Rmu_sc0019130.1_g000002
NAC Family

inactive receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0019130.1
OG0017737
Physical Location & Seq
Reverse (-)
7344 .. 11431
4088 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0019130.1_g000002.1.cds

Sequence Viewer

Length: 1095 bp
atgaagacatacaacatgaatgcatgcaaaatggatcagcgtagtagaagaggagaggatagaattcctttagattgggataccctactaagaatagctattggagcagctagaggaatcgctcatatacatgcagagaatggagggaagcttgtcgatggaaacgtcaaagcctcaaatatctttctcaatccacaacagtatggctgtgtttctgatattggtctgacaacaataatgagctcactggctccacctatctcccgtgctgctggttaccgagctccagaagtgacagaaacccgaaaagtagcacagcctgttgatgtgtgggttcattcagttgttcgtgaggagtggacagcagaagtatttgacttagaactgatgaggtatccaggcatagaggaagaaatggtggagatgttacagatagctatgtcttgcgtggtaagaatgccagatcagcgacctaagatgctggatgtagtgcatgaagatgatagaaaacgtgcggcggatggaaatgagaatcgtccatcttctggaaacagatcagaaagcacaacacccctcggatcaacaccgccaccagtagttggaacaccccaatcaacctcaaaagagttagccatttggcatatttctcatctgattgcgcatggcatccaatgttctgtgcagcaactgctgcaagaagcttggccgatggtggaatcttccttagaaaagtattgcatttcatgcacacttgatcaggctgagcgttccattacattctcaaccagctcaaggactaggggtccagatattgttaacaaggctagggatcttcttgagcttttaacattgactgcggttccatcatgccagatcccgtgtcagccatacaaatactggatggtgcaatggctgaacactctgatgtggaataatccattgatgcagcaacacatcaaggcgattgaggaacttggattttttctcattctacccgacacgaggaatggtgcaatggctgaagtttctttgaaatactccactgtgagaacctttgtacattcacaagttcaaccagcagggagagttgtttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005886 GO:0016020 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_4 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

364

Amino Acids

40.81

Weight (kDa)

6.16

Isoelectric Point (pI)

51.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017737)

