Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0015831

Physical Location & Seq

Genomic Coordinates Forward (+)

6213068 .. 6215665

Gene Structure 2598 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g06110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1593 bp

ATGGCTCTGACAAACCCAGCAACCCTGTCCTCCAAATCAATCTGCAACACTCACTCTCTCTCCCCTTCCACCCCTCAGTCTCACCAACCCATTTTCTCCCCATTCGCTTCCAAGAAAAAGACACTCCACCCCATCTGCGCCGCCGACTCCGGTAAGTCTTCCGTCGTGGCCGAGAAGCCTCCCAAGTCGGCTTCGGCGCCCACGAAGCCTGTTTCCGGCAAATGGAGCTTGGACAGCTGGAAATCCAAGAAGGCCCTGCAGCTTCCGGAGTACCCAGATGTGAACGAGCTGGAGACGGTGCTCAAGACCATCGAGTCTTTTCCTCCGATTGTGTTCGCCGGAGAGGCCAGGCACTTGGAGGAGAAGCTAGCCGAGGCAGCCTTGGGCAACGCTTTTCTCTTGCAGGGCGGCGACTGCGCTGAGAGCTTCAAGGAGTTCAGCGCCAACAACATTAGGGACACCTTCAGAATTATGCTTCAGATGGGTGTTGTTCTGATGTTTGGAGGACAAATGCCTGTTATCAAGGTAGGAAGAATGGCGGGCCAGTTCGCGAAGCCAAGATCGGCGGAGTTCGAGGAGAAGGATGGGGTAAAGTTGCCGGTTTACAAAGGGGATAACATCAATGGTGATGCTTTCGATGAGAAAAATAGAAGTCCAGACCCCCAGAGGTTGATAAGAGCTTATTCCCAGTCTGCGGCGACTTTGAACCTTCTTCGGGCCTTTGCCACTGGAGGGTATGCTGCTATGCAGAGGGTTACTCAATGGAATCTGGATTTCGCTGAGCACAGCGAGCAGGGAGATAGGTACCACGAACTGGCTAGCCGGGTCGACGAGGCCTTAGGGTTCATGAATGCTGCTGGACTTACAGTTGACCATCCTATCATGACAACAACTGATTTCTGGACATCCCACGAATGTCTGCATCTACCGTATGAGCAATCACTCACAAGATTGGATTCTACTTCCGGTCTGTACTATGATTGCTCCGCCCACATGCTTTGGGTTGGTGAGCGTACCCGGCAACTGGATGGTGCCCATGTAGAGTTCCTAAGAGGACTTGCCAATCCCATCGGCATCAAGGTAAGCAATAAAATGGATCCAAAAGATCTTGTTAACATCATCGAAATCCTGAACCCGAGTAACAAGCCAGGAAGGATCACAATCATTGCTAGAATGGGTGCTGAGAACATGAGAGTCAAGCTTCCTCATTTGATTAGGGCTGTCCGCCAAGCAGGGCAGATTGTGACATGGATCTCCGATCCAATGCATGGAAACACCATCCAGGCACCCTGTGGACTCAAAACACGTCCATTTGATTCAATCTTGGCCGAGGTGCGAGCATTCTTTGATGTGCACGAACAAGAAGGGAGCCACCCAGGAGGAATTCATTTGGAGATGACTGGGCAGAATGTGACAGAGTGCATTGGAGGCTCTCTAACAGTGACTTTGGACGATCTGAGCTCGCGATACCACACGCACTGCGACCCCAGGCTCAATGCTTCTCAGGCTCTTGAGCTATCCTTCATCATTGCAGAACGACTTAGGAAGAGAAGGATGGGAACTCAAAGTTTGCTCTCGTTGGGTGGCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003849 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009423 GO:0009507 GO:0009536 GO:0009611 GO:0009987 GO:0016053 GO:0016740 GO:0016765 GO:0019438 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043650 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0046417 GO:0050896 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 ko02024 map00400 map01100 map01110 map01130 map01230 map02024

