Rorug06G0509400
NAC Family

inactive receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0017737
Physical Location & Seq
Reverse (-)
62392342 .. 62395076
2735 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0509400.1

Sequence Viewer

Length: 738 bp
ATGGACATTGATTGCAACAGAAACTACACAATGTGGTTTCACTTTGCTGAACTCGATCTAGCAATGTCTGTAGATCAGAGGGTATTTGATATCCTCATAAATGGAATACCAAGGGTCCGGAATGTTGATATTTTGAAAATTAGTGGGGACTATTATGATAGAATTAATGCTTTCATGCTCCATCCGCAAATGTTCGCTAAAGTGCGTTCGCGAGATAAAGTCACCGGGAAGAAAAGTTCGCGAACCCTTGTACTGAAAGCAGTTGTTAGTGTAATTTGGAGCAATTTGACTATAACCTTGCGACCTACAAAAGGCAATCCTCCATTAATTTGTGCAATCGAGATCTTTGAAATTATAACAGCTGAGTTCAAAACAGTACCAGATGAAGTTAACGCTTTGAAGATACTGAAGCATGGATTAGAGCTTAGCAGATGGTTTGGTTGGAATGGGGACCCTTGTGTTCCCCAACAACACCAGTGGATGGGAATAAACTGTCATTATGATAGAAACAAGAGCAAATGGGTTGTTGACGAGCTGGCACTCAATAACCAAGGTCTGAAGGGATTTTTGTACAATGACATTTTAAAATTGCGTCATTTAAAGAGCATAAATCTCAGTGGAACTAATATCCATGGAGCCATTCCATCATCGCTTGGAGAAATTCCAAGTTCTAGGATCTTTCATACAATTCCTTCAACGGATCAATCCCTGAAACGCTTGGACAATTGTCCTCGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005886 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_4 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

245

Amino Acids

28.06

Weight (kDa)

9.21

Isoelectric Point (pI)

37.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017737)

