Rorug02G0180400

Pentatricopeptide repeat-containing protein At4g02750-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0009505
Physical Location & Seq
Forward (+)
16713988 .. 16716821
2834 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0180400.1

Sequence Viewer

Length: 717 bp
ATGACTGCTGATAAAGGATACAGAGGGTATCAGAGAATCGGGGAGAATATAACCAAAGGTGTACCAGACATACATGAAGCAATTGATTGCTATAAAGAAGTGAAACCAGGAATGTACGGAGATCTTGGAAAACCTATGGAAGGATGTAACCAATGGCCAACTAATCCCCCAAACTTCAAGCTACTGATGGAGGAATATATCAGCCTCTGCACAGAACTTTCAAAAAATATCATGCGTGGAATTGCTTTAGCATTGGGTGGATCTCCATATGAATTTGAAGGTGAAAGAGCTGGAGACGCATTTTGGGTGATGCGTCTCATTGGTTACCCAGAGTTACACAATGACATTGGATGTGGAGCTCACACGGATTATGGTTTGCTGACACTGGTTAATCAGGATGATGATATAAATGCACTTCAGGTGAGAAACCTGTCGGGCGAGTGGATATCAGCACCTCCTGTTCCCGGAACATTCGTCTGCAATATCGGAGACATGCTAAAGATTTACTCGAATGGTTTGTATGAGTCAACTTTGCATCAAGTTATCAACTCTTCCCCGAAATACAGGGTTTGTGTAGCATATTTCTATGAGACCAACTTTGATACAGCAGTGGAGCCTTTGGACATTTGCAAACAGAAGACAGGTGGAGCTAAGAAATTTGAAAGAGCCGTATATGGAGAGCATTTAGTCAGCAAGGTTCAAACAAATTTCGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR

Protein Analysis

238

Amino Acids

26.57

Weight (kDa)

5.17

Isoelectric Point (pI)

