MD01G1170200.v1.1

Inorganic phosphate transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0001012
Physical Location & Seq
Reverse (-)
27370604 .. 27371815
1212 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1170200.v1.1.491

Sequence Viewer

Length: 816 bp
ATGCCCGAGACTGCAAGGTACACTGCCTTGGATGCAGGAGGTCATGACAAGGCCAATGCAGACATGGCTAAAGTCCTCGAAAGGGACATACCGGTCGGAGAATCTGGTACCAAACCCCTAGTTGATCCAAATTCCGCATATGAATTGTTTTCTAGGGAGTTTCTTAGGCGGCACGGCACACATCTTCTCGGTACCGCCACCACCTGGTTCTTACTAGACATTGCATTTTACAGCCTCCAGCTAACTCAGAAGGATATTTATCCTTCCATTGCTCGGGGGTTTGTACTGATGTCGATTTTCATGGGAGTTCTAGGGTTTCAGTACGGAAATCTTAGGGGAGAGGAGTGTGAGATAAAAACTCCACCTTTGAGTTCTGCAAGGGTCACACCAAATTGTTCACTTTGTTATATGGGCTGGCATTTTTTTTTTGCAAACTTTGGACCCAACAGTACGGCTTCCATCGTGTCAGCCGAGCTTTTCCCGGCTAGATTTTGGTTCACATGCCACGAGGTGTCAGCGGCCGCGGGCAAAGCGGGGGCTATACTTGCTGCATTTGTGCTGCAGAATTACACTCATGAGGTTGAAGGGGTGCAAAGGGCGATCCAGGCGCTTGCTGTGAATAATTTGATCGGATTCTTCTTCAGTTTCTTGGTGCCGGAGACAAAGGGCCGGTCACTTAAGGAGGTTTCGGGGGAGGACAATGATTTTGGAGGCAATGGTGTGACAGCCGTTAGTGCATATGAGAAGGCAGTTGAAGCTAGTGCTGCCATTGTTAGCAAAGATAAAGTTCCAGAAGCTGAAATAGTAATGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sugar_tr

Protein Analysis

272

Amino Acids

29.51

Weight (kDa)

5.41

Isoelectric Point (pI)

