Rorug01G0416900

Inorganic phosphate transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0001012
Physical Location & Seq
Reverse (-)
51942122 .. 51943149
1028 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0416900.1

Sequence Viewer

Length: 603 bp
ATGATGGTTCCCTCTAATACTCTTATCTGTATCAGCTTAGACATCATGGCAAAGCTTCTTCTGGTTTGTGGTCTTTTGGTTCTTGGATTTGCACTAACATGCTATGCTGCCACAACCTACACGGTGGGTGGTAACTCTGGCTGGGACATAAGCACTGATCTCCCTACATGGGCCTCAGACAAGAAGTTCGTCGTCGGCGATGTTCTATGGTTCCAGTATTCATCATCAAACAGTGTCAATCAAGTGACCAAAGAAAACTTCGAGGGCTGCAACACGACCAATGTAGTGAAGTCATATACCGGAGGGAACGCAACGGTCACATTGACAAGACCTGGTGAGTGGTATTTTGTGAGTGGTAACAAGCTCTATTGCTTGGGAGGGATGAAGCTTCAAGTACCCGTGCAAGGTAACCAACTATCTTATGCGCCGGCCAGTGCACCGCAGTCGTCAACCGGTTCGGACCAAGGGCCTAACTCTCTTCCGAACCACCCTTCTTCTAAGAACAACACTCCCACTTCAGCTGGGCTCAGCATCCATGGTGGTTCTGATAATGTTCTTGTCTTGATTGTTTTCGGTACTTTAGCTGCCATGCTATGGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0016020 GO:0016021 GO:0031224 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sugar_tr

Protein Analysis

200

Amino Acids

21.19

Weight (kDa)

6.03

Isoelectric Point (pI)

