MD02G1056300.v1.1

Protein mrp homolog

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
Physical Location & Seq
Forward (+)
4558745 .. 4562969
4225 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1056300.v1.1.491

Sequence Viewer

Length: 1239 bp
ATGCAAATTCTTCACGTTCCTTCTTCGCTATATCTCTCATTTCAAAACGTAAAATCTCATGAAGATGCAGGATTAATATCTTCGTATGAGAAGCCTCTTCAATCATCAACGGCTGTATTTTGTTCGCTTCAGCAACAAAGACATGAAAGGTCCCAATGGGTTCATCGCAGAGGCTCTGTATTGAGCTCCCTTACAACTAAAGCTGCTTCTTTGGAAGATGCAGTTGGTGCTGATGAAATTTTGAAGGCGGAAGCTGAGAAAGATGTACTCAAAGCATTGTCTCAGATCATCGATCCAGACTTTGGGACGGACATTGTCTCGTGTGGATTTGTGAAAGATCTGGACATCAATGATGCTTCGGGTGAGGTTTCATTTCGGTTAGAGCTCACTACACCAGCATGTCCAATAAAGGACATGTTTGAACAACAGGCAAATGAGGTGGTGAACGCTCTTCCCTGGGTCAAGAATGTCAATGTGACTATGTCAGCACAGCCAGAGAAACTGATTTATGCCGGGCAACTTCCGTTCTTTTCTGGAGGTGTGGGAAAATCAACTGTAGCGGTAGACTTAGCATACACTTTGGCTGGCATGGGTGCTAGAGTTGGTATATTTGATGCTGACGTCTATGGTCCAAGTTTACCGACAATGGTCTCCCCTGAGAACCGAATACTAGTGATGGTCGTCCAGCAGTTCGGTATTCCGAATCTGTTTGATCTTCCCATTAGACCAACTCTATCTGCTTCCGGAGATAGTGGAACGCCCGAAGTGGGAGCTGATCCTCTTGGTGAAGTTTCGAAGACATTTCAGGGTCTCGGAATATGTGTTGTGCAACAGTGTGCTAAGATTCGCCAACAAGTGTCAACGGCTGTGATGTATGATAAATCTATCAGGGCTACACAAGTGAAGGTACCGGATTCAGATGAAGAATTTCTTCTTCACTCTGCCCAAAGTGTGGATGAGTGGACAGGGGAGCAAAAGTTGCAGTTCGCTGATGTTCCGGAAGATATAGAACCTGAAGAGATTCGTCCCATGGGAAACTATGCAGTGTCAATAACGTGGTCAGACGGATTTAGTCAGATTGCTCCTTACGATCAGTTGCAGACAATAGAGCGGCTAGTTGATGTTCCTCGACTAGTTCCTTATCAGGCAAGTTACCATTCTTACCATAGTTTTTCACTGCATCAGCCTCAAATGGTAATAATAACAATGCTGTTTTTCCCTTCCCTCATACAGGTTTGA

Protein Analysis

413

Amino Acids

45.26

Weight (kDa)

4.7

Isoelectric Point (pI)

