Rh2DG241400

Pentatricopeptide repeat-containing protein At4g02750-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0016737
Physical Location & Seq
Forward (+)
24520360 .. 24522433
2074 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG241400.1

Sequence Viewer

Length: 1779 bp
ATGATGTTGATACTCCTGGGGCTGATGATACTTTTGAGAACTACCGCCCGTTTGAACATCGTTTCATCCGTTTCAGGAGGTTGTTATTACGAACCCCAACGCTTGGTTCCTTCACTGCTCAAGCTTTTCTCAACCCATCATGTATACACTTGCAACGTCAAGATTGGCTCTCTCTTTCGAGCGGGTCATATTGAAGCTGCCCGCCAACTGTTCGACGAAATGCCCCAAAGAGACGTGGTTACATGGAACGCTCTCGTTACTGGGTACTGGAAAAACGGTTACTTTCAGGAATCAAAGAGTCTGTTCGAATCGATGCCTCTCAGGAATGTGGTGTCCTGGAACTCCATGGTAGCCGGGTGCGTCGAAAATGGGATGGTTGATGAGGCCTTCGGCTACTTTCGAGCCATGCCCGAGAGGAACATTGCTTCTTGGAATGCTATGATATCTGGGTTTTTGAAGTGTGATCGGGTGGAGGAAGCTAGTAGGCTTTTTGTGGAGATGCCGTGTAGGAATGTTGTTTCTTATACGGCGATGATTGATGGGTATGCGAAGAAAGGAGAGGTGGAGAAGGCAAGAGCATTGTTTGATGTCATGCCGCGTAAAAATGCGGTTTCTTGGACTGTGCTGATTAGTGTGTATGTGGAGAATGGGAGGTTTGATGAAGCTAGGGAATTGTACAAGCAGATGCCGGAGAAAAATGTGGTTGCAGTGACTGCCATGATCACTGGGTGCTGTAAGGAGGGTAAGATGGAAGATGCGAGAGTGTTGTTCGATGGAATGCAGTTCAAGGATGATGTCTGTTGGAATGCAATGATAACAGGCTATGCACAAAATGGTAGGGGAGAGGAAGCATTGAAGTTACATTCACAAAAGCTCAAGATTGGTTTGCATCCAGATAACTGGACCCTTGTTTCTGTTCTCATGGCCTGTTCTACTCTTGCGTCCCTGAAGGATGGAAGACAAGCTCATGTGCTCATTGTTAAACATGGTCTTGAATCCAATGTCTCCATAAGTAATGCTTTGATTACCATGTACTGCAGATGTGGTGCGATTCTTGACTCTGAGTTAGCTTTCAAACAAATTGAGAGTCCGGACCTTGTCTCATGGAACACCATTGTTGCTGCATTTGCACAGCACGGTCTCTACGAGAAGGCTCTGGCTTTTTTCAACCAGATGAGGGTCAGTGGCTTTGAACCGGATGGCATAACATTTCTTAGTGTCTTATCTGCTTGTGCTCGTGTGGGAAAAGTGAATGAGAGCATGGATTTGTTTGGCTCAATGGTCAATAAATATGGTATTTCCCCTGGGTCGGAGCATTATGCTTGCTTAATTGATCTATTGAGTCGAGCAGGTCAGTTAGAGAAAGCTTGCAAGATGATCCAAGAGATGCCATTTGAAGCAGACTTTGGGATTTGGGGAGCTCTTCTTGCAGCTTCCAGTGTTCATTCAAATGTCGAAATAGGGGAACTGGCTGCTAAGAATATGTTAGACTTGGATCCCCAGAGTTCTGGGCCTTATGTCATATTGTCCAATATGTATGCAGCTGCTGGTAAATGGAATGATGTTGCTAGAGTGAGGAGTTTGATGAAAAAGCATGGAGTCAAGAAGCAACAGGCATATAGTTGGATAGAGATTGGGAATAAGGTGCACAATTTCGTTGGAGGGGATATATCGCATCCAGATGTTGATAATATTCATTTGGTGCTCAAGAAGATCAGCCTGCATATGGCTGCAAATAATTTCACAGACATCAGTGTCTCATGGAGCTCTTCTTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR

Protein Analysis

592

Amino Acids

65.81

Weight (kDa)

6.94

Isoelectric Point (pI)