Pfam Domains

Protein Families

DAHP_synth_2

Protein Analysis

531

Amino Acids

58.36

Weight (kDa)

7.02

Isoelectric Point (pI)

43.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DAHP_synth_2	PF01474	75 - 511	2.7e-202	Class-II DAHP synthetase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G39980
fragaria_vesca	FvH4_1g20450
malus_domestica	MD00G1037100.v1.1 MD01G1033900.v1.1
prunus_persica	Prupe.6G191200_v2.0.a1
pyrus_communis	pycom01g06110
rosa_chinensis	RchiOBHm_Chr2g0112721
rosa_laevigata	RLG00000018004
rosa_multiflora	Rmu_sc0001708.1_g000045
rosa_roxburghii	Rroxscaffold_2G00131220
rosa_rugosa	Rorug02G0182000
rosa_samantha	Rh2BG249400 Rh2CG240500 Rh2DG244000
rosa_wichuraiana	Rw2G018280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	313
Acc65I	GGTACC	1 cut(s)	804
AccB1I	GGYRCC	4 cut(s)	196, 804, 1031, 1285
AccB7I	CCANNNNNTGG	2 cut(s)	814, 1268
AccI	GTMKAC	1 cut(s)	828
AccII	CGCG	2 cut(s)	551, 1465
AccIII	TCCGGA	1 cut(s)	265
AciI	CCGC	7 cut(s)	141, 408, 539, 566, 695, 987, 1225
AclWI	GGATC	5 cut(s)	1091, 1104, 1163, 1253, 1259
AcoI	YGGCCR	2 cut(s)	168, 1326
AcsI	RAATTY	1 cut(s)	1383
AcuI	CTGAAG	2 cut(s)	448, 461
AcyI	GRCGYC	1 cut(s)	197
AdeI	CACNNNGTG	1 cut(s)	1292
AfaI	GTAC	4 cut(s)	272, 806, 974, 1015
AfiI	CCNNNNNNNGG	8 cut(s)	215, 222, 694, 715, 732, 814, 1024, 1268
AflIII	ACRYGT	1 cut(s)	1304
AgsI	TTSAA	3 cut(s)	430, 706, 1320
AjiI	CACGTC	1 cut(s)	1307
AjnI	CCWGG	5 cut(s)	347, 1147, 1281, 1375, 1487
Alw21I	GWGCWC	4 cut(s)	303, 786, 1356, 1463
Alw26I	GTCTC	2 cut(s)	84, 287
Alw44I	GTGCAC	1 cut(s)	1352
AlwI	GGATC	5 cut(s)	1091, 1104, 1163, 1253, 1259
Ama87I	CYCGRG	1 cut(s)	1135
Aor13HI	TCCGGA	1 cut(s)	265
AoxI	GGCC	8 cut(s)	168, 252, 345, 541, 717, 834, 1326, 1585
ApaLI	GTGCAC	1 cut(s)	1352
ApeKI	GCWGC	4 cut(s)	259, 377, 740, 854
ApoI	RAATTY	1 cut(s)	1383
Asp718I	GGTACC	1 cut(s)	804
AspLEI	GCGC	4 cut(s)	140, 199, 419, 443
AspS9I	GGNCC	3 cut(s)	253, 541, 717
AsuC2I	CCSGG	2 cut(s)	824, 1018
AsuHPI	GGTGA	3 cut(s)	74, 638, 1019
AsuNHI	GCTAGC	2 cut(s)	367, 818
AvaI	CYCGRG	1 cut(s)	1135
