica	Prupe.6G188400_v2.0.a1
pyrus_communis	pycom01g05930
rosa_chinensis	RchiOBHm_Chr2g0113111
rosa_laevigata	RLG00000018044
rosa_multiflora	Rmu_sc0005949.1_g000014 Rmu_sc0039502.1_g000001
rosa_roxburghii	Rroxscaffold_2G00129630 Rroxscaffold_2G00129700
rosa_rugosa	Rorug02G0185300
rosa_samantha	Rh2AG239700 Rh2CG243800 Rh2DG247600
rosa_wichuraiana	Rw2G018760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	174
AccII	CGCG	2 cut(s)	68, 180
AciI	CCGC	6 cut(s)	30, 58, 68, 74, 85, 178
AclWI	GGATC	1 cut(s)	326
AcoI	YGGCCR	1 cut(s)	151
AcuI	CTGAAG	1 cut(s)	69
AcvI	CACGTG	1 cut(s)	82
AcyI	GRCGYC	1 cut(s)	175
AfiI	CCNNNNNNNGG	1 cut(s)	149
AgsI	TTSAA	2 cut(s)	38, 327
AjnI	CCWGG	1 cut(s)	99
AluBI	AGCT	2 cut(s)	94, 113
AluI	AGCT	2 cut(s)	94, 113
Alw21I	GWGCWC	1 cut(s)	81
Alw44I	GTGCAC	1 cut(s)	77
AlwI	GGATC	1 cut(s)	326
AoxI	GGCC	4 cut(s)	140, 151, 241, 267
ApaLI	GTGCAC	1 cut(s)	77
AspLEI	GCGC	3 cut(s)	68, 131, 177
AspS9I	GGNCC	1 cut(s)	140
AsuHPI	GGTGA	1 cut(s)	267
BaeGI	GKGCMC	2 cut(s)	81, 124
BanI	GGYRCC	1 cut(s)	174
BauI	CACGAG	2 cut(s)	89, 245
BbrPI	CACGTG	1 cut(s)	82
Bbv12I	GWGCWC	1 cut(s)	81
BccI	CCATC	1 cut(s)	213
BceAI	ACGGC	2 cut(s)	138, 256
BcgI	CGANNNNNNTGC	2 cut(s)	98, 132
BciT130I	CCWGG	1 cut(s)	101
BfoI	RGCGCY	2 cut(s)	132, 178
BisI	GCNGC	3 cut(s)	59, 86, 178
BlsI	GCNGC	3 cut(s)	60, 87, 179
Bme1390I	CCNGG	1 cut(s)	101
BmgT120I	GGNCC	1 cut(s)	140
BmiI	GGNNCC	1 cut(s)	176
BmrFI	CCNGG	1 cut(s)	101
BpmI	CTGGAG	1 cut(s)	83
BsaAI	YACGTR	1 cut(s)	82
BsaHI	GRCGYC	1 cut(s)	175
BsaJI	CCNNGG	1 cut(s)	154
BsaXI	ACNNNNNCTCC	4 cut(s)	288, 318, 333, 363
Bsc4I	CCNNNNNNNGG	1 cut(s)	149
Bse118I	RCCGGY	1 cut(s)	149
BseBI	CCWGG	1 cut(s)	101
BseDI	CCNNGG	1 cut(s)	154
BseGI	GGATG	1 cut(s)	224
BseLI	CCNNNNNNNGG	1 cut(s)	149
BseRI	GAGGAG	3 cut(s)	222, 225, 228
BseSI	GKGCMC	2 cut(s)	81, 124
BseX3I	CGGCCG	1 cut(s)	151
Bsh1236I	CGCG	2 cut(s)	68, 180
Bsh1285I	CGRYCG	1 cut(s)	154
BshFI	GGCC	4 cut(s)	142, 153, 243, 269
BshNI	GGYRCC	1 cut(s)	174
BsiEI	CGRYCG	1 cut(s)	154
BsiHKAI	GWGCWC	1 cut(s)	81
BsiSI	CCGG	1 cut(s)	150
BslI	CCNNNNNNNGG	1 cut(s)	149
BsnI	GGCC	4 cut(s)	142, 153, 243, 269
Bsp1286I	GDGCHC	2 cut(s)	81, 124
Bsp143I	GATC	1 cut(s)	318
BspACI	CCGC	6 cut(s)	30, 58, 68, 74, 85, 178