25.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 48 - 128 7.9e-21 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 594
AciI CCGC 1 cut(s) 440
AcoI YGGCCR 1 cut(s) 429
AcuI CTGAAG 1 cut(s) 501
AfaI GTAC 2 cut(s) 396, 577
AfiI CCNNNNNNNGG 3 cut(s) 169, 404, 594
AgeI ACCGGT 1 cut(s) 452
AgsI TTSAA 1 cut(s) 392
AjnI CCWGG 1 cut(s) 331
AjuI GAANNNNNNNTTGG 2 cut(s) 242, 274
AluBI AGCT 6 cut(s) 36, 55, 364, 388, 521, 584
AluI AGCT 6 cut(s) 36, 55, 364, 388, 521, 584
Alw21I GWGCWC 1 cut(s) 439
Alw44I GTGCAC 1 cut(s) 435
AoxI GGCC 3 cut(s) 171, 429, 467
ApaLI GTGCAC 1 cut(s) 435
ApeKI GCWGC 3 cut(s) 107, 267, 584
ArsI GACNNNNNNTTYG 2 cut(s) 170, 202
AsiGI ACCGGT 1 cut(s) 452
AspLEI GCGC 1 cut(s) 427
AspS9I GGNCC 3 cut(s) 171, 460, 467
AsuHPI GGTGA 1 cut(s) 347
AvaII GGWCC 1 cut(s) 460
BaeGI GKGCMC 1 cut(s) 439
BanII GRGCYC 1 cut(s) 528
Bbv12I GWGCWC 1 cut(s) 439
BbvI GCAGC 3 cut(s) 94, 254, 571
BcgI CGANNNNNNTGC 2 cut(s) 426, 460
BciT130I CCWGG 1 cut(s) 333
BisI GCNGC 3 cut(s) 108, 268, 585
BlpI GCTNAGC 1 cut(s) 527
BlsI GCNGC 3 cut(s) 109, 269, 586
Bme1390I CCNGG 1 cut(s) 333
Bme18I GGWCC 1 cut(s) 460
BmgT120I GGNCC 3 cut(s) 171, 460, 467
BmiI GGNNCC 2 cut(s) 9, 212
BmrFI CCNGG 1 cut(s) 333
BmsI GCATC 1 cut(s) 540
Bpu1102I GCTNAGC 1 cut(s) 527
BsaJI CCNNGG 2 cut(s) 463, 535
BsaWI WCCGGW 2 cut(s) 299, 452
Bsc4I CCNNNNNNNGG 3 cut(s) 169, 404, 594
Bse118I RCCGGY 2 cut(s) 427, 452
Bse1I ACTGG 2 cut(s) 214, 432
BseBI CCWGG 1 cut(s) 333
BseDI CCNNGG 2 cut(s) 463, 535
BseGI GGATG 3 cut(s) 387, 531, 603
BseLI CCNNNNNNNGG 3 cut(s) 169, 404, 594
BseMII CTCAG 2 cut(s) 189, 541
BseNI ACTGG 2 cut(s) 214, 432
BseSI GKGCMC 1 cut(s) 439
BseXI GCAGC 3 cut(s) 94, 254, 571
BseYI CCCAGC 2 cut(s) 141, 521
BshFI GGCC 3 cut(s) 173, 431, 469
BshTI ACCGGT 1 cut(s) 452
BsiHKAI GWGCWC 1 cut(s) 439
BsiSI CCGG 3 cut(s) 300, 428, 453
BslFI GGGAC 1 cut(s) 158
BslI CCNNNNNNNGG 3 cut(s) 169, 404, 594
BsmFI GGGAC 1 cut(s) 158
BsnI GGCC 3 cut(s) 173, 431, 469
Bsp1286I GDGCHC 2 cut(s) 439, 528
Bsp143I GATC 1 cut(s) 157
Bsp1720I GCTNAGC 1 cut(s) 527
Bsp19I CCATGG 1 cut(s) 535
BspACI CCGC 1 cut(s) 440
BspANI GGCC 3 cut(s) 173, 431, 469
BspCNI CTCAG 2 cut(s) 188, 540
BspLI GGNNCC 2 cut(s) 9, 212
BsrFI RCCGGY 2 cut(s) 427, 452
BsrI ACTGG 2 cut(s) 214, 432
BssAI RCCGGY 2 cut(s) 427, 452
BssECI CCNNGG 2 cut(s) 463, 535
BssMI GATC 1 cut(s) 157
BssT1I CCWWGG 2 cut(s) 463, 535
Bst2UI CCWGG 1 cut(s) 333
Bst4CI ACNGT 3 cut(s) 124, 233, 316
Bst6I CTCTTC 1 cut(s) 483
BstC8I GCNNGC 1 cut(s) 429
BstDEI CTNAG 4 cut(s) 37, 175, 498, 527
BstDSI CCRYGG 1 cut(s) 535
BstEII GGTNACC 1 cut(s) 407
BstF5I GGATG 3 cut(s) 387, 531, 603
BstHHI GCGC 1 cut(s) 427
BstKTI GATC 1 cut(s) 160
BstMBI GATC 1 cut(s) 157
BstNI CCWGG 1 cut(s) 333
BstNSI RCATGY 1 cut(s) 102
BstPI GGTNACC 1 cut(s) 407
BstSCI CCNGG 1 cut(s) 331
BstSLI GKGCMC 1 cut(s) 439
BstV1I GCAGC 3 cut(s) 94, 254, 571
BsuRI GGCC 3 cut(s) 173, 431, 469
BtgI CCRYGG 1 cut(s) 535
BtgZI GCGATG 1 cut(s) 213
BtsCI GGATG 3 cut(s) 387, 531, 603
BtsIMutI CAGTG 3 cut(s) 153, 238, 439
Cac8I GCNNGC 1 cut(s) 429
CfoI GCGC 1 cut(s) 427
Cfr10I RCCGGY 2 cut(s) 427, 452
Cfr13I GGNCC 3 cut(s) 171, 460, 467
CsiI ACCWGGT 1 cut(s) 331
Csp6I GTAC 2 cut(s) 395, 576
CspAI ACCGGT 1 cut(s) 452
CviAII CATG 5 cut(s) 46, 99, 168, 536, 589
CviQI GTAC 2 cut(s) 395, 576
DdeI CTNAG 4 cut(s) 37, 175, 498, 527
DpnI GATC 1 cut(s) 159
DpnII GATC 1 cut(s) 157
EaeI YGGCCR 1 cut(s) 429