AxyI	CCTNAGG	1 cut(s)	838
BaeGI	GKGCMC	2 cut(s)	1036, 1356
BamHI	GGATCC	1 cut(s)	1096
BanI	GGYRCC	4 cut(s)	196, 804, 1031, 1285
BanII	GRGCYC	1 cut(s)	1463
BbsI	GAAGAC	1 cut(s)	150
Bbv12I	GWGCWC	4 cut(s)	303, 786, 1356, 1463
BbvI	GCAGC	4 cut(s)	271, 389, 727, 841
BccI	CCATC	9 cut(s)	140, 317, 475, 578, 882, 1022, 1076, 1286, 1549
BciT130I	CCWGG	5 cut(s)	349, 1149, 1283, 1377, 1489
BcnI	CCSGG	2 cut(s)	824, 1018
BcoDI	GTCTC	2 cut(s)	84, 287
BfaI	CTAG	3 cut(s)	368, 819, 1170
BfmI	CTRYAG	1 cut(s)	257
BfoI	RGCGCY	2 cut(s)	200, 444
BglI	GCCNNNNNGGC	1 cut(s)	344
BglII	AGATCT	1 cut(s)	1105
BisI	GCNGC	7 cut(s)	141, 260, 378, 409, 696, 741, 855
BlpI	GCTNAGC	1 cut(s)	780
BlsI	GCNGC	7 cut(s)	142, 261, 379, 410, 697, 742, 856
Bme1390I	CCNGG	7 cut(s)	349, 824, 1018, 1149, 1283, 1377, 1489
BmeT110I	CYCGRG	1 cut(s)	1135
BmgBI	CACGTC	1 cut(s)	1307
BmgT120I	GGNCC	3 cut(s)	253, 541, 717
BmiI	GGNNCC	6 cut(s)	198, 806, 1033, 1098, 1287, 1370
BmrFI	CCNGG	7 cut(s)	349, 824, 1018, 1149, 1283, 1377, 1489
BmrI	ACTGGG	2 cut(s)	682, 1410
BmsI	GCATC	3 cut(s)	619, 931, 1083
BmtI	GCTAGC	2 cut(s)	371, 822
BmuI	ACTGGG	2 cut(s)	682, 1410
BpiI	GAAGAC	1 cut(s)	150
BplI	GAGNNNNNCTC	2 cut(s)	742, 774
BpmI	CTGGAG	2 cut(s)	311, 750
Bpu1102I	GCTNAGC	1 cut(s)	780
BpuEI	CTTGAG	2 cut(s)	287, 1532
BpuMI	CCSGG	2 cut(s)	824, 1018
BsaBI	GATNNNNATC	1 cut(s)	1160
BsaHI	GRCGYC	1 cut(s)	197
BsaJI	CCNNGG	5 cut(s)	372, 381, 1329, 1375, 1487
BsaWI	WCCGGW	3 cut(s)	149, 265, 965
BsaXI	ACNNNNNCTCC	2 cut(s)	44, 74
Bsc4I	CCNNNNNNNGG	8 cut(s)	215, 222, 694, 715, 732, 814, 1024, 1268
Bse118I	RCCGGY	1 cut(s)	598
Bse1I	ACTGG	6 cut(s)	544, 688, 733, 819, 1029, 1405
Bse21I	CCTNAGG	1 cut(s)	838
Bse3DI	GCAATG	2 cut(s)	1164, 1527
Bse8I	GATNNNNATC	1 cut(s)	1160
BseAI	TCCGGA	1 cut(s)	265
BseBI	CCWGG	5 cut(s)	349, 1149, 1283, 1377, 1489
BseDI	CCNNGG	5 cut(s)	372, 381, 1329, 1375, 1487
BseGI	GGATG	6 cut(s)	589, 874, 905, 1033, 1278, 1560
BseJI	GATNNNNATC	1 cut(s)	1160
BseLI	CCNNNNNNNGG	8 cut(s)	215, 222, 694, 715, 732, 814, 1024, 1268
BseMI	GCAATG	2 cut(s)	1164, 1527