BspANI	GGCC	4 cut(s)	142, 153, 243, 269
BspFNI	CGCG	2 cut(s)	68, 180
BspLI	GGNNCC	1 cut(s)	176
BspPI	GGATC	1 cut(s)	326
BspQI	GCTCTTC	2 cut(s)	33, 99
BspT107I	GGYRCC	1 cut(s)	174
BsrFI	RCCGGY	1 cut(s)	149
BssAI	RCCGGY	1 cut(s)	149
BssECI	CCNNGG	1 cut(s)	154
BssMI	GATC	1 cut(s)	318
BssNI	GRCGYC	1 cut(s)	175
BssSI	CACGAG	2 cut(s)	89, 245
Bst2BI	CACGAG	2 cut(s)	89, 245
Bst2UI	CCWGG	1 cut(s)	101
Bst6I	CTCTTC	4 cut(s)	6, 33, 99, 199
BstACI	GRCGYC	1 cut(s)	175
BstBAI	YACGTR	1 cut(s)	82
BstC8I	GCNNGC	2 cut(s)	111, 151
BstDSI	CCRYGG	1 cut(s)	154
BstF5I	GGATG	1 cut(s)	224
BstFNI	CGCG	2 cut(s)	68, 180
BstH2I	RGCGCY	2 cut(s)	132, 178
BstHHI	GCGC	3 cut(s)	68, 131, 177
BstKTI	GATC	1 cut(s)	321
BstMBI	GATC	1 cut(s)	318
BstMCI	CGRYCG	1 cut(s)	154
BstMWI	GCNNNNNNNGC	4 cut(s)	85, 91, 119, 128
BstNI	CCWGG	1 cut(s)	101
BstNSI	RCATGY	1 cut(s)	149
BstSCI	CCNGG	1 cut(s)	99
BstSLI	GKGCMC	2 cut(s)	81, 124
BstUI	CGCG	2 cut(s)	68, 180
BstX2I	RGATCY	1 cut(s)	318
BstYI	RGATCY	1 cut(s)	318
BstZI	CGGCCG	1 cut(s)	151
BsuRI	GGCC	4 cut(s)	142, 153, 243, 269
BtgI	CCRYGG	1 cut(s)	154
BtsCI	GGATG	1 cut(s)	224
BtsI	GCAGTG	1 cut(s)	53
BtsIMutI	CAGTG	1 cut(s)	53
Cac8I	GCNNGC	2 cut(s)	111, 151
CfoI	GCGC	3 cut(s)	68, 131, 177
Cfr10I	RCCGGY	1 cut(s)	149
Cfr13I	GGNCC	1 cut(s)	140
CviAII	CATG	2 cut(s)	125, 146
CviJI	RGCY	8 cut(s)	43, 94, 113, 142, 153, 198, 243, 269
CviKI_1	RGCY	8 cut(s)	43, 94, 113, 142, 153, 198, 243, 269
DinI	GGCGCC	1 cut(s)	176
DpnI	GATC	1 cut(s)	320
DpnII	GATC	1 cut(s)	318
EaeI	YGGCCR	1 cut(s)	151
EagI	CGGCCG	1 cut(s)	151
Eam1104I	CTCTTC	4 cut(s)	6, 33, 99, 199
EarI	CTCTTC	4 cut(s)	6, 33, 99, 199
EciI	GGCGGA	1 cut(s)	45
EclXI	CGGCCG	1 cut(s)	151
Eco52I	CGGCCG	1 cut(s)	151
Eco57I	CTGAAG	1 cut(s)	69
Eco72I	CACGTG	1 cut(s)	82
EcoRII	CCWGG	1 cut(s)	99
EgeI	GGCGCC	1 cut(s)	176
EheI	GGCGCC	1 cut(s)	176
FaeI	CATG	2 cut(s)	128, 149
FaiI	YATR	5 cut(s)	126, 147, 201, 277, 348
FatI	CATG	2 cut(s)	124, 145
Fnu4HI	GCNGC	3 cut(s)	59, 86, 178
FokI	GGATG	1 cut(s)	231
Fsp4HI	GCNGC	3 cut(s)	59, 86, 178
GlaI	GCGC	3 cut(s)	67, 130, 176
GluI	GCNGC	3 cut(s)	59, 86, 178
GsuI	CTGGAG	1 cut(s)	83
HaeII	RGCGCY	2 cut(s)	132, 178
HaeIII	GGCC	4 cut(s)	142, 153, 243, 269
HapII	CCGG	1 cut(s)	150
HhaI	GCGC	3 cut(s)	68, 131, 177
