Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0015523

Physical Location & Seq

Genomic Coordinates Forward (+)

5924285 .. 5925340

Gene Structure 1056 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g05930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGTCGTTTCCAGGTCAACCGTTTCTTACTCCGCCGGAGAACCTCGTCCAGTCTACGAATGAGGGTCCAGCAGCCCCGCTCCGCAATCTCTCGATGGTCCGAACAAGAATGGATTCGCTGCAAAGCTTCCTCACCGAATCAATCCACGCCAACGCTCTAATCAGCAAGGACCAGATGGACATGGTCTCCTCCGGCATCGCTTCCGCCATCCACGAAATCATCTCAAACGGTGCCGCTCTGTTGGCTTTCTCTCAGAACCCGATACCCTCATCGGACCCGACCCGAACACACTCCGCTAAAATCGAGGCTTCCGAGGTCAAGAAAGAGATGGAAGTGAACGATTGCGGAAAGGATGACGCAGATGGCGGCGAGATTGTGGAGGTGGACGCGATGGAGCTGCTGGCGGAGCACATCCATTATTGCGAGATTTGCGGGAAGGGTTTCAAGCGAGATGCGAATTTGAGAATGCACATGCGGGCCCACGGGAACCGGTTCAAGACCCCCGAGGCGTTGACCAAACCGGATAAGACCCCGGCCGAGTTGAGCAGGAATTCCCGGTTCTCGTGCCCGTACGTCGGGTGCAACCGGAACAAAGCGCACGGGAAGTTCCGGCCGTTGAAGTCGGTGATTTGCGTGAAGAATCATTTCAAGAGGAGCCACTGCCCAAAAATGTACTCGTGCAACCGGTGCAACAAGAGGAGCTTCTCAGTGGTGGCGGATTTAAAGAGCCACTTGAAGCACTGCGGCGAGGCTAGGTGGCGGTGCACCTGCGGCACGAGCTTCTCGAGGAAGAGCAAGCTGTTCGGGCACATGGCGCTGTTCGAAGGGCACATGCCGGCGGTAGAGGACGAGAAGAGTAGTGGTGGGAGTAAGGTTGTGACAGCTATGGAGCAGGATGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGCATGACGACGTTGGCGAAGGGAATTCCGAATATATACGAGGATATTGAGTTTTCTGATGAGTTGCTTGATGGGTTTGGGTCGATTGATGACTATTTTTGGAAGGATATGTTGACTGATTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009268 GO:0009628 GO:0009889 GO:0010035 GO:0010038 GO:0010044 GO:0010447 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2 zf-met

Protein Analysis

352

Amino Acids

39.19

Weight (kDa)

5.65

Isoelectric Point (pI)