BseMII	CTCAG	6 cut(s)	89, 411, 771, 1173, 1448, 1517
BseNI	ACTGG	6 cut(s)	544, 688, 733, 819, 1029, 1405
BseRI	GAGGAG	2 cut(s)	374, 590
BseSI	GKGCMC	2 cut(s)	1036, 1356
BseXI	GCAGC	4 cut(s)	271, 389, 727, 841
BseYI	CCCAGC	1 cut(s)	16
Bsh1236I	CGCG	2 cut(s)	551, 1465
BshFI	GGCC	8 cut(s)	170, 254, 347, 543, 719, 836, 1328, 1587
BshNI	GGYRCC	4 cut(s)	196, 804, 1031, 1285
BsiHKAI	GWGCWC	4 cut(s)	303, 786, 1356, 1463
BsiHKCI	CYCGRG	1 cut(s)	1135
BsiSI	CCGG	8 cut(s)	150, 216, 266, 339, 599, 823, 966, 1018
BslFI	GGGAC	1 cut(s)	470
BslI	CCNNNNNNNGG	8 cut(s)	215, 222, 694, 715, 732, 814, 1024, 1268
BsmAI	GTCTC	2 cut(s)	84, 287
BsmBI	CGTCTC	1 cut(s)	287
BsmFI	GGGAC	1 cut(s)	470
BsmI	GAATGC	2 cut(s)	856, 1340
BsnI	GGCC	8 cut(s)	170, 254, 347, 543, 719, 836, 1328, 1587
BsoBI	CYCGRG	1 cut(s)	1135
Bsp1286I	GDGCHC	5 cut(s)	303, 786, 1036, 1356, 1463
Bsp13I	TCCGGA	1 cut(s)	265
Bsp143I	GATC	7 cut(s)	560, 1096, 1105, 1155, 1251, 1258, 1453
Bsp1720I	GCTNAGC	1 cut(s)	780
Bsp68I	TCGCGA	2 cut(s)	551, 1465
BspACI	CCGC	7 cut(s)	141, 408, 539, 566, 695, 987, 1225
BspANI	GGCC	8 cut(s)	170, 254, 347, 543, 719, 836, 1328, 1587
BspCNI	CTCAG	6 cut(s)	88, 412, 772, 1174, 1449, 1516
BspEI	TCCGGA	1 cut(s)	265
BspFNI	CGCG	2 cut(s)	551, 1465
BspHI	TCATGA	2 cut(s)	846, 882
BspLI	GGNNCC	6 cut(s)	198, 806, 1033, 1098, 1287, 1370
BspMAI	CTGCAG	1 cut(s)	261
BspOI	GCTAGC	2 cut(s)	371, 822
BspPI	GGATC	5 cut(s)	1091, 1104, 1163, 1253, 1259
BspT107I	GGYRCC	4 cut(s)	196, 804, 1031, 1285
BsrDI	GCAATG	2 cut(s)	1164, 1527
BsrFI	RCCGGY	1 cut(s)	598
BsrI	ACTGG	6 cut(s)	544, 688, 733, 819, 1029, 1405
BssAI	RCCGGY	1 cut(s)	598
BssECI	CCNNGG	5 cut(s)	372, 381, 1329, 1375, 1487
BssMI	GATC	7 cut(s)	560, 1096, 1105, 1155, 1251, 1258, 1453
BssNI	GRCGYC	1 cut(s)	197
BssT1I	CCWWGG	1 cut(s)	381
Bst2UI	CCWGG	5 cut(s)	349, 1149, 1283, 1377, 1489
Bst4CI	ACNGT	4 cut(s)	298, 868, 930, 1441
Bst6I	CTCTTC	1 cut(s)	1541
BstACI	GRCGYC	1 cut(s)	197
BstC8I	GCNNGC	6 cut(s)	369, 541, 791, 820, 1338, 1463
BstDEI	CTNAG	9 cut(s)	75, 420, 780, 838, 1049, 1182, 1457, 1503, 1541