Hin1I	GRCGYC	1 cut(s)	175
Hin1II	CATG	2 cut(s)	128, 149
Hin6I	GCGC	3 cut(s)	66, 129, 175
HinP1I	GCGC	3 cut(s)	66, 129, 175
HpaII	CCGG	1 cut(s)	150
HphI	GGTGA	1 cut(s)	267
Hpy166II	GTNNAC	1 cut(s)	79
Hpy188I	TCNGA	1 cut(s)	296
Hpy8I	GTNNAC	1 cut(s)	79
HpyAV	CCTTC	2 cut(s)	245, 321
HpyCH4IV	ACGT	1 cut(s)	81
HpyCH4V	TGCA	2 cut(s)	4, 79
HpyF10VI	GCNNNNNNNGC	4 cut(s)	85, 91, 119, 128
HpySE526I	ACGT	1 cut(s)	81
Hsp92I	GRCGYC	1 cut(s)	175
Hsp92II	CATG	2 cut(s)	128, 149
HspAI	GCGC	3 cut(s)	66, 129, 175
KasI	GGCGCC	1 cut(s)	174
KroI	GCCGGC	1 cut(s)	149
KroNI	GCCGGC	1 cut(s)	151
Kzo9I	GATC	1 cut(s)	318
LguI	GCTCTTC	2 cut(s)	33, 99
LpnPI	CCDG	5 cut(s)	60, 86, 113, 163, 179
MaeII	ACGT	1 cut(s)	81
MalI	GATC	1 cut(s)	320
MboI	GATC	1 cut(s)	318
MboII	GAAGA	4 cut(s)	23, 50, 116, 216
MflI	RGATCY	1 cut(s)	318
MhlI	GDGCHC	2 cut(s)	81, 124
MluCI	AATT	1 cut(s)	300
Mly113I	GGCGCC	1 cut(s)	175
MroNI	GCCGGC	1 cut(s)	149
MspI	CCGG	1 cut(s)	150
MspR9I	CCNGG	1 cut(s)	101
MvaI	CCWGG	1 cut(s)	101
MvnI	CGCG	2 cut(s)	68, 180
MwoI	GCNNNNNNNGC	4 cut(s)	85, 91, 119, 128
NaeI	GCCGGC	1 cut(s)	151
NarI	GGCGCC	1 cut(s)	175
NdeII	GATC	1 cut(s)	318
NgoMIV	GCCGGC	1 cut(s)	149
NlaIII	CATG	2 cut(s)	128, 149
NlaIV	GGNNCC	1 cut(s)	176
NspI	RCATGY	1 cut(s)	149
PciSI	GCTCTTC	2 cut(s)	33, 99
PcsI	WCGNNNNNNNCGW	1 cut(s)	87
PdiI	GCCGGC	1 cut(s)	151
PfoI	TCCNGGA	1 cut(s)	99
PkrI	GCNGC	3 cut(s)	60, 87, 179
PluTI	GGCGCC	1 cut(s)	178
PmaCI	CACGTG	1 cut(s)	82
PmlI	CACGTG	1 cut(s)	82
Ppu21I	YACGTR	1 cut(s)	82
Psp6I	CCWGG	1 cut(s)	99
PspCI	CACGTG	1 cut(s)	82
PspGI	CCWGG	1 cut(s)	99
PspN4I	GGNNCC	1 cut(s)	176
PspPI	GGNCC	1 cut(s)	140
PsuI	RGATCY	1 cut(s)	318
SapI	GCTCTTC	2 cut(s)	33, 99
SatI	GCNGC	3 cut(s)	59, 86, 178
Sau3AI	GATC	1 cut(s)	318
Sau96I	GGNCC	1 cut(s)	140
ScrFI	CCNGG	1 cut(s)	101
SduI	GDGCHC	2 cut(s)	81, 124
SetI	ASST	4 cut(s)	49, 84, 96, 115
SfoI	GGCGCC	1 cut(s)	176
Sse9I	AATT	1 cut(s)	300
SsiI	CCGC	6 cut(s)	30, 58, 68, 74, 85, 178
SspDI	GGCGCC	1 cut(s)	174
StyD4I	CCNGG	1 cut(s)	99
TaiI	ACGT	1 cut(s)	84
TaqI	TCGA	2 cut(s)	136, 264
TasI	AATT	1 cut(s)	300
TauI	GCSGC	3 cut(s)	61, 88, 180
TscAI	CASTG	1 cut(s)	60
TspRI	CASTG	1 cut(s)	60
VneI	GTGCAC	1 cut(s)	77
XceI	RCATGY	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.