MD01G1170400.v1.1
NAC Family

inactive receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0017737
Physical Location & Seq
Reverse (-)
27375587 .. 27375868
282 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1170400.v1.1.491

Sequence Viewer

Length: 282 bp
ATGTTTGAGTCAATAATCAACATGGTTGATCTTCCGCGTTGGGTTAAATCTGTTGTGCTTGAGGAGTGGACAGCTGAGGTTTTTGATTTGGAACTTCTAAAACAGCAACACAGTGAAGAAGAGATGGTGCAGATGCTGCAGATTGCTCTGGCATGCGTAACAAAATTGCCCGAAACACGCCCCAACATGGATGAAGTAGTCAGAATGATAGAGGAATTCCGGCAATCCGACACGAAAACTAGGCAATCCTCCGAGTCGAAATTTGATGTGCAAACCCCATGA

Protein Analysis

94

Amino Acids

10.97

Weight (kDa)

4.55

Isoelectric Point (pI)

70.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017737)

Species Orthologous Gene IDs
malus_domestica MD01G1170400.v1.1
pyrus_communis pycom06g09550
rosa_chinensis RchiOBHm_Chr7g0191171 RchiOBHm_Chr7g0191181
rosa_laevigata RLG00000004471
rosa_multiflora Rmu_sc0016007.1_g000008 Rmu_sc0019130.1_g000002
rosa_rugosa Rorug06G0509400
rosa_samantha Rh7AG116600 Rh7BG118800 Rh7CG121500 Rh7DG119800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 37
AciI CCGC 1 cut(s) 35
AcsI RAATTY 2 cut(s) 215, 260
AfiI CCNNNNNNNGG 1 cut(s) 187
AluBI AGCT 1 cut(s) 74
AluI AGCT 1 cut(s) 74
AlwNI CAGNNNCTG 1 cut(s) 136
ApeKI GCWGC 1 cut(s) 136
ApoI RAATTY 2 cut(s) 215, 260
BbvCI CCTCAGC 1 cut(s) 75
BbvI GCAGC 1 cut(s) 123
BccI CCATC 1 cut(s) 118
BfaI CTAG 1 cut(s) 240
BfmI CTRYAG 1 cut(s) 137
BisI GCNGC 1 cut(s) 137
BlsI GCNGC 1 cut(s) 138
BmsI GCATC 1 cut(s) 123
Bpu10I CCTNAGC 1 cut(s) 75
BpuEI CTTGAG 1 cut(s) 80
Bsc4I CCNNNNNNNGG 1 cut(s) 187
BseGI GGATG 1 cut(s) 196
BseLI CCNNNNNNNGG 1 cut(s) 187
BseMII CTCAG 1 cut(s) 66
BseRI GAGGAG 1 cut(s) 77
BseXI GCAGC 1 cut(s) 123
BsgI GTGCAG 1 cut(s) 149
Bsh1236I CGCG 1 cut(s) 37
BsiSI CCGG 1 cut(s) 220
BslI CCNNNNNNNGG 1 cut(s) 187
Bsp143I GATC 1 cut(s) 28
BspACI CCGC 1 cut(s) 35
BspCNI CTCAG 1 cut(s) 67
BspFNI CGCG 1 cut(s) 37
BspMAI CTGCAG 1 cut(s) 141
BssMI GATC 1 cut(s) 28
Bst4CI ACNGT 1 cut(s) 113
Bst6I CTCTTC 1 cut(s) 114
BstAPI GCANNNNNTGC 1 cut(s) 136
BstC8I GCNNGC 1 cut(s) 154
BstDEI CTNAG 1 cut(s) 75
BstF5I GGATG 1 cut(s) 196
BstFNI CGCG 1 cut(s) 37
BstKTI GATC 1 cut(s) 31
BstMBI GATC 1 cut(s) 28
BstMWI GCNNNNNNNGC 1 cut(s) 136
BstNSI RCATGY 1 cut(s) 156
BstSFI CTRYAG 1 cut(s) 137
BstUI CGCG 1 cut(s) 37
BstV1I GCAGC 1 cut(s) 123
BtsCI GGATG 1 cut(s) 196