Species Orthologous Gene IDs
malus_domestica MD01G1170400.v1.1
pyrus_communis pycom06g09550
rosa_chinensis RchiOBHm_Chr7g0191171 RchiOBHm_Chr7g0191181
rosa_laevigata RLG00000004471
rosa_multiflora Rmu_sc0016007.1_g000008 Rmu_sc0019130.1_g000002
rosa_rugosa Rorug06G0509400
rosa_samantha Rh7AG116600 Rh7BG118800 Rh7CG121500 Rh7DG119800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 660
AccB7I CCANNNNNTGG 2 cut(s) 545, 599
AciI CCGC 4 cut(s) 515, 518, 587, 857
AclWI GGATC 4 cut(s) 42, 586, 837, 868
AcoI YGGCCR 1 cut(s) 704
AcsI RAATTY 1 cut(s) 63
AcuI CTGAAG 1 cut(s) 1041
AfaI GTAC 1 cut(s) 1059
AfiI CCNNNNNNNGG 4 cut(s) 545, 599, 792, 1002
AgsI TTSAA 2 cut(s) 1033, 1073
AhdI GACNNNNNGTC 1 cut(s) 801
AjnI CCWGG 1 cut(s) 397
AluBI AGCT 9 cut(s) 98, 110, 151, 243, 284, 437, 701, 789, 841
AluI AGCT 9 cut(s) 98, 110, 151, 243, 284, 437, 701, 789, 841
Alw21I GWGCWC 2 cut(s) 245, 286
AlwI GGATC 4 cut(s) 42, 586, 837, 868
AlwNI CAGNNNCTG 1 cut(s) 688
AoxI GGCC 1 cut(s) 704
ApeKI GCWGC 5 cut(s) 107, 269, 682, 691, 946
ApoI RAATTY 1 cut(s) 63
AspLEI GCGC 1 cut(s) 661
AspS9I GGNCC 1 cut(s) 803
AvaII GGWCC 1 cut(s) 803
BanII GRGCYC 2 cut(s) 245, 286
BauI CACGAG 1 cut(s) 1000
BbsI GAAGAC 1 cut(s) 11
Bbv12I GWGCWC 2 cut(s) 245, 286
BbvI GCAGC 5 cut(s) 119, 256, 678, 694, 958
BccI CCATC 6 cut(s) 152, 515, 547, 703, 871, 895
BciT130I CCWGG 1 cut(s) 399
BciVI GTATCC 2 cut(s) 73, 405
BclI TGATCA 1 cut(s) 754
BfaI CTAG 3 cut(s) 111, 798, 825
BfuI GTATCC 2 cut(s) 73, 405
BisI GCNGC 6 cut(s) 108, 270, 516, 683, 692, 947
BlpI GCTNAGC 1 cut(s) 762
BlsI GCNGC 6 cut(s) 109, 271, 517, 684, 693, 948
Bme1390I CCNGG 1 cut(s) 399
Bme18I GGWCC 1 cut(s) 803
BmeRI GACNNNNNGTC 1 cut(s) 801
BmgT120I GGNCC 1 cut(s) 803
BmiI GGNNCC 3 cut(s) 252, 804, 861
BmrFI CCNGG 1 cut(s) 399
BmsI GCATC 3 cut(s) 468, 675, 933
BpiI GAAGAC 1 cut(s) 11
BpmI CTGGAG 1 cut(s) 270
Bpu1102I GCTNAGC 1 cut(s) 762
BpuEI CTTGAG 2 cut(s) 775, 857
BsaJI CCNNGG 1 cut(s) 574
Bsc4I CCNNNNNNNGG 4 cut(s) 545, 599, 792, 1002
Bse1I ACTGG 3 cut(s) 252, 593, 902
Bse3DI GCAATG 2 cut(s) 914, 1020
BseBI CCWGG 1 cut(s) 399
BseDI CCNNGG 1 cut(s) 574
BseGI GGATG 4 cut(s) 490, 526, 666, 906
BseLI CCNNNNNNNGG 4 cut(s) 545, 599, 792, 1002
BseMI GCAATG 2 cut(s) 914, 1020
BseMII CTCAG 1 cut(s) 753
BseNI ACTGG 3 cut(s) 252, 593, 902
BseRI GAGGAG 2 cut(s) 66, 368
BseXI GCAGC 5 cut(s) 119, 256, 678, 694, 958
BsgI GTGCAG 1 cut(s) 701
BshFI GGCC 1 cut(s) 706
BsiHKAI GWGCWC 2 cut(s) 245, 286
BslI CCNNNNNNNGG 4 cut(s) 545, 599, 792, 1002
BsmI GAATGC 2 cut(s) 25, 462
BsnI GGCC 1 cut(s) 706
Bsp1286I GDGCHC 2 cut(s) 245, 286
Bsp1407I TGTACA 1 cut(s) 1057
Bsp143I GATC 7 cut(s) 34, 463, 554, 578, 754, 829, 873
Bsp1720I GCTNAGC 1 cut(s) 762
BspACI CCGC 4 cut(s) 515, 518, 587, 857
BspANI GGCC 1 cut(s) 706
BspCNI CTCAG 1 cut(s) 754
BspLI GGNNCC 3 cut(s) 252, 804, 861
BspPI GGATC 4 cut(s) 42, 586, 837, 868
BsrDI GCAATG 2 cut(s) 914, 1020
BsrGI TGTACA 1 cut(s) 1057
BsrI ACTGG 3 cut(s) 252, 593, 902