BstF5I	GGATG	6 cut(s)	589, 874, 905, 1033, 1278, 1560
BstFNI	CGCG	2 cut(s)	551, 1465
BstH2I	RGCGCY	2 cut(s)	200, 444
BstHHI	GCGC	4 cut(s)	140, 199, 419, 443
BstKTI	GATC	7 cut(s)	563, 1099, 1108, 1158, 1254, 1261, 1456
BstMAI	GTCTC	2 cut(s)	84, 287
BstMBI	GATC	7 cut(s)	560, 1096, 1105, 1155, 1251, 1258, 1453
BstNI	CCWGG	5 cut(s)	349, 1149, 1283, 1377, 1489
BstNSI	RCATGY	1 cut(s)	997
BstSCI	CCNGG	7 cut(s)	347, 822, 1016, 1147, 1281, 1375, 1487
BstSFI	CTRYAG	1 cut(s)	257
BstSLI	GKGCMC	2 cut(s)	1036, 1356
BstUI	CGCG	2 cut(s)	551, 1465
BstV1I	GCAGC	4 cut(s)	271, 389, 727, 841
BstV2I	GAAGAC	1 cut(s)	150
BstX2I	RGATCY	3 cut(s)	1096, 1105, 1251
BstXI	CCANNNNNNTGG	1 cut(s)	355
BstYI	RGATCY	3 cut(s)	1096, 1105, 1251
Bsu36I	CCTNAGG	1 cut(s)	838
BsuRI	GGCC	8 cut(s)	170, 254, 347, 543, 719, 836, 1328, 1587
BtrI	CACGTC	1 cut(s)	1307
BtsCI	GGATG	6 cut(s)	589, 874, 905, 1033, 1278, 1560
BtsI	GCAGTG	1 cut(s)	1477
BtsIMutI	CAGTG	3 cut(s)	726, 1446, 1477
BtuMI	TCGCGA	2 cut(s)	551, 1465
Cac8I	GCNNGC	6 cut(s)	369, 541, 791, 820, 1338, 1463
CciI	TCATGA	2 cut(s)	846, 882
CfoI	GCGC	4 cut(s)	140, 199, 419, 443
Cfr10I	RCCGGY	1 cut(s)	598
Cfr13I	GGNCC	3 cut(s)	253, 541, 717
Csp6I	GTAC	4 cut(s)	271, 805, 973, 1014
CspCI	CAANNNNNGTGG	2 cut(s)	980, 1015
CviAII	CATG	7 cut(s)	847, 883, 994, 1037, 1189, 1248, 1268
CviQI	GTAC	4 cut(s)	271, 805, 973, 1014
DdeI	CTNAG	9 cut(s)	75, 420, 780, 838, 1049, 1182, 1457, 1503, 1541
DinI	GGCGCC	1 cut(s)	198
DpnI	GATC	7 cut(s)	562, 1098, 1107, 1157, 1253, 1260, 1455
DpnII	GATC	7 cut(s)	560, 1096, 1105, 1155, 1251, 1258, 1453
DraIII	CACNNNGTG	1 cut(s)	1292
DrdI	GACNNNNNNGTC	1 cut(s)	313
DseDI	GACNNNNNNGTC	1 cut(s)	313
EaeI	YGGCCR	2 cut(s)	168, 1326
Eam1104I	CTCTTC	1 cut(s)	1541
EarI	CTCTTC	1 cut(s)	1541
EciI	GGCGGA	3 cut(s)	581, 976, 1214
Ecl136II	GAGCTC	1 cut(s)	1461
Eco130I	CCWWGG	1 cut(s)	381
Eco147I	AGGCCT	1 cut(s)	836
Eco24I	GRGCYC	1 cut(s)	1463
Eco53kI	GAGCTC	1 cut(s)	1461
Eco57I	CTGAAG	2 cut(s)	448, 461
Eco81I	CCTNAGG	1 cut(s)	838
Eco88I	CYCGRG	1 cut(s)	1135
EcoICRI	GAGCTC	1 cut(s)	1461
