Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0015831

Physical Location & Seq

Genomic Coordinates Forward (+)

11631688 .. 11632253

Gene Structure 566 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1033900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 174 bp

ATGCATGGAAACACTATCCAGGCACCATGTGGACTCAAAACACGTCCATTTGATTCTATCTTGGCCGAGGTGCGAGCATTCTTTGATGTGCACGAACAAGAAGGGAGCCACCCAGGAGGAATTCATTTAGAGATGACTAGGCAGAATGTGACAGAGTGCATTGGAGGCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003849 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009423 GO:0009507 GO:0009536 GO:0009611 GO:0009987 GO:0016053 GO:0016740 GO:0016765 GO:0019438 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043650 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046417 GO:0050896 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 ko02024 map00400 map01100 map01110 map01130 map01230 map02024

Pfam Domains

Protein Families

DAHP_synth_2

Protein Analysis

58

Amino Acids

6.22

Weight (kDa)

5.66

Isoelectric Point (pI)

57.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAHP_synth_2	PF01474	1 - 57	2e-24	Class-II DAHP synthetase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0015831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39980
fragaria_vesca	FvH4_1g20450
malus_domestica	MD00G1037100.v1.1 MD01G1033900.v1.1
prunus_persica	Prupe.6G191200_v2.0.a1
pyrus_communis	pycom01g06110
rosa_chinensis	RchiOBHm_Chr2g0112721
rosa_laevigata	RLG00000018004
rosa_multiflora	Rmu_sc0001708.1_g000045
rosa_roxburghii	Rroxscaffold_2G00131220
rosa_rugosa	Rorug02G0182000
rosa_samantha	Rh2BG249400 Rh2CG240500 Rh2DG244000
rosa_wichuraiana	Rw2G018280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	22
AcoI	YGGCCR	1 cut(s)	63
AcsI	RAATTY	1 cut(s)	120
AdeI	CACNNNGTG	1 cut(s)	29
AflIII	ACRYGT	1 cut(s)	41
AjiI	CACGTC	1 cut(s)	44
AjnI	CCWGG	2 cut(s)	18, 112
Alw21I	GWGCWC	1 cut(s)	93
Alw44I	GTGCAC	1 cut(s)	89
AoxI	GGCC	1 cut(s)	63
ApaLI	GTGCAC	1 cut(s)	89
ApoI	RAATTY	1 cut(s)	120
BaeGI	GKGCMC	1 cut(s)	93
BanI	GGYRCC	1 cut(s)	22
Bbv12I	GWGCWC	1 cut(s)	93
BciT130I	CCWGG	2 cut(s)	20, 114
BfaI	CTAG	1 cut(s)	138
Bme1390I	CCNGG	2 cut(s)	20, 114
BmgBI	CACGTC	1 cut(s)	44
BmiI	GGNNCC	2 cut(s)	24, 107
BmrFI	CCNGG	2 cut(s)	20, 114
BsaJI	CCNNGG	2 cut(s)	66, 112
BseBI	CCWGG	2 cut(s)	20, 114
BseDI	CCNNGG	2 cut(s)	66, 112
BseSI	GKGCMC	1 cut(s)	93