55.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C2H2_STOP2_3rd	PF23115	187 - 221	3.5e-19	STOP2-like, C2H2-type zinc finger
zf-C2H2_STOP2_C	PF23118	252 - 281	1.9e-15	STOP2-like, C2H2-type zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015523)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20670
malus_domestica	MD01G1032000.v1.1 MD15G1323400.v1.1
prunus_persica	Prupe.6G188400_v2.0.a1
pyrus_communis	pycom01g05930
rosa_chinensis	RchiOBHm_Chr2g0113111
rosa_laevigata	RLG00000018044
rosa_multiflora	Rmu_sc0005949.1_g000014 Rmu_sc0039502.1_g000001
rosa_roxburghii	Rroxscaffold_2G00129630 Rroxscaffold_2G00129700
rosa_rugosa	Rorug02G0185300
rosa_samantha	Rh2AG239700 Rh2CG243800 Rh2DG247600
rosa_wichuraiana	Rw2G018760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	776
Acc36I	ACCTGC	1 cut(s)	776
AccB1I	GGYRCC	1 cut(s)	230
AccBSI	CCGCTC	2 cut(s)	79, 236
AccI	GTMKAC	1 cut(s)	53
AccII	CGCG	1 cut(s)	389
AcoI	YGGCCR	2 cut(s)	534, 611
AcsI	RAATTY	3 cut(s)	457, 550, 954
AfaI	GTAC	2 cut(s)	572, 674
AfiI	CCNNNNNNNGG	1 cut(s)	575
AgeI	ACCGGT	2 cut(s)	489, 684
AgsI	TTSAA	5 cut(s)	445, 496, 619, 649, 736
AjnI	CCWGG	1 cut(s)	10
AluBI	AGCT	6 cut(s)	126, 397, 702, 780, 799, 884
AluI	AGCT	6 cut(s)	126, 397, 702, 780, 799, 884
Alw21I	GWGCWC	2 cut(s)	411, 767
Alw26I	GTCTC	1 cut(s)	190
Alw44I	GTGCAC	1 cut(s)	763
Ama87I	CYCGRG	2 cut(s)	503, 784
AoxI	GGCC	3 cut(s)	477, 534, 611
ApaI	GGGCCC	1 cut(s)	481
ApaLI	GTGCAC	1 cut(s)	763
ApeKI	GCWGC	3 cut(s)	71, 118, 397
ApoI	RAATTY	3 cut(s)	457, 550, 954
AsiGI	ACCGGT	2 cut(s)	489, 684
Asp700I	GAANNNNTTC	4 cut(s)	112, 440, 491, 644
AspLEI	GCGC	2 cut(s)	598, 817
AspS9I	GGNCC	6 cut(s)	65, 97, 169, 274, 477, 478
AsuC2I	CCSGG	2 cut(s)	533, 556
AsuHPI	GGTGA	2 cut(s)	124, 637
AsuII	TTCGAA	1 cut(s)	822
AvaI	CYCGRG	2 cut(s)	503, 784
AvaII	GGWCC	4 cut(s)	65, 97, 169, 274
BaeGI	GKGCMC	5 cut(s)	481, 569, 767, 810, 831
BanI	GGYRCC	1 cut(s)	230
BanII	GRGCYC	1 cut(s)	481
BauI	CACGAG	3 cut(s)	562, 676, 775
Bbv12I	GWGCWC	2 cut(s)	411, 767
BbvI	GCAGC	3 cut(s)	83, 105, 384
BccI	CCATC	7 cut(s)	88, 169, 215, 322, 356, 385, 995
BceAI	ACGGC	1 cut(s)	598