38.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR PF01535 80 - 109 6e-06 PPR repeat
PPR_2 PF13041 108 - 141 4.3e-06 PPR repeat family
PPR PF01535 111 - 141 2.8e-07 PPR repeat
PPR_2 PF13041 140 - 172 4.4e-07 PPR repeat family
PPR PF01535 143 - 171 1.1e-06 PPR repeat
PPR_2 PF13041 170 - 202 4.5e-08 PPR repeat family
PPR_1 PF12854 170 - 198 6.3e-08 PPR repeat
PPR PF01535 173 - 202 4.8e-08 PPR repeat
PPR_2 PF13041 201 - 234 7.2e-07 PPR repeat family
PPR PF01535 204 - 234 3.7e-08 PPR repeat
PPR_2 PF13041 232 - 262 5.8e-06 PPR repeat family
PPR_2 PF13041 264 - 310 1.2e-07 PPR repeat family
PPR PF01535 266 - 290 1.8e-06 PPR repeat
PPR_2 PF13041 364 - 413 6.3e-12 PPR repeat family
PPR PF01535 367 - 397 5.1e-07 PPR repeat
E_motif PF20431 482 - 544 1.2e-21 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016737)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g20280
malus_domestica MD01G1035200.v1.1 MD15G1320700.v1.1
prunus_persica Prupe.6G192600_v2.0.a1
pyrus_communis pycom01g06230 pycom15g28170
rosa_chinensis RchiOBHm_Chr2g0112421
rosa_laevigata RLG00000017979
rosa_multiflora Rmu_sc0031542.1_g000001
rosa_rugosa Rorug02G0180400
rosa_samantha Rh2BG247100 Rh2CG238200 Rh2DG241400
rosa_wichuraiana Rw2G018100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1754
Acc36I ACCTGC 1 cut(s) 1340
AccB7I CCANNNNNTGG 1 cut(s) 103
AccBSI CCGCTC 1 cut(s) 182
AccI GTMKAC 1 cut(s) 144
AccII CGCG 1 cut(s) 598
AccIII TCCGGA 1 cut(s) 1090
AciI CCGC 5 cut(s) 45, 182, 202, 596, 608
AclWI GGATC 3 cut(s) 1372, 1490, 1503
AcuI CTGAAG 1 cut(s) 968
AdeI CACNNNGTG 1 cut(s) 729
AfaI GTAC 3 cut(s) 266, 677, 1034
AfiI CCNNNNNNNGG 4 cut(s) 103, 1177, 1309, 1726
AjiI CACGTC 1 cut(s) 235
AjnI CCWGG 3 cut(s) 15, 335, 1303
AjuI GAANNNNNNNTTGG 4 cut(s) 90, 122, 1389, 1421
Alw21I GWGCWC 6 cut(s) 975, 1237, 1423, 1650, 1707, 1769
Alw26I GTCTC 5 cut(s) 225, 1009, 1105, 1145, 1762
Alw44I GTGCAC 1 cut(s) 1646
AlwI GGATC 3 cut(s) 1372, 1490, 1503
AlwNI CAGNNNCTG 2 cut(s) 713, 1547
Ama87I CYCGRG 1 cut(s) 410
Aor13HI TCCGGA 1 cut(s) 1090
AoxI GGCC 3 cut(s) 384, 924, 1511
ApaLI GTGCAC 1 cut(s) 1646
ApeKI GCWGC 7 cut(s) 197, 1121, 1430, 1472, 1541, 1544, 1730
ArsI GACNNNNNNTTYG 2 cut(s) 1072, 1104
AspS9I GGNCC 3 cut(s) 903, 1093, 1511