BssECI CCNNGG 1 cut(s) 574
BssMI GATC 7 cut(s) 34, 463, 554, 578, 754, 829, 873
BssSI CACGAG 1 cut(s) 1000
Bst2BI CACGAG 1 cut(s) 1000
Bst2UI CCWGG 1 cut(s) 399
Bst4CI ACNGT 2 cut(s) 201, 1045
Bst6I CTCTTC 1 cut(s) 43
BstAPI GCANNNNNTGC 3 cut(s) 688, 691, 744
BstAUI TGTACA 1 cut(s) 1057
BstC8I GCNNGC 1 cut(s) 25
BstDEI CTNAG 5 cut(s) 89, 379, 474, 724, 762
BstEII GGTNACC 1 cut(s) 275
BstF5I GGATG 4 cut(s) 490, 526, 666, 906
BstHHI GCGC 1 cut(s) 661
BstKTI GATC 7 cut(s) 37, 466, 557, 581, 757, 832, 876
BstMBI GATC 7 cut(s) 34, 463, 554, 578, 754, 829, 873
BstMWI GCNNNNNNNGC 5 cut(s) 104, 466, 688, 691, 744
BstNI CCWGG 1 cut(s) 399
BstNSI RCATGY 2 cut(s) 27, 134
BstPI GGTNACC 1 cut(s) 275
BstSCI CCNGG 1 cut(s) 397
BstV1I GCAGC 5 cut(s) 119, 256, 678, 694, 958
BstV2I GAAGAC 1 cut(s) 11
BstX2I RGATCY 2 cut(s) 829, 873
BstYI RGATCY 2 cut(s) 829, 873
BsuI GTATCC 2 cut(s) 73, 405
BsuRI GGCC 1 cut(s) 706
BtsCI GGATG 4 cut(s) 490, 526, 666, 906
BtsIMutI CAGTG 2 cut(s) 245, 1041
Cac8I GCNNGC 1 cut(s) 25
CaiI CAGNNNCTG 1 cut(s) 688
CfoI GCGC 1 cut(s) 661
Cfr13I GGNCC 1 cut(s) 803
Csp6I GTAC 1 cut(s) 1058
CviAII CATG 7 cut(s) 16, 24, 131, 494, 662, 744, 867
CviQI GTAC 1 cut(s) 1058
DdeI CTNAG 5 cut(s) 89, 379, 474, 724, 762
DpnI GATC 7 cut(s) 36, 465, 556, 580, 756, 831, 875
DpnII GATC 7 cut(s) 34, 463, 554, 578, 754, 829, 873
DriI GACNNNNNGTC 1 cut(s) 801
EaeI YGGCCR 1 cut(s) 704
Eam1104I CTCTTC 1 cut(s) 43
Eam1105I GACNNNNNGTC 1 cut(s) 801
EarI CTCTTC 1 cut(s) 43
EciI GGCGGA 1 cut(s) 533
Ecl136II GAGCTC 2 cut(s) 243, 284
Eco24I GRGCYC 2 cut(s) 245, 286
Eco47I GGWCC 1 cut(s) 803
Eco53kI GAGCTC 2 cut(s) 243, 284
Eco57I CTGAAG 1 cut(s) 1041
Eco91I GGTNACC 1 cut(s) 275
EcoICRI GAGCTC 2 cut(s) 243, 284
EcoO65I GGTNACC 1 cut(s) 275
EcoRI GAATTC 1 cut(s) 63
EcoRII CCWGG 1 cut(s) 397
EcoT22I ATGCAT 1 cut(s) 25
EcoT38I GRGCYC 2 cut(s) 245, 286
FaeI CATG 7 cut(s) 19, 27, 134, 497, 665, 747, 870
FatI CATG 7 cut(s) 15, 23, 130, 493, 661, 743, 866
FbaI TGATCA 1 cut(s) 754
Fnu4HI GCNGC 6 cut(s) 108, 270, 516, 683, 692, 947
FokI GGATG 4 cut(s) 497, 533, 653, 913
FriOI GRGCYC 2 cut(s) 245, 286
Fsp4HI GCNGC 6 cut(s) 108, 270, 516, 683, 692, 947
FspBI CTAG 3 cut(s) 111, 798, 825
FspI TGCGCA 1 cut(s) 660
GlaI GCGC 1 cut(s) 660
GluI GCNGC 6 cut(s) 108, 270, 516, 683, 692, 947
GsuI CTGGAG 1 cut(s) 270
HaeIII GGCC 1 cut(s) 706
HhaI GCGC 1 cut(s) 661
Hin1II CATG 7 cut(s) 19, 27, 134, 497, 665, 747, 870
Hin6I GCGC 1 cut(s) 659
HinP1I GCGC 1 cut(s) 659
HincII GTYRAC 1 cut(s) 817
HindII GTYRAC 1 cut(s) 817
HindIII AAGCTT 2 cut(s) 149, 699
HinfI GANTC 3 cut(s) 117, 532, 716
HpaI GTTAAC 1 cut(s) 817
Hpy166II GTNNAC 2 cut(s) 360, 817
Hpy188I TCNGA 6 cut(s) 217, 228, 559, 578, 654, 924
Hpy188III TCNNGA 5 cut(s) 287, 350, 546, 806, 836
Hpy8I GTNNAC 2 cut(s) 360, 817
HpyCH4III ACNGT 2 cut(s) 201, 1045
HpyCH4IV ACGT 2 cut(s) 165, 511
HpyF10VI GCNNNNNNNGC 5 cut(s) 104, 466, 688, 691, 744
HpyF3I CTNAG 5 cut(s) 89, 379, 474, 724, 762
HpySE526I ACGT 2 cut(s) 165, 511