BcgI	CGANNNNNNTGC	4 cut(s)	379, 413, 784, 818
BciT130I	CCWGG	1 cut(s)	12
BcnI	CCSGG	2 cut(s)	533, 556
BcoDI	GTCTC	1 cut(s)	190
BfaI	CTAG	1 cut(s)	753
BfoI	RGCGCY	1 cut(s)	818
BfuAI	ACCTGC	1 cut(s)	776
BisI	GCNGC	7 cut(s)	72, 119, 234, 367, 398, 745, 772
BlsI	GCNGC	7 cut(s)	73, 120, 235, 368, 399, 746, 773
Bme1390I	CCNGG	3 cut(s)	12, 533, 556
Bme18I	GGWCC	4 cut(s)	65, 97, 169, 274
BmeT110I	CYCGRG	2 cut(s)	503, 784
BmgT120I	GGNCC	6 cut(s)	65, 97, 169, 274, 477, 478
BmiI	GGNNCC	6 cut(s)	66, 232, 276, 479, 488, 656
BmrFI	CCNGG	3 cut(s)	12, 533, 556
BmsI	GCATC	2 cut(s)	204, 442
Bpu14I	TTCGAA	1 cut(s)	822
BpuMI	CCSGG	2 cut(s)	533, 556
BsaI	GGTCTC	1 cut(s)	190
BsaJI	CCNNGG	4 cut(s)	312, 481, 504, 531
BsaWI	WCCGGW	4 cut(s)	489, 520, 585, 684
BsaXI	ACNNNNNCTCC	2 cut(s)	170, 200
Bsc4I	CCNNNNNNNGG	1 cut(s)	575
Bse118I	RCCGGY	3 cut(s)	489, 684, 835
Bse1I	ACTGG	1 cut(s)	49
BseBI	CCWGG	1 cut(s)	12
BseDI	CCNNGG	4 cut(s)	312, 481, 504, 531
BseGI	GGATG	4 cut(s)	207, 358, 411, 901
BseLI	CCNNNNNNNGG	1 cut(s)	575
BseMII	CTCAG	2 cut(s)	266, 720
BseNI	ACTGG	1 cut(s)	49
BseSI	GKGCMC	5 cut(s)	481, 569, 767, 810, 831
BseX3I	CGGCCG	2 cut(s)	534, 611
BseXI	GCAGC	3 cut(s)	83, 105, 384
Bsh1236I	CGCG	1 cut(s)	389
Bsh1285I	CGRYCG	2 cut(s)	537, 614
BshFI	GGCC	3 cut(s)	479, 536, 613
BshNI	GGYRCC	1 cut(s)	230
BshTI	ACCGGT	2 cut(s)	489, 684
BsiEI	CGRYCG	2 cut(s)	537, 614
BsiHKAI	GWGCWC	2 cut(s)	411, 767
BsiHKCI	CYCGRG	2 cut(s)	503, 784
BsiWI	CGTACG	1 cut(s)	570
BslI	CCNNNNNNNGG	1 cut(s)	575
BsmAI	GTCTC	1 cut(s)	190
BsmI	GAATGC	1 cut(s)	471
BsnI	GGCC	3 cut(s)	479, 536, 613
Bso31I	GGTCTC	1 cut(s)	190
BsoBI	CYCGRG	2 cut(s)	503, 784
Bsp119I	TTCGAA	1 cut(s)	822
Bsp120I	GGGCCC	1 cut(s)	477
Bsp1286I	GDGCHC	6 cut(s)	411, 481, 569, 767, 810, 831
BspANI	GGCC	3 cut(s)	479, 536, 613
BspCNI	CTCAG	2 cut(s)	265, 719
BspFNI	CGCG	1 cut(s)	389
BspLI	GGNNCC	6 cut(s)	66, 232, 276, 479, 488, 656
BspMI	ACCTGC	1 cut(s)	776
BspQI	GCTCTTC	1 cut(s)	785
BspT104I	TTCGAA	1 cut(s)	822
BspT107I	GGYRCC	1 cut(s)	230
BspTNI	GGTCTC	1 cut(s)	190
BsrBI	CCGCTC	2 cut(s)	79, 236
BsrFI	RCCGGY	3 cut(s)	489, 684, 835
BsrI	ACTGG	1 cut(s)	49
BssAI	RCCGGY	3 cut(s)	489, 684, 835