EcoO109I	RGGNCCY	1 cut(s)	253
EcoRI	GAATTC	1 cut(s)	1383
EcoRII	CCWGG	5 cut(s)	347, 1147, 1281, 1375, 1487
EcoT14I	CCWWGG	1 cut(s)	381
EcoT22I	ATGCAT	1 cut(s)	1269
EcoT38I	GRGCYC	1 cut(s)	1463
EgeI	GGCGCC	1 cut(s)	198
EheI	GGCGCC	1 cut(s)	198
ErhI	CCWWGG	1 cut(s)	381
Esp3I	CGTCTC	1 cut(s)	287
FaeI	CATG	7 cut(s)	850, 886, 997, 1040, 1192, 1251, 1271
FaqI	GGGAC	1 cut(s)	470
FatI	CATG	7 cut(s)	846, 882, 993, 1036, 1188, 1247, 1267
FauI	CCCGC	1 cut(s)	532
FblI	GTMKAC	1 cut(s)	828
Fnu4HI	GCNGC	7 cut(s)	141, 260, 378, 409, 696, 741, 855
FokI	GGATG	6 cut(s)	596, 861, 892, 1040, 1265, 1567
FriOI	GRGCYC	1 cut(s)	1463
Fsp4HI	GCNGC	7 cut(s)	141, 260, 378, 409, 696, 741, 855
FspBI	CTAG	3 cut(s)	368, 819, 1170
GlaI	GCGC	4 cut(s)	139, 198, 418, 442
GluI	GCNGC	7 cut(s)	141, 260, 378, 409, 696, 741, 855
GsaI	CCCAGC	1 cut(s)	20
GsuI	CTGGAG	2 cut(s)	311, 750
HaeII	RGCGCY	2 cut(s)	200, 444
HaeIII	GGCC	8 cut(s)	170, 254, 347, 543, 719, 836, 1328, 1587
HapII	CCGG	8 cut(s)	150, 216, 266, 339, 599, 823, 966, 1018
HhaI	GCGC	4 cut(s)	140, 199, 419, 443
Hin1I	GRCGYC	1 cut(s)	197
Hin1II	CATG	7 cut(s)	850, 886, 997, 1040, 1192, 1251, 1271
Hin6I	GCGC	4 cut(s)	138, 197, 417, 441
HinP1I	GCGC	4 cut(s)	138, 197, 417, 441
HincII	GTYRAC	3 cut(s)	829, 871, 1114
HindII	GTYRAC	3 cut(s)	829, 871, 1114
HindIII	AAGCTT	1 cut(s)	1199
HinfI	GANTC	7 cut(s)	146, 314, 766, 956, 1194, 1296, 1316
HpaI	GTTAAC	1 cut(s)	1114
HpaII	CCGG	8 cut(s)	150, 216, 266, 339, 599, 823, 966, 1018
HphI	GGTGA	3 cut(s)	74, 638, 1019
Hpy166II	GTNNAC	7 cut(s)	283, 604, 829, 871, 1114, 1295, 1354
Hpy188I	TCNGA	8 cut(s)	9, 327, 467, 480, 495, 1258, 1458, 1592
Hpy8I	GTNNAC	7 cut(s)	283, 604, 829, 871, 1114, 1295, 1354
Hpy99I	CGWCG	2 cut(s)	167, 833
HpyAV	CCTTC	9 cut(s)	75, 244, 472, 574, 719, 1146, 1358, 1531, 1545
HpyCH4III	ACNGT	4 cut(s)	298, 868, 930, 1441
HpyCH4IV	ACGT	1 cut(s)	1306
HpyCH4V	TGCA	9 cut(s)	45, 259, 403, 748, 922, 1267, 1354, 1422, 1532
HpyF3I	CTNAG	9 cut(s)	75, 420, 780, 838, 1049, 1182, 1457, 1503, 1541
HpySE526I	ACGT	1 cut(s)	1306
Hsp92I	GRCGYC	1 cut(s)	197