29.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sugar_tr PF00083 93 - 230 1.9e-09 Sugar (and other) transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 92
Acc65I GGTACC 2 cut(s) 107, 191
AccB1I GGYRCC 3 cut(s) 107, 191, 652
AccB7I CCANNNNNTGG 1 cut(s) 204
AccII CGCG 1 cut(s) 524
AciI CCGC 7 cut(s) 135, 169, 195, 518, 522, 524, 533
AclWI GGATC 2 cut(s) 119, 595
AcoI YGGCCR 1 cut(s) 519
AcsI RAATTY 1 cut(s) 130
AcuI CTGAAG 1 cut(s) 625
AdeI CACNNNGTG 1 cut(s) 511
AfaI GTAC 6 cut(s) 20, 109, 193, 285, 323, 451
AfiI CCNNNNNNNGG 3 cut(s) 82, 204, 273
AflII CTTAAG 1 cut(s) 677
AgeI ACCGGT 1 cut(s) 91
AgsI TTSAA 2 cut(s) 584, 755
AjnI CCWGG 2 cut(s) 203, 603
AluBI AGCT 4 cut(s) 241, 475, 758, 797
AluI AGCT 4 cut(s) 241, 475, 758, 797
Alw26I GTCTC 2 cut(s) 2, 653
AlwI GGATC 2 cut(s) 119, 595
AlwNI CAGNNNCTG 1 cut(s) 797
Ama87I CYCGRG 2 cut(s) 5, 273
AoxI GGCC 3 cut(s) 51, 519, 667
ApeKI GCWGC 3 cut(s) 548, 559, 764
ApoI RAATTY 1 cut(s) 130
ArsI GACNNNNNNTTYG 4 cut(s) 656, 688, 689, 721
AsiGI ACCGGT 1 cut(s) 91
Asp718I GGTACC 2 cut(s) 107, 191
AspLEI GCGC 1 cut(s) 610
AspS9I GGNCC 2 cut(s) 440, 667
AsuC2I CCSGG 1 cut(s) 482
AvaI CYCGRG 2 cut(s) 5, 273
AvaII GGWCC 1 cut(s) 440
BanI GGYRCC 3 cut(s) 107, 191, 652
BauI CACGAG 1 cut(s) 506
BbvI GCAGC 3 cut(s) 535, 546, 751
BccI CCATC 1 cut(s) 467
BceAI ACGGC 3 cut(s) 190, 468, 713
BciT130I CCWGG 2 cut(s) 205, 605
BcnI CCSGG 1 cut(s) 482
BcoDI GTCTC 2 cut(s) 2, 653
BfaI CTAG 6 cut(s) 119, 153, 215, 311, 486, 759
BfmI CTRYAG 1 cut(s) 560
BfoI RGCGCY 1 cut(s) 611
BfrI CTTAAG 1 cut(s) 677
BisI GCNGC 6 cut(s) 170, 519, 522, 549, 560, 765
BlsI GCNGC 6 cut(s) 171, 520, 523, 550, 561, 766
Bme1390I CCNGG 3 cut(s) 205, 482, 605
Bme18I GGWCC 1 cut(s) 440
BmeT110I CYCGRG 2 cut(s) 5, 273
BmgT120I GGNCC 2 cut(s) 440, 667
BmiI GGNNCC 4 cut(s) 109, 193, 442, 654
BmrFI CCNGG 3 cut(s) 205, 482, 605
BmsI GCATC 1 cut(s) 22
BpmI CTGGAG 1 cut(s) 221
BpuMI CCSGG 1 cut(s) 482
BsaBI GATNNNNATC 1 cut(s) 258
BsaJI CCNNGG 2 cut(s) 27, 522
BsaWI WCCGGW 1 cut(s) 91
Bsc4I CCNNNNNNNGG 3 cut(s) 82, 204, 273
Bse118I RCCGGY 2 cut(s) 91, 669
Bse3DI GCAATG 3 cut(s) 219, 267, 721
Bse8I GATNNNNATC 1 cut(s) 258
BseBI CCWGG 2 cut(s) 205, 605
BseDI CCNNGG 2 cut(s) 27, 522
BseGI GGATG 1 cut(s) 37
BseJI GATNNNNATC 1 cut(s) 258
BseLI CCNNNNNNNGG 3 cut(s) 82, 204, 273