AsuC2I CCSGG 1 cut(s) 355
AsuII TTCGAA 1 cut(s) 306
AvaI CYCGRG 1 cut(s) 410
AvaII GGWCC 2 cut(s) 903, 1093
BaeGI GKGCMC 1 cut(s) 1650
BamHI GGATCC 1 cut(s) 1495
BanII GRGCYC 2 cut(s) 1423, 1769
BauI CACGAG 1 cut(s) 1236
BbsI GAAGAC 1 cut(s) 964
Bbv12I GWGCWC 6 cut(s) 975, 1237, 1423, 1650, 1707, 1769
BbvI GCAGC 7 cut(s) 184, 1108, 1442, 1459, 1531, 1553, 1717
BccI CCATC 7 cut(s) 144, 367, 533, 742, 767, 947, 1193
BceAI ACGGC 2 cut(s) 487, 543
BciT130I CCWGG 3 cut(s) 17, 337, 1305
BclI TGATCA 1 cut(s) 720
BcnI CCSGG 1 cut(s) 355
BcoDI GTCTC 5 cut(s) 225, 1009, 1105, 1145, 1762
BfaI CTAG 3 cut(s) 480, 666, 1569
BfmI CTRYAG 1 cut(s) 1036
BfuAI ACCTGC 1 cut(s) 1340
BisI GCNGC 8 cut(s) 198, 596, 1122, 1431, 1473, 1542, 1545, 1731
BlsI GCNGC 8 cut(s) 199, 597, 1123, 1432, 1474, 1543, 1546, 1732
Bme1390I CCNGG 4 cut(s) 17, 337, 355, 1305
Bme18I GGWCC 2 cut(s) 903, 1093
BmeT110I CYCGRG 1 cut(s) 410
BmgBI CACGTC 1 cut(s) 235
BmgT120I GGNCC 3 cut(s) 903, 1093, 1511
BmiI GGNNCC 3 cut(s) 108, 905, 1497
BmrFI CCNGG 4 cut(s) 17, 337, 355, 1305
BmrI ACTGGG 2 cut(s) 270, 735
BmsI GCATC 7 cut(s) 303, 489, 675, 745, 898, 1377, 1684
BmuI ACTGGG 2 cut(s) 270, 735
BpiI GAAGAC 1 cut(s) 964
Bpu14I TTCGAA 1 cut(s) 306
BpuEI CTTGAG 3 cut(s) 104, 860, 1691
BpuMI CCSGG 1 cut(s) 355
Bsa29I ATCGAT 1 cut(s) 311
BsaI GGTCTC 1 cut(s) 1145
BsaJI CCNNGG 4 cut(s) 16, 345, 1303, 1304
BsaWI WCCGGW 2 cut(s) 1090, 1195
BsaXI ACNNNNNCTCC 2 cut(s) 488, 518
Bsc4I CCNNNNNNNGG 4 cut(s) 103, 1177, 1309, 1726
Bse1I ACTGG 6 cut(s) 265, 272, 730, 905, 1437, 1473
Bse3DI GCAATG 2 cut(s) 420, 816
BseAI TCCGGA 1 cut(s) 1090
BseBI CCWGG 3 cut(s) 17, 337, 1305
BseCI ATCGAT 1 cut(s) 311
BseDI CCNNGG 4 cut(s) 16, 345, 1303, 1304
BseGI GGATG 7 cut(s) 65, 378, 796, 889, 958, 1204, 1675
BseLI CCNNNNNNNGG 4 cut(s) 103, 1177, 1309, 1726
BseMI GCAATG 2 cut(s) 420, 816
BseMII CTCAG 2 cut(s) 334, 1053
BseNI ACTGG 6 cut(s) 265, 272, 730, 905, 1437, 1473
BseRI GAGGAG 1 cut(s) 1591
BseSI GKGCMC 1 cut(s) 1650
BseXI GCAGC 7 cut(s) 184, 1108, 1442, 1459, 1531, 1553, 1717
Bsh1236I CGCG 1 cut(s) 598
BshFI GGCC 3 cut(s) 386, 926, 1513
BshVI ATCGAT 1 cut(s) 311
BsiHKAI GWGCWC 6 cut(s) 975, 1237, 1423, 1650, 1707, 1769
BsiHKCI CYCGRG 1 cut(s) 410