Hsp92II	CATG	7 cut(s)	850, 886, 997, 1040, 1192, 1251, 1271
HspAI	GCGC	4 cut(s)	138, 197, 417, 441
KasI	GGCGCC	1 cut(s)	196
Kpn2I	TCCGGA	1 cut(s)	265
KpnI	GGTACC	1 cut(s)	808
KspAI	GTTAAC	1 cut(s)	1114
Kzo9I	GATC	7 cut(s)	560, 1096, 1105, 1155, 1251, 1258, 1453
LmnI	GCTCC	3 cut(s)	225, 989, 1368
Lsp1109I	GCAGC	4 cut(s)	271, 389, 727, 841
LweI	GCATC	3 cut(s)	619, 931, 1083
MaeI	CTAG	3 cut(s)	368, 819, 1170
MaeII	ACGT	1 cut(s)	1306
MaeIII	GTNAC	5 cut(s)	754, 1139, 1243, 1411, 1441
MalI	GATC	7 cut(s)	562, 1098, 1107, 1157, 1253, 1260, 1455
MboI	GATC	7 cut(s)	560, 1096, 1105, 1155, 1251, 1258, 1453
MboII	GAAGA	4 cut(s)	150, 543, 704, 1558
MflI	RGATCY	3 cut(s)	1096, 1105, 1251
MhlI	GDGCHC	5 cut(s)	303, 786, 1036, 1356, 1463
MluCI	AATT	2 cut(s)	468, 1383
Mly113I	GGCGCC	1 cut(s)	197
MlyI	GAGTC	4 cut(s)	140, 323, 1203, 1290
Mph1103I	ATGCAT	1 cut(s)	1269
MroI	TCCGGA	1 cut(s)	265
MseI	TTAA	1 cut(s)	1113
MspA1I	CMGCKG	1 cut(s)	237
MspI	CCGG	8 cut(s)	150, 216, 266, 339, 599, 823, 966, 1018
MspR9I	CCNGG	7 cut(s)	349, 824, 1018, 1149, 1283, 1377, 1489
Mva1269I	GAATGC	2 cut(s)	856, 1340
MvaI	CCWGG	5 cut(s)	349, 1149, 1283, 1377, 1489
MvnI	CGCG	2 cut(s)	551, 1465
NarI	GGCGCC	1 cut(s)	197
NciI	CCSGG	2 cut(s)	824, 1018
NdeII	GATC	7 cut(s)	560, 1096, 1105, 1155, 1251, 1258, 1453
NheI	GCTAGC	2 cut(s)	367, 818
NlaIII	CATG	7 cut(s)	850, 886, 997, 1040, 1192, 1251, 1271
NlaIV	GGNNCC	6 cut(s)	198, 806, 1033, 1098, 1287, 1370
NmeAIII	GCCGAG	3 cut(s)	196, 397, 1354
NmuCI	GTSAC	3 cut(s)	1243, 1411, 1441
NruI	TCGCGA	2 cut(s)	551, 1465
NsiI	ATGCAT	1 cut(s)	1269
NspI	RCATGY	1 cut(s)	997
PagI	TCATGA	2 cut(s)	846, 882
PceI	AGGCCT	1 cut(s)	836
PcsI	WCGNNNNNNNCGW	1 cut(s)	200
PctI	GAATGC	2 cut(s)	856, 1340
PfeI	GAWTC	3 cut(s)	766, 956, 1316
PflMI	CCANNNNNTGG	2 cut(s)	814, 1268
PkrI	GCNGC	7 cut(s)	142, 261, 379, 410, 697, 742, 856
PleI	GAGTC	4 cut(s)	140, 322, 1202, 1290
PluTI	GGCGCC	1 cut(s)	200
PpsI	GAGTC	4 cut(s)	140, 322, 1202, 1290
Psp124BI	GAGCTC	1 cut(s)	1463
Psp6I	CCWGG	5 cut(s)	347, 1147, 1281, 1375, 1487
PspFI	CCCAGC	1 cut(s)	16