BseMI GCAATG 3 cut(s) 219, 267, 721
BseMII CTCAG 1 cut(s) 260
BseRI GAGGAG 1 cut(s) 356
BseX3I CGGCCG 1 cut(s) 519
BseXI GCAGC 3 cut(s) 535, 546, 751
Bsh1236I CGCG 1 cut(s) 524
Bsh1285I CGRYCG 2 cut(s) 96, 522
BshFI GGCC 3 cut(s) 53, 521, 669
BshNI GGYRCC 3 cut(s) 107, 191, 652
BshTI ACCGGT 1 cut(s) 91
BsiEI CGRYCG 2 cut(s) 96, 522
BsiHKCI CYCGRG 2 cut(s) 5, 273
BsiSI CCGG 4 cut(s) 92, 482, 656, 670
BslFI GGGAC 1 cut(s) 98
BslI CCNNNNNNNGG 3 cut(s) 82, 204, 273
BsmAI GTCTC 2 cut(s) 2, 653
BsmFI GGGAC 1 cut(s) 98
BsnI GGCC 3 cut(s) 53, 521, 669
BsoBI CYCGRG 2 cut(s) 5, 273
Bsp143I GATC 3 cut(s) 124, 600, 627
BspACI CCGC 7 cut(s) 135, 169, 195, 518, 522, 524, 533
BspANI GGCC 3 cut(s) 53, 521, 669
BspCNI CTCAG 1 cut(s) 259
BspFNI CGCG 1 cut(s) 524
BspHI TCATGA 2 cut(s) 43, 574
BspLI GGNNCC 4 cut(s) 109, 193, 442, 654
BspMAI CTGCAG 1 cut(s) 564
BspPI GGATC 2 cut(s) 119, 595
BspT107I GGYRCC 3 cut(s) 107, 191, 652
BspTI CTTAAG 1 cut(s) 677
BsrDI GCAATG 3 cut(s) 219, 267, 721
BsrFI RCCGGY 2 cut(s) 91, 669
BssAI RCCGGY 2 cut(s) 91, 669
BssECI CCNNGG 2 cut(s) 27, 522
BssMI GATC 3 cut(s) 124, 600, 627
BssSI CACGAG 1 cut(s) 506
BssT1I CCWWGG 1 cut(s) 27
Bst2BI CACGAG 1 cut(s) 506
Bst2UI CCWGG 2 cut(s) 205, 605
Bst4CI ACNGT 1 cut(s) 449
BstAFI CTTAAG 1 cut(s) 677
BstC8I GCNNGC 3 cut(s) 416, 526, 612
BstDEI CTNAG 3 cut(s) 164, 246, 332
BstDSI CCRYGG 1 cut(s) 522
BstF5I GGATG 1 cut(s) 37
BstFNI CGCG 1 cut(s) 524
BstH2I RGCGCY 1 cut(s) 611
BstHHI GCGC 1 cut(s) 610
BstKTI GATC 3 cut(s) 127, 603, 630
BstMAI GTCTC 2 cut(s) 2, 653
BstMBI GATC 3 cut(s) 124, 600, 627
BstMCI CGRYCG 2 cut(s) 96, 522
BstMWI GCNNNNNNNGC 8 cut(s) 32, 65, 530, 545, 605, 734, 755, 764
BstNI CCWGG 2 cut(s) 205, 605
BstNSI RCATGY 1 cut(s) 504
BstSCI CCNGG 3 cut(s) 203, 480, 603
BstSFI CTRYAG 1 cut(s) 560
BstUI CGCG 1 cut(s) 524
BstV1I GCAGC 3 cut(s) 535, 546, 751
BstZI CGGCCG 1 cut(s) 519
BsuRI GGCC 3 cut(s) 53, 521, 669
BtgI CCRYGG 1 cut(s) 522
BtsCI GGATG 1 cut(s) 37
BtsI GCAGTG 1 cut(s) 21
BtsIMutI CAGTG 1 cut(s) 21
Cac8I GCNNGC 3 cut(s) 416, 526, 612
CaiI CAGNNNCTG 1 cut(s) 797
CciI TCATGA 2 cut(s) 43, 574
CciNI GCGGCCGC 1 cut(s) 519
CfoI GCGC 1 cut(s) 610
Cfr10I RCCGGY 2 cut(s) 91, 669
Cfr13I GGNCC 2 cut(s) 440, 667
Cfr42I CCGCGG 1 cut(s) 525
CsiI ACCWGGT 1 cut(s) 203