BsiSI CCGG 4 cut(s) 354, 689, 1091, 1196
BslFI GGGAC 1 cut(s) 928
BslI CCNNNNNNNGG 4 cut(s) 103, 1177, 1309, 1726
BsmAI GTCTC 5 cut(s) 225, 1009, 1105, 1145, 1762
BsmBI CGTCTC 1 cut(s) 225
BsmFI GGGAC 1 cut(s) 928
BsmI GAATGC 3 cut(s) 439, 783, 811
BsnI GGCC 3 cut(s) 386, 926, 1513
Bso31I GGTCTC 1 cut(s) 1145
BsoBI CYCGRG 1 cut(s) 410
Bsp119I TTCGAA 1 cut(s) 306
Bsp1286I GDGCHC 6 cut(s) 975, 1237, 1423, 1650, 1707, 1769
Bsp13I TCCGGA 1 cut(s) 1090
Bsp1407I TGTACA 1 cut(s) 675
Bsp143I GATC 6 cut(s) 463, 720, 1333, 1377, 1495, 1713
Bsp19I CCATGG 1 cut(s) 345
BspACI CCGC 5 cut(s) 45, 182, 202, 596, 608
BspANI GGCC 3 cut(s) 386, 926, 1513
BspCNI CTCAG 2 cut(s) 333, 1054
BspDI ATCGAT 1 cut(s) 311
BspEI TCCGGA 1 cut(s) 1090
BspFNI CGCG 1 cut(s) 598
BspLI GGNNCC 3 cut(s) 108, 905, 1497
BspMAI CTGCAG 1 cut(s) 1040
BspMI ACCTGC 1 cut(s) 1340
BspPI GGATC 3 cut(s) 1372, 1490, 1503
BspQI GCTCTTC 2 cut(s) 1428, 1774
BspT104I TTCGAA 1 cut(s) 306
BspTNI GGTCTC 1 cut(s) 1145
BsrBI CCGCTC 1 cut(s) 182
BsrDI GCAATG 2 cut(s) 420, 816
BsrGI TGTACA 1 cut(s) 675
BsrI ACTGG 6 cut(s) 265, 272, 730, 905, 1437, 1473
BssECI CCNNGG 4 cut(s) 16, 345, 1303, 1304
BssMI GATC 6 cut(s) 463, 720, 1333, 1377, 1495, 1713
BssNAI GTATAC 1 cut(s) 145
BssSI CACGAG 1 cut(s) 1236
BssT1I CCWWGG 1 cut(s) 345
Bst1107I GTATAC 1 cut(s) 145
Bst2BI CACGAG 1 cut(s) 1236
Bst2UI CCWGG 3 cut(s) 17, 337, 1305
Bst4CI ACNGT 4 cut(s) 210, 278, 622, 1139
Bst6I CTCTTC 2 cut(s) 1428, 1774
BstAPI GCANNNNNTGC 1 cut(s) 713
BstAUI TGTACA 1 cut(s) 675
BstBI TTCGAA 1 cut(s) 306
BstC8I GCNNGC 4 cut(s) 202, 1324, 1369, 1721
BstDEI CTNAG 4 cut(s) 320, 1062, 1214, 1476
BstDSI CCRYGG 1 cut(s) 345
BstF5I GGATG 7 cut(s) 65, 378, 796, 889, 958, 1204, 1675
BstFNI CGCG 1 cut(s) 598
BstKTI GATC 6 cut(s) 466, 723, 1336, 1380, 1498, 1716
BstMAI GTCTC 5 cut(s) 225, 1009, 1105, 1145, 1762
BstMBI GATC 6 cut(s) 463, 720, 1333, 1377, 1495, 1713
BstMWI GCNNNNNNNGC 3 cut(s) 713, 1127, 1427
BstNI CCWGG 3 cut(s) 17, 337, 1305
BstSCI CCNGG 4 cut(s) 15, 335, 353, 1303
BstSFI CTRYAG 1 cut(s) 1036
BstSLI GKGCMC 1 cut(s) 1650
BstUI CGCG 1 cut(s) 598
BstV1I GCAGC 7 cut(s) 184, 1108, 1442, 1459, 1531, 1553, 1717
BstV2I GAAGAC 1 cut(s) 964
BstX2I RGATCY 1 cut(s) 1495
