MD01G1035200.v1.1

Pentatricopeptide repeat-containing protein At4g02750-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0016737
Physical Location & Seq
Reverse (-)
11956506 .. 11957179
674 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1035200.v1.1.491

Sequence Viewer

Length: 321 bp
ATGGAAGATGCCAGACCTTTATTTGATCAAATTCAGTGCAAGGATCATGTCTCTTGGAATGCAAGGATAACAGGCTATGCACAAAATGGCGGTGGAGAGGAAGCACTCCAGTTACACTCACAAAAGCTTGAGATTGGTCTACATCCAGATAAGTGGACCCTTGTTTCCGTTCTTACTGCCTGTTCTAGTCTTGCATCTCTTAAAAATGGAAGACAAACTCTTCTGCTCATTATTAAACATGGATTTGAATCAAACCTCTCCCTATATAACGCTTTGATTACCATGTACAGCAAATGTGGTGCGATCATTGATGCCGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR

Protein Analysis

107

Amino Acids

11.7

Weight (kDa)

6.04

Isoelectric Point (pI)

28.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 15 - 62 6.3e-06 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016737)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20280
malus_domestica MD01G1035200.v1.1 MD15G1320700.v1.1
prunus_persica Prupe.6G192600_v2.0.a1
pyrus_communis pycom01g06230 pycom15g28170
rosa_chinensis RchiOBHm_Chr2g0112421
rosa_laevigata RLG00000017979
rosa_multiflora Rmu_sc0031542.1_g000001
rosa_rugosa Rorug02G0180400
rosa_samantha Rh2BG247100 Rh2CG238200 Rh2DG241400
rosa_wichuraiana Rw2G018100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 139
AciI CCGC 1 cut(s) 90
AclWI GGATC 1 cut(s) 51
AcsI RAATTY 1 cut(s) 30
AfaI GTAC 1 cut(s) 287
AgsI TTSAA 1 cut(s) 248
AluBI AGCT 1 cut(s) 127
AluI AGCT 1 cut(s) 127
Alw26I GTCTC 1 cut(s) 55
AlwI GGATC 1 cut(s) 51
ApoI RAATTY 1 cut(s) 30
AspS9I GGNCC 1 cut(s) 156
AvaII GGWCC 1 cut(s) 156
BbsI GAAGAC 1 cut(s) 217
BclI TGATCA 1 cut(s) 25
BcoDI GTCTC 1 cut(s) 55
BfaI CTAG 1 cut(s) 186
Bme18I GGWCC 1 cut(s) 156
BmgT120I GGNCC 1 cut(s) 156
BmiI GGNNCC 1 cut(s) 158
BmsI GCATC 2 cut(s) 203, 301
BpiI GAAGAC 1 cut(s) 217
BpmI CTGGAG 1 cut(s) 92
BpuEI CTTGAG 1 cut(s) 149
BsaBI GATNNNNATC 1 cut(s) 247
Bse1I ACTGG 1 cut(s) 109
Bse8I GATNNNNATC 1 cut(s) 247
BseGI GGATG 1 cut(s) 142
BseJI GATNNNNATC 1 cut(s) 247
BseNI ACTGG 1 cut(s) 109
BsmAI GTCTC 1 cut(s) 55
BsmI GAATGC 1 cut(s) 64
Bsp1407I TGTACA 1 cut(s) 285
Bsp143I GATC 3 cut(s) 25, 43, 303
BspACI CCGC 1 cut(s) 90
BspLI GGNNCC 1 cut(s) 158
BspPI GGATC 1 cut(s) 51
BsrGI TGTACA 1 cut(s) 285
BsrI ACTGG 1 cut(s) 109
BssMI GATC 3 cut(s) 25, 43, 303