Eam1104I CTCTTC 1 cut(s) 483
EarI CTCTTC 1 cut(s) 483
Eco130I CCWWGG 2 cut(s) 463, 535
Eco24I GRGCYC 1 cut(s) 528
Eco47I GGWCC 1 cut(s) 460
Eco57I CTGAAG 1 cut(s) 501
Eco91I GGTNACC 1 cut(s) 407
EcoO109I RGGNCCY 1 cut(s) 467
EcoO65I GGTNACC 1 cut(s) 407
EcoRII CCWGG 1 cut(s) 331
EcoT14I CCWWGG 2 cut(s) 463, 535
EcoT38I GRGCYC 1 cut(s) 528
ErhI CCWWGG 2 cut(s) 463, 535
FaeI CATG 5 cut(s) 49, 102, 171, 539, 592
FaqI GGGAC 1 cut(s) 158
FatI CATG 5 cut(s) 45, 98, 167, 535, 588
Fnu4HI GCNGC 3 cut(s) 108, 268, 585
FokI GGATG 2 cut(s) 394, 518
FriOI GRGCYC 1 cut(s) 528
Fsp4HI GCNGC 3 cut(s) 108, 268, 585
GlaI GCGC 1 cut(s) 426
GluI GCNGC 3 cut(s) 108, 268, 585
GsaI CCCAGC 2 cut(s) 145, 525
HaeIII GGCC 3 cut(s) 173, 431, 469
HapII CCGG 3 cut(s) 300, 428, 453
HhaI GCGC 1 cut(s) 427
Hin1II CATG 5 cut(s) 49, 102, 171, 539, 592
Hin6I GCGC 1 cut(s) 425
HinP1I GCGC 1 cut(s) 425
HincII GTYRAC 1 cut(s) 450
HindII GTYRAC 1 cut(s) 450
HindIII AAGCTT 2 cut(s) 53, 386
HpaII CCGG 3 cut(s) 300, 428, 453
HphI GGTGA 1 cut(s) 347
Hpy166II GTNNAC 2 cut(s) 437, 450
Hpy188I TCNGA 4 cut(s) 178, 460, 483, 547
Hpy188III TCNNGA 1 cut(s) 562
Hpy8I GTNNAC 2 cut(s) 437, 450
Hpy99I CGWCG 2 cut(s) 194, 197
HpyAV CCTTC 1 cut(s) 501
HpyCH4III ACNGT 3 cut(s) 124, 233, 316
HpyCH4V TGCA 4 cut(s) 92, 270, 403, 437
HpyF3I CTNAG 4 cut(s) 37, 175, 498, 527
Hsp92II CATG 5 cut(s) 49, 102, 171, 539, 592
HspAI GCGC 1 cut(s) 425
KroI GCCGGC 1 cut(s) 427
KroNI GCCGGC 1 cut(s) 429
Kzo9I GATC 1 cut(s) 157
Lsp1109I GCAGC 3 cut(s) 94, 254, 571
LweI GCATC 1 cut(s) 540
MabI ACCWGGT 1 cut(s) 331
MaeIII GTNAC 5 cut(s) 131, 244, 316, 356, 407
MalI GATC 1 cut(s) 159
MboI GATC 1 cut(s) 157
MboII GAAGA 3 cut(s) 50, 470, 486
MhlI GDGCHC 2 cut(s) 439, 528
MnlI CCTC 5 cut(s) 22, 184, 256, 296, 371
MroNI GCCGGC 1 cut(s) 427
MslI CAYNNNNRTG 1 cut(s) 97
MspA1I CMGCKG 1 cut(s) 521
MspI CCGG 3 cut(s) 300, 428, 453
MspR9I CCNGG 1 cut(s) 333
MvaI CCWGG 1 cut(s) 333
NaeI GCCGGC 1 cut(s) 429
NcoI CCATGG 1 cut(s) 535
NdeII GATC 1 cut(s) 157
NgoMIV GCCGGC 1 cut(s) 427
NlaIII CATG 5 cut(s) 49, 102, 171, 539, 592
NlaIV GGNNCC 2 cut(s) 9, 212
NmuCI GTSAC 2 cut(s) 244, 316
NspI RCATGY 1 cut(s) 102
PcsI WCGNNNNNNNCGW 1 cut(s) 195
PdiI GCCGGC 1 cut(s) 429
PflMI CCANNNNNTGG 1 cut(s) 594
PinAI ACCGGT 1 cut(s) 452
PkrI GCNGC 3 cut(s) 109, 269, 586
Psp6I CCWGG 1 cut(s) 331
PspEI GGTNACC 1 cut(s) 407
PspFI CCCAGC 2 cut(s) 141, 521
PspGI CCWGG 1 cut(s) 331
PspN4I GGNNCC 2 cut(s) 9, 212
PspPI GGNCC 3 cut(s) 171, 460, 467
PvuII CAGCTG 1 cut(s) 521
RsaI GTAC 2 cut(s) 396, 577
RsaNI GTAC 2 cut(s) 395, 576
RseI CAYNNNNRTG 1 cut(s) 97
SatI GCNGC 3 cut(s) 108, 268, 585
Sau3AI GATC 1 cut(s) 157
Sau96I GGNCC 3 cut(s) 171, 460, 467
ScrFI CCNGG 1 cut(s) 333
SduI GDGCHC 2 cut(s) 439, 528
SetI ASST 9 cut(s) 38, 57, 119, 334, 366, 390, 409, 523, 586
SexAI ACCWGGT 1 cut(s) 331
SfaNI GCATC 1 cut(s) 540
SinI GGWCC 1 cut(s) 460
SmiMI CAYNNNNRTG 1 cut(s) 97
SsiI CCGC 1 cut(s) 440
StyD4I CCNGG 1 cut(s) 331
StyI CCWWGG 2 cut(s) 463, 535
TaaI ACNGT 3 cut(s) 124, 233, 316
TaqI TCGA 1 cut(s) 261
TscAI CASTG 3 cut(s) 160, 238, 439
TseFI GTSAC 2 cut(s) 244, 316
TseI GCWGC 3 cut(s) 107, 267, 584
Tsp45I GTSAC 2 cut(s) 244, 316
TspDTI ATGAA 2 cut(s) 210, 398
TspRI CASTG 3 cut(s) 160, 238, 439
Van91I CCANNNNNTGG 1 cut(s) 594
VneI GTGCAC 1 cut(s) 435
VpaK11BI GGWCC 1 cut(s) 460
XceI RCATGY 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.