BstXI CCANNNNNNTGG 2 cut(s) 900, 1508
BstYI RGATCY 1 cut(s) 1495
BstZ17I GTATAC 1 cut(s) 145
Bsu15I ATCGAT 1 cut(s) 311
BsuRI GGCC 3 cut(s) 386, 926, 1513
BsuTUI ATCGAT 1 cut(s) 311
BtgI CCRYGG 1 cut(s) 345
BtgZI GCGATG 1 cut(s) 545
BtrI CACGTC 1 cut(s) 235
BtsCI GGATG 7 cut(s) 65, 378, 796, 889, 958, 1204, 1675
BtsI GCAGTG 2 cut(s) 113, 714
BtsIMutI CAGTG 6 cut(s) 113, 714, 723, 1189, 1444, 1759
BveI ACCTGC 1 cut(s) 1340
Cac8I GCNNGC 4 cut(s) 202, 1324, 1369, 1721
CaiI CAGNNNCTG 2 cut(s) 713, 1547
Cfr13I GGNCC 3 cut(s) 903, 1093, 1511
ClaI ATCGAT 1 cut(s) 311
CseI GACGC 2 cut(s) 349, 930
Csp6I GTAC 3 cut(s) 265, 676, 1033
CviQI GTAC 3 cut(s) 265, 676, 1033
DdeI CTNAG 4 cut(s) 320, 1062, 1214, 1476
DpnI GATC 6 cut(s) 465, 722, 1335, 1379, 1497, 1715
DpnII GATC 6 cut(s) 463, 720, 1333, 1377, 1495, 1713
DraIII CACNNNGTG 1 cut(s) 729
DrdI GACNNNNNNGTC 1 cut(s) 1754
DseDI GACNNNNNNGTC 1 cut(s) 1754
Eam1104I CTCTTC 2 cut(s) 1428, 1774
EarI CTCTTC 2 cut(s) 1428, 1774
Ecl136II GAGCTC 2 cut(s) 1421, 1767
Eco130I CCWWGG 1 cut(s) 345
Eco147I AGGCCT 1 cut(s) 386
Eco24I GRGCYC 2 cut(s) 1423, 1769
Eco31I GGTCTC 1 cut(s) 1145
Eco32I GATATC 1 cut(s) 444
Eco47I GGWCC 2 cut(s) 903, 1093
Eco53kI GAGCTC 2 cut(s) 1421, 1767
Eco57I CTGAAG 1 cut(s) 968
Eco88I CYCGRG 1 cut(s) 410
EcoICRI GAGCTC 2 cut(s) 1421, 1767
EcoRII CCWGG 3 cut(s) 15, 335, 1303
EcoRV GATATC 1 cut(s) 444
EcoT14I CCWWGG 1 cut(s) 345
EcoT38I GRGCYC 2 cut(s) 1423, 1769
ErhI CCWWGG 1 cut(s) 345
Esp3I CGTCTC 1 cut(s) 225
FalI AAGNNNNNCTT 2 cut(s) 1003, 1035
FaqI GGGAC 1 cut(s) 928
FauI CCCGC 2 cut(s) 175, 209
FauNDI CATATG 1 cut(s) 1725
FbaI TGATCA 1 cut(s) 720
FblI GTMKAC 1 cut(s) 144
Fnu4HI GCNGC 8 cut(s) 198, 596, 1122, 1431, 1473, 1542, 1545, 1731
FokI GGATG 7 cut(s) 52, 385, 803, 876, 965, 1211, 1662
FriOI GRGCYC 2 cut(s) 1423, 1769
Fsp4HI GCNGC 8 cut(s) 198, 596, 1122, 1431, 1473, 1542, 1545, 1731
FspBI CTAG 3 cut(s) 480, 666, 1569
GluI GCNGC 8 cut(s) 198, 596, 1122, 1431, 1473, 1542, 1545, 1731
HaeIII GGCC 3 cut(s) 386, 926, 1513
HapII CCGG 4 cut(s) 354, 689, 1091, 1196
HgaI GACGC 2 cut(s) 349, 930
HindIII AAGCTT 2 cut(s) 122, 1365
HinfI GANTC 9 cut(s) 290, 298, 308, 995, 1051, 1058, 1087, 1342, 1599
HpaII CCGG 4 cut(s) 354, 689, 1091, 1196