Csp6I GTAC 6 cut(s) 19, 108, 192, 284, 322, 450
CspAI ACCGGT 1 cut(s) 91
CviAII CATG 5 cut(s) 44, 64, 301, 501, 575
CviQI GTAC 6 cut(s) 19, 108, 192, 284, 322, 450
DdeI CTNAG 3 cut(s) 164, 246, 332
DpnI GATC 3 cut(s) 126, 602, 629
DpnII GATC 3 cut(s) 124, 600, 627
DraIII CACNNNGTG 1 cut(s) 511
DrdI GACNNNNNNGTC 1 cut(s) 92
DseDI GACNNNNNNGTC 1 cut(s) 92
EaeI YGGCCR 1 cut(s) 519
EagI CGGCCG 1 cut(s) 519
EclXI CGGCCG 1 cut(s) 519
Eco130I CCWWGG 1 cut(s) 27
Eco47I GGWCC 1 cut(s) 440
Eco52I CGGCCG 1 cut(s) 519
Eco57I CTGAAG 1 cut(s) 625
Eco88I CYCGRG 2 cut(s) 5, 273
EcoRII CCWGG 2 cut(s) 203, 603
EcoT14I CCWWGG 1 cut(s) 27
ErhI CCWWGG 1 cut(s) 27
FaeI CATG 5 cut(s) 47, 67, 304, 504, 578
FaqI GGGAC 1 cut(s) 98
FatI CATG 5 cut(s) 43, 63, 300, 500, 574
FauI CCCGC 2 cut(s) 517, 526
FauNDI CATATG 2 cut(s) 139, 739
Fnu4HI GCNGC 6 cut(s) 170, 519, 522, 549, 560, 765
FokI GGATG 1 cut(s) 44
Fsp4HI GCNGC 6 cut(s) 170, 519, 522, 549, 560, 765
FspBI CTAG 6 cut(s) 119, 153, 215, 311, 486, 759
GlaI GCGC 1 cut(s) 609
GluI GCNGC 6 cut(s) 170, 519, 522, 549, 560, 765
GsuI CTGGAG 1 cut(s) 221
HaeII RGCGCY 1 cut(s) 611
HaeIII GGCC 3 cut(s) 53, 521, 669
HapII CCGG 4 cut(s) 92, 482, 656, 670
HhaI GCGC 1 cut(s) 610
Hin1II CATG 5 cut(s) 47, 67, 304, 504, 578
Hin6I GCGC 1 cut(s) 608
HinP1I GCGC 1 cut(s) 608
HinfI GANTC 2 cut(s) 101, 633
HpaII CCGG 4 cut(s) 92, 482, 656, 670
Hpy166II GTNNAC 3 cut(s) 21, 398, 498
Hpy188I TCNGA 3 cut(s) 98, 249, 632
Hpy188III TCNNGA 3 cut(s) 44, 575, 791
Hpy8I GTNNAC 3 cut(s) 21, 398, 498
HpyAV CCTTC 4 cut(s) 244, 273, 578, 739
HpyCH4III ACNGT 1 cut(s) 449
HpyF10VI GCNNNNNNNGC 8 cut(s) 32, 65, 530, 545, 605, 734, 755, 764
HpyF3I CTNAG 3 cut(s) 164, 246, 332
Hsp92II CATG 5 cut(s) 47, 67, 304, 504, 578
HspAI GCGC 1 cut(s) 608
KpnI GGTACC 2 cut(s) 111, 195
KspI CCGCGG 1 cut(s) 525
Kzo9I GATC 3 cut(s) 124, 600, 627
Lsp1109I GCAGC 3 cut(s) 535, 546, 751
LweI GCATC 1 cut(s) 22
MabI ACCWGGT 1 cut(s) 203
MaeI CTAG 6 cut(s) 119, 153, 215, 311, 486, 759
MaeIII GTNAC 3 cut(s) 382, 672, 721
MalI GATC 3 cut(s) 126, 602, 629
MboI GATC 3 cut(s) 124, 600, 627
MboII GAAGA 3 cut(s) 176, 628, 631
MluCI AATT 5 cut(s) 130, 143, 391, 565, 622
MmeI TCCRAC 1 cut(s) 76
MnlI CCTC 9 cut(s) 32, 86, 245, 334, 502, 571, 676, 688, 704
MseI TTAA 1 cut(s) 678
MspA1I CMGCKG 2 cut(s) 518, 524