BssECI	CCNNGG	4 cut(s)	312, 481, 504, 531
BssSI	CACGAG	3 cut(s)	562, 676, 775
Bst2BI	CACGAG	3 cut(s)	562, 676, 775
Bst2UI	CCWGG	1 cut(s)	12
Bst4CI	ACNGT	2 cut(s)	21, 230
Bst6I	CTCTTC	2 cut(s)	785, 848
BstAPI	GCANNNNNTGC	1 cut(s)	687
BstBI	TTCGAA	1 cut(s)	822
BstC8I	GCNNGC	4 cut(s)	402, 477, 797, 837
BstDEI	CTNAG	2 cut(s)	252, 706
BstDSI	CCRYGG	1 cut(s)	481
BstF5I	GGATG	4 cut(s)	207, 358, 411, 901
BstFNI	CGCG	1 cut(s)	389
BstH2I	RGCGCY	1 cut(s)	818
BstHHI	GCGC	2 cut(s)	598, 817
BstMAI	GTCTC	1 cut(s)	190
BstMCI	CGRYCG	2 cut(s)	537, 614
BstMWI	GCNNNNNNNGC	8 cut(s)	242, 406, 429, 687, 771, 777, 805, 814
BstNI	CCWGG	1 cut(s)	12
BstNSI	RCATGY	2 cut(s)	475, 835
BstSCI	CCNGG	3 cut(s)	10, 531, 554
BstSLI	GKGCMC	5 cut(s)	481, 569, 767, 810, 831
BstUI	CGCG	1 cut(s)	389
BstV1I	GCAGC	3 cut(s)	83, 105, 384
BstZI	CGGCCG	2 cut(s)	534, 611
BsuRI	GGCC	3 cut(s)	479, 536, 613
BtgI	CCRYGG	1 cut(s)	481
BtgZI	GCGATG	2 cut(s)	181, 404
BtsCI	GGATG	4 cut(s)	207, 358, 411, 901
BtsI	GCAGTG	2 cut(s)	658, 739
BtsIMutI	CAGTG	3 cut(s)	658, 714, 739
BveI	ACCTGC	1 cut(s)	776
Cac8I	GCNNGC	4 cut(s)	402, 477, 797, 837
CfoI	GCGC	2 cut(s)	598, 817
Cfr10I	RCCGGY	3 cut(s)	489, 684, 835
Cfr13I	GGNCC	6 cut(s)	65, 97, 169, 274, 477, 478
CseI	GACGC	2 cut(s)	365, 395
Csp6I	GTAC	2 cut(s)	571, 673
CspAI	ACCGGT	2 cut(s)	489, 684
CviAII	CATG	5 cut(s)	181, 472, 811, 832, 934
CviQI	GTAC	2 cut(s)	571, 673
DdeI	CTNAG	2 cut(s)	252, 706
DraI	TTTAAA	1 cut(s)	723
EaeI	YGGCCR	2 cut(s)	534, 611
EagI	CGGCCG	2 cut(s)	534, 611
Eam1104I	CTCTTC	2 cut(s)	785, 848
EarI	CTCTTC	2 cut(s)	785, 848
EciI	GGCGGA	4 cut(s)	21, 193, 419, 731
EclXI	CGGCCG	2 cut(s)	534, 611
Eco24I	GRGCYC	1 cut(s)	481
Eco31I	GGTCTC	1 cut(s)	190
Eco47I	GGWCC	4 cut(s)	65, 97, 169, 274
Eco52I	CGGCCG	2 cut(s)	534, 611
Eco88I	CYCGRG	2 cut(s)	503, 784
EcoRI	GAATTC	2 cut(s)	550, 954
EcoRII	CCWGG	1 cut(s)	10
EcoT38I	GRGCYC	1 cut(s)	481
FaeI	CATG	5 cut(s)	184, 475, 814, 835, 937
FaiI	YATR	9 cut(s)	182, 473, 812, 833, 887, 935, 965, 967, 1040
FalI	AAGNNNNNCTT	4 cut(s)	686, 718, 716, 748
FatI	CATG	5 cut(s)	180, 471, 810, 831, 933
FauI	CCCGC	3 cut(s)	84, 425, 468