Hpy166II GTNNAC 2 cut(s) 145, 1648
Hpy188I TCNGA 2 cut(s) 1063, 1312
Hpy8I GTNNAC 2 cut(s) 145, 1648
Hpy99I CGWCG 2 cut(s) 218, 365
HpyAV CCTTC 5 cut(s) 120, 397, 562, 943, 1144
HpyCH4III ACNGT 4 cut(s) 210, 278, 622, 1139
HpyCH4IV ACGT 2 cut(s) 156, 234
HpyF10VI GCNNNNNNNGC 3 cut(s) 713, 1127, 1427
HpyF3I CTNAG 4 cut(s) 320, 1062, 1214, 1476
HpySE526I ACGT 2 cut(s) 156, 234
Kpn2I TCCGGA 1 cut(s) 1090
Ksp22I TGATCA 1 cut(s) 720
Kzo9I GATC 6 cut(s) 463, 720, 1333, 1377, 1495, 1713
LguI GCTCTTC 2 cut(s) 1428, 1774
LmnI GCTCC 3 cut(s) 1312, 1418, 1764
Lsp1109I GCAGC 7 cut(s) 184, 1108, 1442, 1459, 1531, 1553, 1717
LweI GCATC 7 cut(s) 303, 489, 675, 745, 898, 1377, 1684
MaeI CTAG 3 cut(s) 480, 666, 1569
MaeII ACGT 2 cut(s) 156, 234
MaeIII GTNAC 5 cut(s) 238, 256, 278, 709, 858
MalI GATC 6 cut(s) 465, 722, 1335, 1379, 1497, 1715
MbiI CCGCTC 1 cut(s) 182
MboI GATC 6 cut(s) 463, 720, 1333, 1377, 1495, 1713
MboII GAAGA 6 cut(s) 562, 764, 969, 1415, 1723, 1761
MflI RGATCY 1 cut(s) 1495
MhlI GDGCHC 6 cut(s) 975, 1237, 1423, 1650, 1707, 1769
MluCI AATT 5 cut(s) 671, 1080, 1329, 1651, 1738
MlyI GAGTC 5 cut(s) 307, 1052, 1096, 1351, 1608
MmeI TCCRAC 4 cut(s) 782, 1290, 1604, 1639
MroI TCCGGA 1 cut(s) 1090
MseI TTAA 3 cut(s) 981, 1328, 1777
MslI CAYNNNNRTG 2 cut(s) 1449, 1680
MspA1I CMGCKG 1 cut(s) 1544
MspI CCGG 4 cut(s) 354, 689, 1091, 1196
MspR9I CCNGG 4 cut(s) 17, 337, 355, 1305
Mva1269I GAATGC 3 cut(s) 439, 783, 811
MvaI CCWGG 3 cut(s) 17, 337, 1305
MvnI CGCG 1 cut(s) 598
MwoI GCNNNNNNNGC 3 cut(s) 713, 1127, 1427
NciI CCSGG 1 cut(s) 355
NcoI CCATGG 1 cut(s) 345
NdeI CATATG 1 cut(s) 1725
NdeII GATC 6 cut(s) 463, 720, 1333, 1377, 1495, 1713
NlaIV GGNNCC 3 cut(s) 108, 905, 1497
NmuCI GTSAC 1 cut(s) 709
NspV TTCGAA 1 cut(s) 306
PasI CCCWGGG 1 cut(s) 1304
PceI AGGCCT 1 cut(s) 386
PciSI GCTCTTC 2 cut(s) 1428, 1774
PcsI WCGNNNNNNNCGW 2 cut(s) 66, 1143
PctI GAATGC 3 cut(s) 439, 783, 811
PfeI GAWTC 4 cut(s) 290, 308, 995, 1051
PflFI GACNNNGTC 1 cut(s) 1097
PflMI CCANNNNNTGG 1 cut(s) 103
PfoI TCCNGGA 1 cut(s) 335
PkrI GCNGC 8 cut(s) 199, 597, 1123, 1432, 1474, 1543, 1546, 1732
PleI GAGTC 5 cut(s) 306, 1052, 1095, 1350, 1607
PpsI GAGTC 5 cut(s) 306, 1052, 1095, 1350, 1607
Psp124BI GAGCTC 2 cut(s) 1423, 1769