Bst6I CTCTTC 1 cut(s) 225
BstAUI TGTACA 1 cut(s) 285
BstF5I GGATG 1 cut(s) 142
BstKTI GATC 3 cut(s) 28, 46, 306
BstMAI GTCTC 1 cut(s) 55
BstMBI GATC 3 cut(s) 25, 43, 303
BstV2I GAAGAC 1 cut(s) 217
BstXI CCANNNNNNTGG 1 cut(s) 153
BtsCI GGATG 1 cut(s) 142
BtsIMutI CAGTG 1 cut(s) 41
Cfr13I GGNCC 1 cut(s) 156
Csp6I GTAC 1 cut(s) 286
CviAII CATG 3 cut(s) 47, 239, 283
CviJI RGCY 2 cut(s) 75, 127
CviKI_1 RGCY 2 cut(s) 75, 127
CviQI GTAC 1 cut(s) 286
DpnI GATC 3 cut(s) 27, 45, 305
DpnII GATC 3 cut(s) 25, 43, 303
Eam1104I CTCTTC 1 cut(s) 225
EarI CTCTTC 1 cut(s) 225
Eco47I GGWCC 1 cut(s) 156
FaeI CATG 3 cut(s) 50, 242, 286
FaiI YATR 6 cut(s) 48, 78, 240, 265, 267, 284
FatI CATG 3 cut(s) 46, 238, 282
FbaI TGATCA 1 cut(s) 25
FblI GTMKAC 1 cut(s) 139
FokI GGATG 1 cut(s) 129
FspBI CTAG 1 cut(s) 186
GsuI CTGGAG 1 cut(s) 92
Hin1II CATG 3 cut(s) 50, 242, 286
HindIII AAGCTT 1 cut(s) 125
HinfI GANTC 1 cut(s) 248
Hpy166II GTNNAC 2 cut(s) 140, 156
Hpy188III TCNNGA 1 cut(s) 146
Hpy8I GTNNAC 2 cut(s) 140, 156
HpyCH4V TGCA 4 cut(s) 39, 62, 80, 194
Hsp92II CATG 3 cut(s) 50, 242, 286
Ksp22I TGATCA 1 cut(s) 25
Kzo9I GATC 3 cut(s) 25, 43, 303
LpnPI CCDG 5 cut(s) 25, 57, 122, 159, 193
LweI GCATC 2 cut(s) 203, 301
MaeI CTAG 1 cut(s) 186
MaeIII GTNAC 1 cut(s) 111
MalI GATC 3 cut(s) 27, 45, 305
MboI GATC 3 cut(s) 25, 43, 303
MboII GAAGA 3 cut(s) 17, 212, 222
MluCI AATT 1 cut(s) 30
MnlI CCTC 2 cut(s) 91, 266
MseI TTAA 2 cut(s) 201, 234
Mva1269I GAATGC 1 cut(s) 64
NdeII GATC 3 cut(s) 25, 43, 303
NlaIII CATG 3 cut(s) 50, 242, 286
NlaIV GGNNCC 1 cut(s) 158
PctI GAATGC 1 cut(s) 64
PfeI GAWTC 1 cut(s) 248
PspN4I GGNNCC 1 cut(s) 158
PspPI GGNCC 1 cut(s) 156
RsaI GTAC 1 cut(s) 287
RsaNI GTAC 1 cut(s) 286
SaqAI TTAA 2 cut(s) 201, 234
Sau3AI GATC 3 cut(s) 25, 43, 303
Sau96I GGNCC 1 cut(s) 156
SetI ASST 3 cut(s) 19, 129, 258
SfaNI GCATC 2 cut(s) 203, 301
SinI GGWCC 1 cut(s) 156
SmlI CTYRAG 1 cut(s) 128
SmoI CTYRAG 1 cut(s) 128
Sse9I AATT 1 cut(s) 30
SsiI CCGC 1 cut(s) 90
SspMI CTAG 1 cut(s) 186
TasI AATT 1 cut(s) 30
TatI WGTACW 1 cut(s) 285
TfiI GAWTC 1 cut(s) 248
Tru1I TTAA 2 cut(s) 201, 234
Tru9I TTAA 2 cut(s) 201, 234
TscAI CASTG 1 cut(s) 41
TspGWI ACGGA 1 cut(s) 157
TspRI CASTG 1 cut(s) 41
VpaK11BI GGWCC 1 cut(s) 156
XapI RAATTY 1 cut(s) 30
XmiI GTMKAC 1 cut(s) 139
XspI CTAG 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.