FblI	GTMKAC	1 cut(s)	53
Fnu4HI	GCNGC	7 cut(s)	72, 119, 234, 367, 398, 745, 772
FokI	GGATG	4 cut(s)	194, 365, 398, 908
FriOI	GRGCYC	1 cut(s)	481
Fsp4HI	GCNGC	7 cut(s)	72, 119, 234, 367, 398, 745, 772
FspBI	CTAG	1 cut(s)	753
GlaI	GCGC	2 cut(s)	597, 816
GluI	GCNGC	7 cut(s)	72, 119, 234, 367, 398, 745, 772
HaeII	RGCGCY	1 cut(s)	818
HaeIII	GGCC	3 cut(s)	479, 536, 613
HgaI	GACGC	2 cut(s)	365, 395
HhaI	GCGC	2 cut(s)	598, 817
Hin1II	CATG	5 cut(s)	184, 475, 814, 835, 937
Hin6I	GCGC	2 cut(s)	596, 815
HinP1I	GCGC	2 cut(s)	596, 815
HincII	GTYRAC	3 cut(s)	17, 513, 1044
HindII	GTYRAC	3 cut(s)	17, 513, 1044
HindIII	AAGCTT	1 cut(s)	124
HinfI	GANTC	3 cut(s)	113, 137, 640
HphI	GGTGA	2 cut(s)	124, 637
Hpy166II	GTNNAC	7 cut(s)	17, 54, 337, 385, 513, 765, 1044
Hpy188I	TCNGA	6 cut(s)	101, 255, 274, 313, 960, 988
Hpy188III	TCNNGA	5 cut(s)	91, 319, 496, 649, 784
Hpy8I	GTNNAC	7 cut(s)	17, 54, 337, 385, 513, 765, 1044
Hpy99I	CGWCG	2 cut(s)	578, 943
HpyAV	CCTTC	4 cut(s)	430, 818, 943, 1027
HpyCH4III	ACNGT	2 cut(s)	21, 230
HpyCH4IV	ACGT	2 cut(s)	573, 941
HpyCH4V	TGCA	6 cut(s)	121, 469, 582, 681, 690, 765
HpyF10VI	GCNNNNNNNGC	8 cut(s)	242, 406, 429, 687, 771, 777, 805, 814
HpyF3I	CTNAG	2 cut(s)	252, 706
HpySE526I	ACGT	2 cut(s)	573, 941
Hsp92II	CATG	5 cut(s)	184, 475, 814, 835, 937
HspAI	GCGC	2 cut(s)	596, 815
KroI	GCCGGC	1 cut(s)	835
KroNI	GCCGGC	1 cut(s)	837
LguI	GCTCTTC	1 cut(s)	785
LmnI	GCTCC	6 cut(s)	84, 394, 406, 654, 699, 889
Lsp1109I	GCAGC	3 cut(s)	83, 105, 384
LweI	GCATC	2 cut(s)	204, 442
MaeI	CTAG	1 cut(s)	753
MaeII	ACGT	2 cut(s)	573, 941
MaeIII	GTNAC	1 cut(s)	877
MbiI	CCGCTC	2 cut(s)	79, 236
MboII	GAAGA	3 cut(s)	649, 802, 865
MhlI	GDGCHC	6 cut(s)	411, 481, 569, 767, 810, 831
MluCI	AATT	3 cut(s)	457, 550, 954
MroNI	GCCGGC	1 cut(s)	835
MroXI	GAANNNNTTC	4 cut(s)	112, 440, 491, 644
MseI	TTAA	1 cut(s)	722
MspR9I	CCNGG	3 cut(s)	12, 533, 556
Mva1269I	GAATGC	1 cut(s)	471
MvaI	CCWGG	1 cut(s)	12
MvnI	CGCG	1 cut(s)	389
MwoI	GCNNNNNNNGC	8 cut(s)	242, 406, 429, 687, 771, 777, 805, 814
NaeI	GCCGGC	1 cut(s)	837
NciI	CCSGG	2 cut(s)	533, 556
NgoMIV	GCCGGC	1 cut(s)	835
NlaIII	CATG	5 cut(s)	184, 475, 814, 835, 937