BshFI	GGCC	1 cut(s)	65
BshNI	GGYRCC	1 cut(s)	22
BsiHKAI	GWGCWC	1 cut(s)	93
BsmI	GAATGC	1 cut(s)	77
BsnI	GGCC	1 cut(s)	65
Bsp1286I	GDGCHC	1 cut(s)	93
BspANI	GGCC	1 cut(s)	65
BspLI	GGNNCC	2 cut(s)	24, 107
BspT107I	GGYRCC	1 cut(s)	22
BssECI	CCNNGG	2 cut(s)	66, 112
Bst2UI	CCWGG	2 cut(s)	20, 114
BstC8I	GCNNGC	1 cut(s)	75
BstMWI	GCNNNNNNNGC	1 cut(s)	165
BstNI	CCWGG	2 cut(s)	20, 114
BstSCI	CCNGG	2 cut(s)	18, 112
BstSLI	GKGCMC	1 cut(s)	93
BsuRI	GGCC	1 cut(s)	65
BtrI	CACGTC	1 cut(s)	44
Cac8I	GCNNGC	1 cut(s)	75
CviAII	CATG	2 cut(s)	5, 27
CviJI	RGCY	3 cut(s)	65, 108, 168
CviKI_1	RGCY	3 cut(s)	65, 108, 168
DraIII	CACNNNGTG	1 cut(s)	29
EaeI	YGGCCR	1 cut(s)	63
EcoRI	GAATTC	1 cut(s)	120
EcoRII	CCWGG	2 cut(s)	18, 112
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	2 cut(s)	8, 30
FaiI	YATR	2 cut(s)	6, 28
FatI	CATG	2 cut(s)	4, 26
FspBI	CTAG	1 cut(s)	138
HaeIII	GGCC	1 cut(s)	65
Hin1II	CATG	2 cut(s)	8, 30
HinfI	GANTC	2 cut(s)	33, 53
Hpy166II	GTNNAC	2 cut(s)	32, 91
Hpy188III	TCNNGA	1 cut(s)	171
Hpy8I	GTNNAC	2 cut(s)	32, 91
HpyAV	CCTTC	1 cut(s)	95
HpyCH4IV	ACGT	1 cut(s)	43
HpyCH4V	TGCA	3 cut(s)	4, 91, 159
HpyF10VI	GCNNNNNNNGC	1 cut(s)	165
HpySE526I	ACGT	1 cut(s)	43
Hsp92II	CATG	2 cut(s)	8, 30
LmnI	GCTCC	1 cut(s)	105
LpnPI	CCDG	4 cut(s)	5, 32, 99, 126
MaeI	CTAG	1 cut(s)	138
MaeII	ACGT	1 cut(s)	43
MaeIII	GTNAC	1 cut(s)	148
MhlI	GDGCHC	1 cut(s)	93
MluCI	AATT	1 cut(s)	120
MlyI	GAGTC	1 cut(s)	27
MnlI	CCTC	3 cut(s)	61, 110, 158
Mph1103I	ATGCAT	1 cut(s)	6
MspR9I	CCNGG	2 cut(s)	20, 114
Mva1269I	GAATGC	1 cut(s)	77
MvaI	CCWGG	2 cut(s)	20, 114
MwoI	GCNNNNNNNGC	1 cut(s)	165
NlaIII	CATG	2 cut(s)	8, 30
NlaIV	GGNNCC	2 cut(s)	24, 107
NmeAIII	GCCGAG	1 cut(s)	91
NmuCI	GTSAC	1 cut(s)	148
NsiI	ATGCAT	1 cut(s)	6
PctI	GAATGC	1 cut(s)	77
PfeI	GAWTC	1 cut(s)	53
PleI	GAGTC	1 cut(s)	27
PpsI	GAGTC	1 cut(s)	27
Psp6I	CCWGG	2 cut(s)	18, 112
PspGI	CCWGG	2 cut(s)	18, 112
PspN4I	GGNNCC	2 cut(s)	24, 107
SchI	GAGTC	1 cut(s)	27
ScrFI	CCNGG	2 cut(s)	20, 114
SduI	GDGCHC	1 cut(s)	93
SetI	ASST	2 cut(s)	46, 72
Sse9I	AATT	1 cut(s)	120
SspMI	CTAG	1 cut(s)	138
StyD4I	CCNGG	2 cut(s)	18, 112
TaiI	ACGT	1 cut(s)	46
TasI	AATT	1 cut(s)	120
TfiI	GAWTC	1 cut(s)	53
TseFI	GTSAC	1 cut(s)	148
Tsp45I	GTSAC	1 cut(s)	148
TspDTI	ATGAA	1 cut(s)	113
VneI	GTGCAC	1 cut(s)	89
XapI	RAATTY	1 cut(s)	120
XcmI	CCANNNNNNNNNTGG	1 cut(s)	26
XspI	CTAG	1 cut(s)	138
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.