17.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2OG-FeII_Oxy PF03171 110 - 197 2.1e-20 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 268
AcoI YGGCCR 1 cut(s) 155
AcsI RAATTY 3 cut(s) 272, 656, 706
AcuI CTGAAG 1 cut(s) 401
AfaI GTAC 2 cut(s) 63, 116
AfiI CCNNNNNNNGG 2 cut(s) 140, 464
AgsI TTSAA 5 cut(s) 178, 222, 278, 662, 701
AjnI CCWGG 1 cut(s) 106
AluBI AGCT 4 cut(s) 181, 290, 359, 650
AluI AGCT 4 cut(s) 181, 290, 359, 650
Alw21I GWGCWC 1 cut(s) 361
Alw26I GTCTC 4 cut(s) 288, 320, 483, 584
AlwI GGATC 1 cut(s) 268
AlwNI CAGNNNCTG 1 cut(s) 207
AoxI GGCC 1 cut(s) 155
ApoI RAATTY 3 cut(s) 272, 656, 706
AsuC2I CCSGG 1 cut(s) 465
AsuHPI GGTGA 3 cut(s) 293, 319, 433
BaeI ACNNNNGTAYC 2 cut(s) 594, 627
BalI TGGCCA 1 cut(s) 157
BanII GRGCYC 1 cut(s) 361
BbsI GAAGAC 1 cut(s) 644
Bbv12I GWGCWC 1 cut(s) 361
BccI CCATC 1 cut(s) 181
BceAI ACGGC 1 cut(s) 653
BciT130I CCWGG 1 cut(s) 108
BciVI GTATCC 1 cut(s) 11
BcnI CCSGG 1 cut(s) 465
BcoDI GTCTC 4 cut(s) 288, 320, 483, 584
BfuI GTATCC 1 cut(s) 11
BglII AGATCT 1 cut(s) 121
Bme1390I CCNGG 2 cut(s) 108, 465
BmiI GGNNCC 1 cut(s) 615
BmrFI CCNGG 2 cut(s) 108, 465
BmsI GCATC 2 cut(s) 300, 544
BpiI GAAGAC 1 cut(s) 644
BpmI CTGGAG 1 cut(s) 312
BpuMI CCSGG 1 cut(s) 465
BsaI GGTCTC 1 cut(s) 584
Bsc4I CCNNNNNNNGG 2 cut(s) 140, 464
Bse1I ACTGG 1 cut(s) 390
BseBI CCWGG 1 cut(s) 108
BseGI GGATG 3 cut(s) 149, 356, 403
BseLI CCNNNNNNNGG 2 cut(s) 140, 464
BseNI ACTGG 1 cut(s) 390
BsgI GTGCAG 1 cut(s) 193
BshFI GGCC 1 cut(s) 157
BsiHKAI GWGCWC 1 cut(s) 361
BsiSI CCGG 1 cut(s) 465
BslI CCNNNNNNNGG 2 cut(s) 140, 464
BsmAI GTCTC 4 cut(s) 288, 320, 483, 584
BsmBI CGTCTC 2 cut(s) 288, 320
BsnI GGCC 1 cut(s) 157
Bso31I GGTCTC 1 cut(s) 584
Bsp1286I GDGCHC 1 cut(s) 361
Bsp143I GATC 2 cut(s) 121, 260
BspANI GGCC 1 cut(s) 157
BspLI GGNNCC 1 cut(s) 615
BspPI GGATC 1 cut(s) 268
BspTNI GGTCTC 1 cut(s) 584
BsrI ACTGG 1 cut(s) 390
BssMI GATC 2 cut(s) 121, 260
Bst2UI CCWGG 1 cut(s) 108
Bst6I CTCTTC 1 cut(s) 556
BstDEI CTNAG 1 cut(s) 651
BstEII GGTNACC 1 cut(s) 323
BstENI CCTNNNNNAGG 1 cut(s) 138
BstF5I GGATG 3 cut(s) 149, 356, 403
BstKTI GATC 2 cut(s) 124, 263
BstMAI GTCTC 4 cut(s) 288, 320, 483, 584
BstMBI GATC 2 cut(s) 121, 260
BstMWI GCNNNNNNNGC 1 cut(s) 296
BstNI CCWGG 1 cut(s) 108
BstNSI RCATGY 1 cut(s) 496
BstPI GGTNACC 1 cut(s) 323
BstSCI CCNGG 2 cut(s) 106, 463
BstV2I GAAGAC 1 cut(s) 644
BstX2I RGATCY 2 cut(s) 121, 260
BstYI RGATCY 2 cut(s) 121, 260
BsuI GTATCC 1 cut(s) 11
BsuRI GGCC 1 cut(s) 157
BtsCI GGATG 3 cut(s) 149, 356, 403
BtsI GCAGTG 1 cut(s) 615
BtsIMutI CAGTG 2 cut(s) 383, 615
CaiI CAGNNNCTG 1 cut(s) 207
CseI GACGC 2 cut(s) 302, 305
Csp6I GTAC 2 cut(s) 62, 115
CviAII CATG 3 cut(s) 74, 232, 493
CviJI RGCY 8 cut(s) 157, 181, 204, 290, 359, 616, 650, 668
CviKI_1 RGCY 8 cut(s) 157, 181, 204, 290, 359, 616, 650, 668
CviQI GTAC 2 cut(s) 62, 115
DdeI CTNAG 1 cut(s) 651
DpnI GATC 2 cut(s) 123, 262
DpnII GATC 2 cut(s) 121, 260
EaeI YGGCCR 1 cut(s) 155
Eam1104I CTCTTC 1 cut(s) 556
EarI CTCTTC 1 cut(s) 556