Psp6I CCWGG 3 cut(s) 15, 335, 1303
PspGI CCWGG 3 cut(s) 15, 335, 1303
PspN4I GGNNCC 3 cut(s) 108, 905, 1497
PspPI GGNCC 3 cut(s) 903, 1093, 1511
PstI CTGCAG 1 cut(s) 1040
PstNI CAGNNNCTG 2 cut(s) 713, 1547
PsuI RGATCY 1 cut(s) 1495
PsyI GACNNNGTC 1 cut(s) 1097
PvuII CAGCTG 1 cut(s) 1544
RsaI GTAC 3 cut(s) 266, 677, 1034
RsaNI GTAC 3 cut(s) 265, 676, 1033
RseI CAYNNNNRTG 2 cut(s) 1449, 1680
SacI GAGCTC 2 cut(s) 1423, 1769
SapI GCTCTTC 2 cut(s) 1428, 1774
SaqAI TTAA 3 cut(s) 981, 1328, 1777
SatI GCNGC 8 cut(s) 198, 596, 1122, 1431, 1473, 1542, 1545, 1731
Sau3AI GATC 6 cut(s) 463, 720, 1333, 1377, 1495, 1713
Sau96I GGNCC 3 cut(s) 903, 1093, 1511
SchI GAGTC 5 cut(s) 307, 1052, 1096, 1351, 1608
ScrFI CCNGG 4 cut(s) 17, 337, 355, 1305
SduI GDGCHC 6 cut(s) 975, 1237, 1423, 1650, 1707, 1769
SfaNI GCATC 7 cut(s) 303, 489, 675, 745, 898, 1377, 1684
SfcI CTRYAG 1 cut(s) 1036
SfuI TTCGAA 1 cut(s) 306
SinI GGWCC 2 cut(s) 903, 1093
SmiMI CAYNNNNRTG 2 cut(s) 1449, 1680
SmlI CTYRAG 3 cut(s) 119, 875, 1706
SmoI CTYRAG 3 cut(s) 119, 875, 1706
Sse9I AATT 5 cut(s) 671, 1080, 1329, 1651, 1738
SseBI AGGCCT 1 cut(s) 386
SsiI CCGC 5 cut(s) 45, 182, 202, 596, 608
SspI AATATT 1 cut(s) 1693
SspMI CTAG 3 cut(s) 480, 666, 1569
SstI GAGCTC 2 cut(s) 1423, 1769
StuI AGGCCT 1 cut(s) 386
StyD4I CCNGG 4 cut(s) 15, 335, 353, 1303
StyI CCWWGG 1 cut(s) 345
TaaI ACNGT 4 cut(s) 210, 278, 622, 1139
TaiI ACGT 2 cut(s) 159, 237
TaqI TCGA 9 cut(s) 178, 213, 306, 311, 363, 400, 771, 1345, 1455
TasI AATT 5 cut(s) 671, 1080, 1329, 1651, 1738
TatI WGTACW 2 cut(s) 675, 1032
TauI GCSGC 1 cut(s) 598
TfiI GAWTC 4 cut(s) 290, 308, 995, 1051
Tru1I TTAA 3 cut(s) 981, 1328, 1777
Tru9I TTAA 3 cut(s) 981, 1328, 1777
TscAI CASTG 6 cut(s) 120, 714, 730, 1189, 1444, 1759
TseFI GTSAC 1 cut(s) 709
TseI GCWGC 7 cut(s) 197, 1121, 1430, 1472, 1541, 1544, 1730
Tsp45I GTSAC 1 cut(s) 709
TspDTI ATGAA 5 cut(s) 54, 675, 1433, 1601, 1685
TspGWI ACGGA 1 cut(s) 58
TspRI CASTG 6 cut(s) 120, 714, 730, 1189, 1444, 1759
Tth111I GACNNNGTC 1 cut(s) 1097
Van91I CCANNNNNTGG 1 cut(s) 103
VneI GTGCAC 1 cut(s) 1646
VpaK11BI GGWCC 2 cut(s) 903, 1093
XmiI GTMKAC 1 cut(s) 144
XspI CTAG 3 cut(s) 480, 666, 1569
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.