PspGI	CCWGG	5 cut(s)	347, 1147, 1281, 1375, 1487
PspN4I	GGNNCC	6 cut(s)	198, 806, 1033, 1098, 1287, 1370
PspPI	GGNCC	3 cut(s)	253, 541, 717
PstI	CTGCAG	1 cut(s)	261
PsuI	RGATCY	3 cut(s)	1096, 1105, 1251
PvuII	CAGCTG	1 cut(s)	237
RruI	TCGCGA	2 cut(s)	551, 1465
RsaI	GTAC	4 cut(s)	272, 806, 974, 1015
RsaNI	GTAC	4 cut(s)	271, 805, 973, 1014
SacI	GAGCTC	1 cut(s)	1463
SalI	GTCGAC	1 cut(s)	827
SaqAI	TTAA	1 cut(s)	1113
SatI	GCNGC	7 cut(s)	141, 260, 378, 409, 696, 741, 855
Sau3AI	GATC	7 cut(s)	560, 1096, 1105, 1155, 1251, 1258, 1453
Sau96I	GGNCC	3 cut(s)	253, 541, 717
SchI	GAGTC	4 cut(s)	140, 323, 1203, 1290
ScrFI	CCNGG	7 cut(s)	349, 824, 1018, 1149, 1283, 1377, 1489
SduI	GDGCHC	5 cut(s)	303, 786, 1036, 1356, 1463
SfaNI	GCATC	3 cut(s)	619, 931, 1083
SfcI	CTRYAG	1 cut(s)	257
SfoI	GGCGCC	1 cut(s)	198
SmlI	CTYRAG	2 cut(s)	302, 1511
SmoI	CTYRAG	2 cut(s)	302, 1511
Sse9I	AATT	2 cut(s)	468, 1383
SseBI	AGGCCT	1 cut(s)	836
SsiI	CCGC	7 cut(s)	141, 408, 539, 566, 695, 987, 1225
SspDI	GGCGCC	1 cut(s)	196
SspMI	CTAG	3 cut(s)	368, 819, 1170
SstI	GAGCTC	1 cut(s)	1463
StuI	AGGCCT	1 cut(s)	836
StyD4I	CCNGG	7 cut(s)	347, 822, 1016, 1147, 1281, 1375, 1487
StyI	CCWWGG	1 cut(s)	381
TaaI	ACNGT	4 cut(s)	298, 868, 930, 1441
TaiI	ACGT	1 cut(s)	1309
TaqI	TCGA	5 cut(s)	312, 573, 636, 828, 1122
TasI	AATT	2 cut(s)	468, 1383
TatI	WGTACW	1 cut(s)	972
TauI	GCSGC	3 cut(s)	143, 411, 698
TfiI	GAWTC	3 cut(s)	766, 956, 1316
Tru1I	TTAA	1 cut(s)	1113
Tru9I	TTAA	1 cut(s)	1113
TscAI	CASTG	3 cut(s)	733, 1446, 1484
TseFI	GTSAC	3 cut(s)	1243, 1411, 1441
TseI	GCWGC	4 cut(s)	259, 377, 740, 854
Tsp45I	GTSAC	3 cut(s)	1243, 1411, 1441
TspDTI	ATGAA	4 cut(s)	835, 863, 1376, 1513
TspGWI	ACGGA	1 cut(s)	151
TspRI	CASTG	3 cut(s)	733, 1446, 1484
Van91I	CCANNNNNTGG	2 cut(s)	814, 1268
VneI	GTGCAC	1 cut(s)	1352
XapI	RAATTY	1 cut(s)	1383
XceI	RCATGY	1 cut(s)	997
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1289
XmiI	GTMKAC	1 cut(s)	828
XspI	CTAG	3 cut(s)	368, 819, 1170
Zsp2I	ATGCAT	1 cut(s)	1269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.