Species Orthologous Gene IDs
malus_domestica MD01G1170400.v1.1
pyrus_communis pycom06g09550
rosa_chinensis RchiOBHm_Chr7g0191171 RchiOBHm_Chr7g0191181
rosa_laevigata RLG00000004471
rosa_multiflora Rmu_sc0016007.1_g000008 Rmu_sc0019130.1_g000002
rosa_rugosa Rorug06G0509400
rosa_samantha Rh7AG116600 Rh7BG118800 Rh7CG121500 Rh7DG119800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 356
AccB7I CCANNNNNTGG 1 cut(s) 481
AccII CGCG 2 cut(s) 211, 241
AccIII TCCGGA 1 cut(s) 117
AciI CCGC 1 cut(s) 185
AclWI GGATC 2 cut(s) 683, 708
AcsI RAATTY 1 cut(s) 660
AcuI CTGAAG 2 cut(s) 428, 578
AdeI CACNNNGTG 1 cut(s) 33
AfaI GTAC 3 cut(s) 252, 378, 572
AfiI CCNNNNNNNGG 2 cut(s) 311, 481
AgsI TTSAA 5 cut(s) 136, 350, 370, 400, 696
AloI GAACNNNNNNTCC 2 cut(s) 220, 252
AluBI AGCT 3 cut(s) 362, 424, 535
AluI AGCT 3 cut(s) 362, 424, 535
AlwI GGATC 2 cut(s) 683, 708
Aor13HI TCCGGA 1 cut(s) 117
ApoI RAATTY 1 cut(s) 660
AseI ATTAAT 2 cut(s) 165, 326
AspS9I GGNCC 2 cut(s) 115, 451
AsuC2I CCSGG 1 cut(s) 226
AsuHPI GGTGA 1 cut(s) 214
AvaII GGWCC 2 cut(s) 115, 451
BccI CCATC 4 cut(s) 189, 426, 475, 652
BcnI CCSGG 1 cut(s) 226
BfaI CTAG 2 cut(s) 59, 672
BfmI CTRYAG 1 cut(s) 69
BglII AGATCT 1 cut(s) 342
BlpI GCTNAGC 1 cut(s) 425
Bme1390I CCNGG 1 cut(s) 226
Bme18I GGWCC 2 cut(s) 115, 451
BmgT120I GGNCC 2 cut(s) 115, 451
BmiI GGNNCC 4 cut(s) 116, 452, 453, 637
BmrFI CCNGG 1 cut(s) 226
BoxI GACNNNNGTC 1 cut(s) 726
Bpu1102I GCTNAGC 1 cut(s) 425
BpuMI CCSGG 1 cut(s) 226
BsaJI CCNNGG 3 cut(s) 110, 550, 631
BsaWI WCCGGW 1 cut(s) 117
Bsc4I CCNNNNNNNGG 2 cut(s) 311, 481
Bse1I ACTGG 1 cut(s) 475
Bse3DI GCAATG 1 cut(s) 69
BseAI TCCGGA 1 cut(s) 117
BseDI CCNNGG 3 cut(s) 110, 550, 631
BseGI GGATG 2 cut(s) 181, 486
BseLI CCNNNNNNNGG 2 cut(s) 311, 481
BseMI GCAATG 1 cut(s) 69
BseMII CTCAG 2 cut(s) 354, 628
BseNI ACTGG 1 cut(s) 475
Bsh1236I CGCG 2 cut(s) 211, 241
BsiSI CCGG 2 cut(s) 118, 225
BslFI GGGAC 2 cut(s) 161, 464
BslI CCNNNNNNNGG 2 cut(s) 311, 481
BsmFI GGGAC 2 cut(s) 161, 464
Bsp13I TCCGGA 1 cut(s) 117
Bsp1407I TGTACA 1 cut(s) 570
Bsp143I GATC 5 cut(s) 55, 73, 342, 675, 700
Bsp1720I GCTNAGC 1 cut(s) 425
Bsp19I CCATGG 1 cut(s) 631
Bsp68I TCGCGA 2 cut(s) 211, 241
BspACI CCGC 1 cut(s) 185
BspCNI CTCAG 2 cut(s) 355, 627
BspEI TCCGGA 1 cut(s) 117
BspFNI CGCG 2 cut(s) 211, 241
BspLI GGNNCC 4 cut(s) 116, 452, 453, 637
BspPI GGATC 2 cut(s) 683, 708
BsrDI GCAATG 1 cut(s) 69
BsrGI TGTACA 1 cut(s) 570
BsrI ACTGG 1 cut(s) 475
BssECI CCNNGG 3 cut(s) 110, 550, 631
BssMI GATC 5 cut(s) 55, 73, 342, 675, 700
BssT1I CCWWGG 3 cut(s) 110, 550, 631
Bst4CI ACNGT 2 cut(s) 376, 494
BstAUI TGTACA 1 cut(s) 570
BstC8I GCNNGC 1 cut(s) 537
BstDEI CTNAG 3 cut(s) 363, 425, 614
BstDSI CCRYGG 1 cut(s) 631
BstENI CCTNNNNNAGG 1 cut(s) 309
BstF5I GGATG 2 cut(s) 181, 486
BstFNI CGCG 2 cut(s) 211, 241
BstKTI GATC 5 cut(s) 58, 76, 345, 678, 703
BstMBI GATC 5 cut(s) 55, 73, 342, 675, 700
BstMWI GCNNNNNNNGC 1 cut(s) 184
BstPAI GACNNNNGTC 1 cut(s) 726
BstSCI CCNGG 1 cut(s) 224
BstSFI CTRYAG 1 cut(s) 69
BstUI CGCG 2 cut(s) 211, 241
BstX2I RGATCY 2 cut(s) 342, 675
BstYI RGATCY 2 cut(s) 342, 675
BtgI CCRYGG 1 cut(s) 631
BtgZI GCGATG 1 cut(s) 633
BtsCI GGATG 2 cut(s) 181, 486
BtsIMutI CAGTG 2 cut(s) 482, 622
BtuMI TCGCGA 2 cut(s) 211, 241
Cac8I GCNNGC 1 cut(s) 537
Cfr13I GGNCC 2 cut(s) 115, 451
CseI GACGC 1 cut(s) 581
Csp6I GTAC 3 cut(s) 251, 377, 571
CspCI CAANNNNNGTGG 2 cut(s) 458, 493
CviAII CATG 3 cut(s) 175, 413, 632
CviJI RGCY 4 cut(s) 362, 424, 535, 638
CviKI_1 RGCY 4 cut(s) 362, 424, 535, 638