Hsp92II CATG 7 cut(s) 19, 27, 134, 497, 665, 747, 870
HspAI GCGC 1 cut(s) 659
Ksp22I TGATCA 1 cut(s) 754
KspAI GTTAAC 1 cut(s) 817
Kzo9I GATC 7 cut(s) 34, 463, 554, 578, 754, 829, 873
LmnI GCTCC 3 cut(s) 104, 256, 289
Lsp1109I GCAGC 5 cut(s) 119, 256, 678, 694, 958
LweI GCATC 3 cut(s) 468, 675, 933
MaeI CTAG 3 cut(s) 111, 798, 825
MaeII ACGT 2 cut(s) 165, 511
MaeIII GTNAC 3 cut(s) 275, 292, 426
MalI GATC 7 cut(s) 36, 465, 556, 580, 756, 831, 875
MboI GATC 7 cut(s) 34, 463, 554, 578, 754, 829, 873
MboII GAAGA 7 cut(s) 16, 60, 422, 509, 534, 711, 824
MflI RGATCY 2 cut(s) 829, 873
MhlI GDGCHC 2 cut(s) 245, 286
MluCI AATT 1 cut(s) 63
MmeI TCCRAC 1 cut(s) 580
Mph1103I ATGCAT 1 cut(s) 25
MseI TTAA 2 cut(s) 816, 845
MslI CAYNNNNRTG 3 cut(s) 129, 498, 923
MspR9I CCNGG 1 cut(s) 399
Mva1269I GAATGC 2 cut(s) 25, 462
MvaI CCWGG 1 cut(s) 399
MwoI GCNNNNNNNGC 5 cut(s) 104, 466, 688, 691, 744
NdeII GATC 7 cut(s) 34, 463, 554, 578, 754, 829, 873
NlaIII CATG 7 cut(s) 19, 27, 134, 497, 665, 747, 870
NlaIV GGNNCC 3 cut(s) 252, 804, 861
NmuCI GTSAC 1 cut(s) 292
NsbI TGCGCA 1 cut(s) 660
NsiI ATGCAT 1 cut(s) 25
NspI RCATGY 2 cut(s) 27, 134
PaeI GCATGC 1 cut(s) 27
PcsI WCGNNNNNNNCGW 1 cut(s) 162
PctI GAATGC 2 cut(s) 25, 462
PfeI GAWTC 3 cut(s) 117, 532, 716
PflMI CCANNNNNTGG 2 cut(s) 545, 599
PkrI GCNGC 6 cut(s) 109, 271, 517, 684, 693, 948
Psp124BI GAGCTC 2 cut(s) 245, 286
Psp6I CCWGG 1 cut(s) 397
PspEI GGTNACC 1 cut(s) 275
PspGI CCWGG 1 cut(s) 397
PspN4I GGNNCC 3 cut(s) 252, 804, 861
PspPI GGNCC 1 cut(s) 803
PstNI CAGNNNCTG 1 cut(s) 688
PsuI RGATCY 2 cut(s) 829, 873
RsaI GTAC 1 cut(s) 1059
RsaNI GTAC 1 cut(s) 1058
RseI CAYNNNNRTG 3 cut(s) 129, 498, 923
SacI GAGCTC 2 cut(s) 245, 286
SaqAI TTAA 2 cut(s) 816, 845
SatI GCNGC 6 cut(s) 108, 270, 516, 683, 692, 947
Sau3AI GATC 7 cut(s) 34, 463, 554, 578, 754, 829, 873
Sau96I GGNCC 1 cut(s) 803
ScrFI CCNGG 1 cut(s) 399
SduI GDGCHC 2 cut(s) 245, 286
SfaNI GCATC 3 cut(s) 468, 675, 933
SinI GGWCC 1 cut(s) 803
SmiMI CAYNNNNRTG 3 cut(s) 129, 498, 923
SmlI CTYRAG 2 cut(s) 790, 836
SmoI CTYRAG 2 cut(s) 790, 836
SphI GCATGC 1 cut(s) 27
Sse9I AATT 1 cut(s) 63
SsiI CCGC 4 cut(s) 515, 518, 587, 857
SspMI CTAG 3 cut(s) 111, 798, 825
SstI GAGCTC 2 cut(s) 245, 286
StyD4I CCNGG 1 cut(s) 397
TaaI ACNGT 2 cut(s) 201, 1045
TaiI ACGT 2 cut(s) 168, 514
TaqI TCGA 1 cut(s) 156
TasI AATT 1 cut(s) 63
TatI WGTACW 1 cut(s) 1057
TauI GCSGC 1 cut(s) 518
TfiI GAWTC 3 cut(s) 117, 532, 716
Tru1I TTAA 2 cut(s) 816, 845
Tru9I TTAA 2 cut(s) 816, 845
TscAI CASTG 2 cut(s) 252, 1048
TseFI GTSAC 1 cut(s) 292
TseI GCWGC 5 cut(s) 107, 269, 682, 691, 946
Tsp45I GTSAC 1 cut(s) 292
TspDTI ATGAA 5 cut(s) 17, 32, 326, 510, 732
TspRI CASTG 2 cut(s) 252, 1048
Van91I CCANNNNNTGG 2 cut(s) 545, 599
VpaK11BI GGWCC 1 cut(s) 803
XapI RAATTY 1 cut(s) 63
XceI RCATGY 2 cut(s) 27, 134
XcmI CCANNNNNNNNNTGG 1 cut(s) 894
XspI CTAG 3 cut(s) 111, 798, 825
Zsp2I ATGCAT 1 cut(s) 25
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.