MspCI CTTAAG 1 cut(s) 677
MspI CCGG 4 cut(s) 92, 482, 656, 670
MspR9I CCNGG 3 cut(s) 205, 482, 605
MvaI CCWGG 2 cut(s) 205, 605
MvnI CGCG 1 cut(s) 524
MwoI GCNNNNNNNGC 8 cut(s) 32, 65, 530, 545, 605, 734, 755, 764
NciI CCSGG 1 cut(s) 482
NdeI CATATG 2 cut(s) 139, 739
NdeII GATC 3 cut(s) 124, 600, 627
NlaIII CATG 5 cut(s) 47, 67, 304, 504, 578
NlaIV GGNNCC 4 cut(s) 109, 193, 442, 654
NmeAIII GCCGAG 1 cut(s) 496
NmuCI GTSAC 3 cut(s) 382, 672, 721
NotI GCGGCCGC 1 cut(s) 519
NspI RCATGY 1 cut(s) 504
PagI TCATGA 2 cut(s) 43, 574
PcsI WCGNNNNNNNCGW 1 cut(s) 468
PfeI GAWTC 2 cut(s) 101, 633
PflMI CCANNNNNTGG 1 cut(s) 204
PinAI ACCGGT 1 cut(s) 91
PkrI GCNGC 6 cut(s) 171, 520, 523, 550, 561, 766
Psp6I CCWGG 2 cut(s) 203, 603
PspGI CCWGG 2 cut(s) 203, 603
PspN4I GGNNCC 4 cut(s) 109, 193, 442, 654
PspPI GGNCC 2 cut(s) 440, 667
PstI CTGCAG 1 cut(s) 564
PstNI CAGNNNCTG 1 cut(s) 797
RsaI GTAC 6 cut(s) 20, 109, 193, 285, 323, 451
RsaNI GTAC 6 cut(s) 19, 108, 192, 284, 322, 450
SacII CCGCGG 1 cut(s) 525
SaqAI TTAA 1 cut(s) 678
SatI GCNGC 6 cut(s) 170, 519, 522, 549, 560, 765
Sau3AI GATC 3 cut(s) 124, 600, 627
Sau96I GGNCC 2 cut(s) 440, 667
ScrFI CCNGG 3 cut(s) 205, 482, 605
SexAI ACCWGGT 1 cut(s) 203
SfaNI GCATC 1 cut(s) 22
SfcI CTRYAG 1 cut(s) 560
Sfr303I CCGCGG 1 cut(s) 525
SgrBI CCGCGG 1 cut(s) 525
SinI GGWCC 1 cut(s) 440
SmlI CTYRAG 1 cut(s) 677
SmoI CTYRAG 1 cut(s) 677
Sse9I AATT 5 cut(s) 130, 143, 391, 565, 622
SsiI CCGC 7 cut(s) 135, 169, 195, 518, 522, 524, 533
SspMI CTAG 6 cut(s) 119, 153, 215, 311, 486, 759
StyD4I CCNGG 3 cut(s) 203, 480, 603
StyI CCWWGG 1 cut(s) 27
TaaI ACNGT 1 cut(s) 449
TaqI TCGA 2 cut(s) 78, 293
TasI AATT 5 cut(s) 130, 143, 391, 565, 622
TatI WGTACW 1 cut(s) 283
TauI GCSGC 3 cut(s) 172, 521, 524
TfiI GAWTC 2 cut(s) 101, 633
Tru1I TTAA 1 cut(s) 678
Tru9I TTAA 1 cut(s) 678
TscAI CASTG 1 cut(s) 28
TseFI GTSAC 3 cut(s) 382, 672, 721
TseI GCWGC 3 cut(s) 548, 559, 764
Tsp45I GTSAC 3 cut(s) 382, 672, 721
TspDTI ATGAA 2 cut(s) 156, 289
TspGWI ACGGA 1 cut(s) 339
TspRI CASTG 1 cut(s) 28
Van91I CCANNNNNTGG 1 cut(s) 204
Vha464I CTTAAG 1 cut(s) 677
VpaK11BI GGWCC 1 cut(s) 440
XapI RAATTY 1 cut(s) 130
XceI RCATGY 1 cut(s) 504
XcmI CCANNNNNNNNNTGG 1 cut(s) 61
XspI CTAG 6 cut(s) 119, 153, 215, 311, 486, 759
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.