CviQI GTAC 3 cut(s) 251, 377, 571
DdeI CTNAG 3 cut(s) 363, 425, 614
DpnI GATC 5 cut(s) 57, 75, 344, 677, 702
DpnII GATC 5 cut(s) 55, 73, 342, 675, 700
DraI TTTAAA 2 cut(s) 585, 600
DraIII CACNNNGTG 1 cut(s) 33
Eco130I CCWWGG 3 cut(s) 110, 550, 631
Eco32I GATATC 1 cut(s) 91
Eco47I GGWCC 2 cut(s) 115, 451
Eco57I CTGAAG 2 cut(s) 428, 578
EcoNI CCTNNNNNAGG 1 cut(s) 309
EcoO109I RGGNCCY 1 cut(s) 451
EcoRV GATATC 1 cut(s) 91
EcoT14I CCWWGG 3 cut(s) 110, 550, 631
ErhI CCWWGG 3 cut(s) 110, 550, 631
FaeI CATG 3 cut(s) 178, 416, 635
FaqI GGGAC 2 cut(s) 161, 464
FatI CATG 3 cut(s) 174, 412, 631
FokI GGATG 2 cut(s) 168, 493
FspBI CTAG 2 cut(s) 59, 672
HapII CCGG 2 cut(s) 118, 225
HgaI GACGC 1 cut(s) 581
Hin1II CATG 3 cut(s) 178, 416, 635
HincII GTYRAC 2 cut(s) 391, 529
HindII GTYRAC 2 cut(s) 391, 529
HpaI GTTAAC 1 cut(s) 391
HpaII CCGG 2 cut(s) 118, 225
HphI GGTGA 1 cut(s) 214
Hpy166II GTNNAC 2 cut(s) 391, 529
Hpy188I TCNGA 2 cut(s) 78, 558
Hpy188III TCNNGA 4 cut(s) 118, 210, 240, 340
Hpy8I GTNNAC 2 cut(s) 391, 529
HpyAV CCTTC 2 cut(s) 553, 702
HpyCH4III ACNGT 2 cut(s) 376, 494
HpyCH4V TGCA 2 cut(s) 15, 335
HpyF10VI GCNNNNNNNGC 1 cut(s) 184
HpyF3I CTNAG 3 cut(s) 363, 425, 614
Hsp92II CATG 3 cut(s) 178, 416, 635
KflI GGGWCCC 1 cut(s) 451
Kpn2I TCCGGA 1 cut(s) 117
KspAI GTTAAC 1 cut(s) 391
Kzo9I GATC 5 cut(s) 55, 73, 342, 675, 700
LmnI GCTCC 3 cut(s) 183, 279, 635
LpnPI CCDG 6 cut(s) 131, 238, 393, 488, 521, 722
MaeI CTAG 2 cut(s) 59, 672
MaeIII GTNAC 1 cut(s) 220
MalI GATC 5 cut(s) 57, 75, 344, 677, 702
MboI GATC 5 cut(s) 55, 73, 342, 675, 700
MboII GAAGA 2 cut(s) 241, 412
MfeI CAATTG 1 cut(s) 724
MflI RGATCY 2 cut(s) 342, 675
MmeI TCCRAC 1 cut(s) 422
MnlI CCTC 3 cut(s) 72, 104, 330
MroI TCCGGA 1 cut(s) 117
MseI TTAA 5 cut(s) 165, 326, 390, 584, 599
MspA1I CMGCKG 1 cut(s) 362
MspI CCGG 2 cut(s) 118, 225
MspR9I CCNGG 1 cut(s) 226
MunI CAATTG 1 cut(s) 724
MvnI CGCG 2 cut(s) 211, 241
MwoI GCNNNNNNNGC 1 cut(s) 184
NciI CCSGG 1 cut(s) 226
NcoI CCATGG 1 cut(s) 631
NdeII GATC 5 cut(s) 55, 73, 342, 675, 700
NlaIII CATG 3 cut(s) 178, 416, 635
NlaIV GGNNCC 4 cut(s) 116, 452, 453, 637
NmuCI GTSAC 1 cut(s) 220
NruI TCGCGA 2 cut(s) 211, 241
PflMI CCANNNNNTGG 1 cut(s) 481
PpuMI RGGWCCY 1 cut(s) 451
PshAI GACNNNNGTC 1 cut(s) 726
PshBI ATTAAT 2 cut(s) 165, 326
PsiI TTATAA 1 cut(s) 356
Psp5II RGGWCCY 1 cut(s) 451
PspN4I GGNNCC 4 cut(s) 116, 452, 453, 637
PspPI GGNCC 2 cut(s) 115, 451
PspPPI RGGWCCY 1 cut(s) 451
PsuI RGATCY 2 cut(s) 342, 675
PvuII CAGCTG 1 cut(s) 362
RruI TCGCGA 2 cut(s) 211, 241
RsaI GTAC 3 cut(s) 252, 378, 572
RsaNI GTAC 3 cut(s) 251, 377, 571
SaqAI TTAA 5 cut(s) 165, 326, 390, 584, 599
Sau3AI GATC 5 cut(s) 55, 73, 342, 675, 700
Sau96I GGNCC 2 cut(s) 115, 451
ScrFI CCNGG 1 cut(s) 226
SetI ASST 6 cut(s) 299, 307, 364, 426, 537, 556
SfcI CTRYAG 1 cut(s) 69
SinI GGWCC 2 cut(s) 115, 451
SsiI CCGC 1 cut(s) 185
SspMI CTAG 2 cut(s) 59, 672
StyD4I CCNGG 1 cut(s) 224
StyI CCWWGG 3 cut(s) 110, 550, 631
TaaI ACNGT 2 cut(s) 376, 494
TaqI TCGA 2 cut(s) 54, 339
TatI WGTACW 2 cut(s) 250, 570
Tru1I TTAA 5 cut(s) 165, 326, 390, 584, 599
Tru9I TTAA 5 cut(s) 165, 326, 390, 584, 599
TscAI CASTG 2 cut(s) 482, 622
TseFI GTSAC 1 cut(s) 220
Tsp45I GTSAC 1 cut(s) 220
TspDTI ATGAA 3 cut(s) 163, 399, 671
TspGWI ACGGA 1 cut(s) 713
TspRI CASTG 2 cut(s) 482, 622
Van91I CCANNNNNTGG 1 cut(s) 481
VpaK11BI GGWCC 2 cut(s) 115, 451
VspI ATTAAT 2 cut(s) 165, 326
XagI CCTNNNNNAGG 1 cut(s) 309
XapI RAATTY 1 cut(s) 660
XspI CTAG 2 cut(s) 59, 672
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.