Ecl136II GAGCTC 1 cut(s) 359
Eco24I GRGCYC 1 cut(s) 361
Eco31I GGTCTC 1 cut(s) 584
Eco32I GATATC 1 cut(s) 447
Eco53kI GAGCTC 1 cut(s) 359
Eco57I CTGAAG 1 cut(s) 401
Eco91I GGTNACC 1 cut(s) 323
EcoICRI GAGCTC 1 cut(s) 359
EcoNI CCTNNNNNAGG 1 cut(s) 138
EcoO65I GGTNACC 1 cut(s) 323
EcoRII CCWGG 1 cut(s) 106
EcoRV GATATC 1 cut(s) 447
EcoT38I GRGCYC 1 cut(s) 361
Esp3I CGTCTC 2 cut(s) 288, 320
FaeI CATG 3 cut(s) 77, 235, 496
FatI CATG 3 cut(s) 73, 231, 492
FauNDI CATATG 1 cut(s) 268
FokI GGATG 3 cut(s) 156, 363, 410
FriOI GRGCYC 1 cut(s) 361
GsuI CTGGAG 1 cut(s) 312
HaeIII GGCC 1 cut(s) 157
HapII CCGG 1 cut(s) 465
HgaI GACGC 2 cut(s) 302, 305
Hin1II CATG 3 cut(s) 77, 235, 496
HincII GTYRAC 1 cut(s) 528
HindII GTYRAC 1 cut(s) 528
HinfI GANTC 2 cut(s) 36, 524
HpaII CCGG 1 cut(s) 465
HphI GGTGA 3 cut(s) 293, 319, 433
Hpy166II GTNNAC 2 cut(s) 62, 528
Hpy188I TCNGA 2 cut(s) 33, 488
Hpy188III TCNNGA 1 cut(s) 395
Hpy8I GTNNAC 2 cut(s) 62, 528
HpyAV CCTTC 2 cut(s) 134, 272
HpyCH4V TGCA 5 cut(s) 210, 413, 480, 535, 630
HpyF10VI GCNNNNNNNGC 1 cut(s) 296
HpyF3I CTNAG 1 cut(s) 651
Hsp92II CATG 3 cut(s) 77, 235, 496
Kzo9I GATC 2 cut(s) 121, 260
LmnI GCTCC 3 cut(s) 356, 613, 647
LweI GCATC 2 cut(s) 300, 544
MaeIII GTNAC 3 cut(s) 146, 323, 333
MalI GATC 2 cut(s) 123, 262
MboI GATC 2 cut(s) 121, 260
MboII GAAGA 2 cut(s) 543, 649
MfeI CAATTG 1 cut(s) 81
MflI RGATCY 2 cut(s) 121, 260
MhlI GDGCHC 1 cut(s) 361
MlsI TGGCCA 1 cut(s) 157
MluCI AATT 5 cut(s) 81, 240, 272, 656, 706
MluNI TGGCCA 1 cut(s) 157
MlyI GAGTC 1 cut(s) 533
MnlI CCTC 4 cut(s) 17, 184, 215, 465
Mox20I TGGCCA 1 cut(s) 157
MscI TGGCCA 1 cut(s) 157
MseI TTAA 1 cut(s) 390
Msp20I TGGCCA 1 cut(s) 157
MspI CCGG 1 cut(s) 465
MspR9I CCNGG 2 cut(s) 108, 465
MunI CAATTG 1 cut(s) 81
MvaI CCWGG 1 cut(s) 108
MwoI GCNNNNNNNGC 1 cut(s) 296
NciI CCSGG 1 cut(s) 465
NdeI CATATG 1 cut(s) 268
NdeII GATC 2 cut(s) 121, 260
NlaIII CATG 3 cut(s) 77, 235, 496
NlaIV GGNNCC 1 cut(s) 615
NspI RCATGY 1 cut(s) 496
PfeI GAWTC 1 cut(s) 36
PfoI TCCNGGA 1 cut(s) 463
PleI GAGTC 1 cut(s) 532
PpsI GAGTC 1 cut(s) 532
Psp124BI GAGCTC 1 cut(s) 361
Psp6I CCWGG 1 cut(s) 106
PspEI GGTNACC 1 cut(s) 323
PspGI CCWGG 1 cut(s) 106
PspN4I GGNNCC 1 cut(s) 615
PstNI CAGNNNCTG 1 cut(s) 207
PsuI RGATCY 2 cut(s) 121, 260
RsaI GTAC 2 cut(s) 63, 116
RsaNI GTAC 2 cut(s) 62, 115
SacI GAGCTC 1 cut(s) 361
SaqAI TTAA 1 cut(s) 390
Sau3AI GATC 2 cut(s) 121, 260
SchI GAGTC 1 cut(s) 533
ScrFI CCNGG 2 cut(s) 108, 465
SduI GDGCHC 1 cut(s) 361
SfaNI GCATC 2 cut(s) 300, 544
Sse9I AATT 5 cut(s) 81, 240, 272, 656, 706
SstI GAGCTC 1 cut(s) 361
StyD4I CCNGG 2 cut(s) 106, 463
TaqI TCGA 1 cut(s) 509
TasI AATT 5 cut(s) 81, 240, 272, 656, 706
TfiI GAWTC 1 cut(s) 36
Tru1I TTAA 1 cut(s) 390
Tru9I TTAA 1 cut(s) 390
TscAI CASTG 2 cut(s) 390, 615
TspDTI ATGAA 2 cut(s) 90, 285
TspGWI ACGGA 2 cut(s) 132, 380
TspRI CASTG 2 cut(s) 390, 615
XagI CCTNNNNNAGG 1 cut(s) 138
XapI RAATTY 3 cut(s) 272, 656, 706
XceI RCATGY 1 cut(s) 496
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.