BtsIMutI CAGTG 1 cut(s) 118
Cac8I GCNNGC 1 cut(s) 154
CaiI CAGNNNCTG 1 cut(s) 136
CviAII CATG 4 cut(s) 22, 153, 187, 279
CviJI RGCY 1 cut(s) 74
CviKI_1 RGCY 1 cut(s) 74
DdeI CTNAG 1 cut(s) 75
DpnI GATC 1 cut(s) 30
DpnII GATC 1 cut(s) 28
Eam1104I CTCTTC 1 cut(s) 114
EarI CTCTTC 1 cut(s) 114
EcoRI GAATTC 1 cut(s) 215
FaeI CATG 4 cut(s) 25, 156, 190, 282
FaiI YATR 4 cut(s) 23, 154, 188, 280
FatI CATG 4 cut(s) 21, 152, 186, 278
Fnu4HI GCNGC 1 cut(s) 137
FokI GGATG 1 cut(s) 203
Fsp4HI GCNGC 1 cut(s) 137
FspBI CTAG 1 cut(s) 240
GluI GCNGC 1 cut(s) 137
HapII CCGG 1 cut(s) 220
Hin1II CATG 4 cut(s) 25, 156, 190, 282
HinfI GANTC 2 cut(s) 8, 254
HpaII CCGG 1 cut(s) 220
Hpy166II GTNNAC 1 cut(s) 69
Hpy188I TCNGA 3 cut(s) 203, 229, 253
Hpy8I GTNNAC 1 cut(s) 69
HpyCH4III ACNGT 1 cut(s) 113
HpyCH4V TGCA 3 cut(s) 130, 139, 271
HpyF10VI GCNNNNNNNGC 1 cut(s) 136
HpyF3I CTNAG 1 cut(s) 75
Hsp92II CATG 4 cut(s) 25, 156, 190, 282
Kzo9I GATC 1 cut(s) 28
LpnPI CCDG 2 cut(s) 134, 233
Lsp1109I GCAGC 1 cut(s) 123
LweI GCATC 1 cut(s) 123
MaeI CTAG 1 cut(s) 240
MaeIII GTNAC 1 cut(s) 157
MalI GATC 1 cut(s) 30
MboI GATC 1 cut(s) 28
MboII GAAGA 3 cut(s) 23, 128, 131
MluCI AATT 3 cut(s) 164, 215, 260
MlyI GAGTC 2 cut(s) 17, 263
MmeI TCCRAC 1 cut(s) 252
MnlI CCTC 4 cut(s) 55, 70, 205, 259
MseI TTAA 1 cut(s) 45
MspA1I CMGCKG 1 cut(s) 74
MspI CCGG 1 cut(s) 220
MvnI CGCG 1 cut(s) 37
MwoI GCNNNNNNNGC 1 cut(s) 136
NdeII GATC 1 cut(s) 28
NlaIII CATG 4 cut(s) 25, 156, 190, 282
NspI RCATGY 1 cut(s) 156
PaeI GCATGC 1 cut(s) 156
PkrI GCNGC 1 cut(s) 138
PleI GAGTC 2 cut(s) 16, 262
PpsI GAGTC 2 cut(s) 16, 262
PstI CTGCAG 1 cut(s) 141
PstNI CAGNNNCTG 1 cut(s) 136
PvuII CAGCTG 1 cut(s) 74
SaqAI TTAA 1 cut(s) 45
SatI GCNGC 1 cut(s) 137
Sau3AI GATC 1 cut(s) 28
SchI GAGTC 2 cut(s) 17, 263
SetI ASST 2 cut(s) 76, 81
SfaNI GCATC 1 cut(s) 123
SfcI CTRYAG 1 cut(s) 137
SmlI CTYRAG 1 cut(s) 59
SmoI CTYRAG 1 cut(s) 59
SphI GCATGC 1 cut(s) 156
Sse9I AATT 3 cut(s) 164, 215, 260
SsiI CCGC 1 cut(s) 35
SspMI CTAG 1 cut(s) 240
TaaI ACNGT 1 cut(s) 113
TaqI TCGA 1 cut(s) 257
TasI AATT 3 cut(s) 164, 215, 260
Tru1I TTAA 1 cut(s) 45
Tru9I TTAA 1 cut(s) 45
TscAI CASTG 1 cut(s) 118
TseI GCWGC 1 cut(s) 136
TspDTI ATGAA 1 cut(s) 207
TspRI CASTG 1 cut(s) 118
XapI RAATTY 2 cut(s) 215, 260
XceI RCATGY 1 cut(s) 156
XspI CTAG 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.