NlaIV	GGNNCC	6 cut(s)	66, 232, 276, 479, 488, 656
NmeAIII	GCCGAG	1 cut(s)	562
NmuCI	GTSAC	1 cut(s)	877
NspI	RCATGY	2 cut(s)	475, 835
NspV	TTCGAA	1 cut(s)	822
PaeR7I	CTCGAG	1 cut(s)	784
PaqCI	CACCTGC	1 cut(s)	776
PciSI	GCTCTTC	1 cut(s)	785
PcsI	WCGNNNNNNNCGW	3 cut(s)	309, 782, 944
PctI	GAATGC	1 cut(s)	471
PdiI	GCCGGC	1 cut(s)	837
PdmI	GAANNNNTTC	4 cut(s)	112, 440, 491, 644
PfeI	GAWTC	3 cut(s)	113, 137, 640
Pfl23II	CGTACG	1 cut(s)	570
PflFI	GACNNNGTC	1 cut(s)	182
PinAI	ACCGGT	2 cut(s)	489, 684
PkrI	GCNGC	7 cut(s)	73, 120, 235, 368, 399, 746, 773
Psp6I	CCWGG	1 cut(s)	10
PspGI	CCWGG	1 cut(s)	10
PspLI	CGTACG	1 cut(s)	570
PspN4I	GGNNCC	6 cut(s)	66, 232, 276, 479, 488, 656
PspOMI	GGGCCC	1 cut(s)	477
PspPI	GGNCC	6 cut(s)	65, 97, 169, 274, 477, 478
PsyI	GACNNNGTC	1 cut(s)	182
RsaI	GTAC	2 cut(s)	572, 674
RsaNI	GTAC	2 cut(s)	571, 673
SapI	GCTCTTC	1 cut(s)	785
SaqAI	TTAA	1 cut(s)	722
SatI	GCNGC	7 cut(s)	72, 119, 234, 367, 398, 745, 772
Sau96I	GGNCC	6 cut(s)	65, 97, 169, 274, 477, 478
ScrFI	CCNGG	3 cut(s)	12, 533, 556
SduI	GDGCHC	6 cut(s)	411, 481, 569, 767, 810, 831
SfaNI	GCATC	2 cut(s)	204, 442
Sfr274I	CTCGAG	1 cut(s)	784
SfuI	TTCGAA	1 cut(s)	822
SinI	GGWCC	4 cut(s)	65, 97, 169, 274
SlaI	CTCGAG	1 cut(s)	784
SmlI	CTYRAG	1 cut(s)	784
SmoI	CTYRAG	1 cut(s)	784
Sse9I	AATT	3 cut(s)	457, 550, 954
SspMI	CTAG	1 cut(s)	753
StyD4I	CCNGG	3 cut(s)	10, 531, 554
TaaI	ACNGT	2 cut(s)	21, 230
TaiI	ACGT	2 cut(s)	576, 944
TaqI	TCGA	5 cut(s)	92, 303, 785, 822, 1013
TasI	AATT	3 cut(s)	457, 550, 954
TatI	WGTACW	1 cut(s)	672
TauI	GCSGC	4 cut(s)	236, 369, 747, 774
TfiI	GAWTC	3 cut(s)	113, 137, 640
Tru1I	TTAA	1 cut(s)	722
Tru9I	TTAA	1 cut(s)	722
TscAI	CASTG	3 cut(s)	665, 714, 746
TseFI	GTSAC	1 cut(s)	877
TseI	GCWGC	3 cut(s)	71, 118, 397
Tsp45I	GTSAC	1 cut(s)	877
TspRI	CASTG	3 cut(s)	665, 714, 746
Tth111I	GACNNNGTC	1 cut(s)	182
VneI	GTGCAC	1 cut(s)	763
VpaK11BI	GGWCC	4 cut(s)	65, 97, 169, 274
XapI	RAATTY	3 cut(s)	457, 550, 954
XceI	RCATGY	2 cut(s)	475, 835
XhoI	CTCGAG	1 cut(s)	784
XmiI	GTMKAC	1 cut(s)	53
XmnI	GAANNNNTTC	4 cut(s)	112, 440, 491, 644
XspI	CTAG	1 cut(s)	753

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.