42.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FeS_assembly_P PF01883 86 - 159 4.1e-20 Iron-sulfur cluster assembly protein
CbiA PF01656 177 - 214 4e-07 CobQ/CobB/MinD/ParA nucleotide binding domain
ParA PF10609 179 - 221 1.8e-14 NUBPL iron-transfer P-loop NTPase
GBBH-like_N PF06155 314 - 359 9.3e-07 Gamma-butyrobetaine hydroxylase-like, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012373)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 624
Acc65I GGTACC 1 cut(s) 907
AccB1I GGYRCC 1 cut(s) 907
AccB7I CCANNNNNTGG 2 cut(s) 302, 952
AccBSI CCGCTC 1 cut(s) 1111
AccI GTMKAC 1 cut(s) 564
AccIII TCCGGA 2 cut(s) 743, 997
AciI CCGC 3 cut(s) 248, 560, 1111
AclWI GGATC 2 cut(s) 287, 770
AcsI RAATTY 3 cut(s) 6, 237, 926
AcuI CTGAAG 2 cut(s) 113, 1035
AcyI GRCGYC 1 cut(s) 621
AfaI GTAC 2 cut(s) 267, 909
AfiI CCNNNNNNNGG 4 cut(s) 302, 767, 952, 1231
AflIII ACRYGT 1 cut(s) 414
AgsI TTSAA 4 cut(s) 44, 101, 244, 422
AhlI ACTAGT 2 cut(s) 670, 1132
AjnI CCWGG 1 cut(s) 455
AjuI GAANNNNNNNTTGG 2 cut(s) 207, 239
AluBI AGCT 5 cut(s) 186, 203, 254, 385, 773
AluI AGCT 5 cut(s) 186, 203, 254, 385, 773
Alw21I GWGCWC 2 cut(s) 188, 387
Alw26I GTCTC 4 cut(s) 285, 322, 655, 815
AlwI GGATC 2 cut(s) 287, 770
Aor13HI TCCGGA 2 cut(s) 743, 997
ApeKI GCWGC 1 cut(s) 203
ApoI RAATTY 3 cut(s) 6, 237, 926
AseI ATTAAT 1 cut(s) 74
Asp700I GAANNNNTTC 3 cut(s) 927, 930, 1020
Asp718I GGTACC 1 cut(s) 907
AspS9I GGNCC 2 cut(s) 150, 629
AsuC2I CCSGG 1 cut(s) 514
AsuHPI GGTGA 3 cut(s) 374, 454, 797
AsuII TTCGAA 1 cut(s) 794
AvaII GGWCC 2 cut(s) 150, 629
BanI GGYRCC 1 cut(s) 907
BanII GRGCYC 2 cut(s) 188, 387
BauI CACGAG 1 cut(s) 319
BbsI GAAGAC 1 cut(s) 803
Bbv12I GWGCWC 2 cut(s) 188, 387
BbvI GCAGC 1 cut(s) 190
BccI CCATC 1 cut(s) 670
BceAI ACGGC 2 cut(s) 126, 879
BciT130I CCWGG 1 cut(s) 457
BcnI CCSGG 1 cut(s) 514
BcoDI GTCTC 4 cut(s) 285, 322, 655, 815
BcuI ACTAGT 2 cut(s) 670, 1132
BfaI CTAG 4 cut(s) 597, 671, 1115, 1133
BfmI CTRYAG 1 cut(s) 555
BglII AGATCT 1 cut(s) 337
BisI GCNGC 2 cut(s) 204, 1112
BlsI GCNGC 2 cut(s) 205, 1113
Bme1390I CCNGG 2 cut(s) 457, 514
Bme18I GGWCC 2 cut(s) 150, 629
BmgT120I GGNCC 2 cut(s) 150, 629
BmiI GGNNCC 2 cut(s) 152, 909
BmrFI CCNGG 2 cut(s) 457, 514
BmsI GCATC 5 cut(s) 55, 208, 343, 604, 1189
BoxI GACNNNNGTC 1 cut(s) 647
BpiI GAAGAC 1 cut(s) 803
BpmI CTGGAG 1 cut(s) 555
Bpu14I TTCGAA 1 cut(s) 794
BpuMI CCSGG 1 cut(s) 514
Bsa29I ATCGAT 1 cut(s) 291
BsaBI GATNNNNATC 1 cut(s) 76
BsaHI GRCGYC 1 cut(s) 621
BsaI GGTCTC 2 cut(s) 655, 815
BsaJI CCNNGG 3 cut(s) 455, 456, 1029
BsaWI WCCGGW 3 cut(s) 743, 910, 997
BsaXI ACNNNNNCTCC 2 cut(s) 962, 992
Bsc4I CCNNNNNNNGG 4 cut(s) 302, 767, 952, 1231
Bse8I GATNNNNATC 1 cut(s) 76
BseAI TCCGGA 2 cut(s) 743, 997
BseBI CCWGG 1 cut(s) 457
BseCI ATCGAT 1 cut(s) 291
BseDI CCNNGG 3 cut(s) 455, 456, 1029
BseGI GGATG 1 cut(s) 961
BseJI GATNNNNATC 1 cut(s) 76
BseLI CCNNNNNNNGG 4 cut(s) 302, 767, 952, 1231
BseMII CTCAG 3 cut(s) 246, 296, 648
BseXI GCAGC 1 cut(s) 190
BshNI GGYRCC 1 cut(s) 907
BshVI ATCGAT 1 cut(s) 291
BsiHKAI GWGCWC 2 cut(s) 188, 387
BsiSI CCGG 4 cut(s) 513, 744, 911, 998
BslFI GGGAC 3 cut(s) 136, 319, 1011
BslI CCNNNNNNNGG 4 cut(s) 302, 767, 952, 1231
BsmAI GTCTC 4 cut(s) 285, 322, 655, 815
BsmFI GGGAC 3 cut(s) 136, 319, 1011
Bso31I GGTCTC 2 cut(s) 655, 815
Bsp119I TTCGAA 1 cut(s) 794
Bsp1286I GDGCHC 2 cut(s) 188, 387
Bsp13I TCCGGA 2 cut(s) 743, 997
Bsp143I GATC 6 cut(s) 285, 292, 337, 712, 775, 1090
Bsp19I CCATGG 1 cut(s) 1029
BspACI CCGC 3 cut(s) 248, 560, 1111
BspCNI CTCAG 3 cut(s) 247, 295, 649
BspDI ATCGAT 1 cut(s) 291
BspEI TCCGGA 2 cut(s) 743, 997
BspHI TCATGA 1 cut(s) 58
BspLI GGNNCC 2 cut(s) 152, 909
BspPI GGATC 2 cut(s) 287, 770
BspQI GCTCTTC 1 cut(s) 456
BspT104I TTCGAA 1 cut(s) 794
BspT107I GGYRCC 1 cut(s) 907
BspTNI GGTCTC 2 cut(s) 655, 815
BsrBI CCGCTC 1 cut(s) 1111
BssECI CCNNGG 3 cut(s) 455, 456, 1029
BssMI GATC 6 cut(s) 285, 292, 337, 712, 775, 1090
BssNI GRCGYC 1 cut(s) 621
BssSI CACGAG 1 cut(s) 319
BssT1I CCWWGG 1 cut(s) 1029
Bst2BI CACGAG 1 cut(s) 319
Bst2UI CCWGG 1 cut(s) 457
Bst4CI ACNGT 2 cut(s) 556, 834
Bst6I CTCTTC 3 cut(s) 102, 456, 1011
BstACI GRCGYC 1 cut(s) 621
BstAPI GCANNNNNTGC 2 cut(s) 227, 979
BstBI TTCGAA 1 cut(s) 794
BstC8I GCNNGC 1 cut(s) 586
BstDEI CTNAG 5 cut(s) 255, 282, 568, 657, 840
BstDSI CCRYGG 1 cut(s) 1029
BstENI CCTNNNNNAGG 1 cut(s) 1229
BstF5I GGATG 1 cut(s) 961
BstKTI GATC 6 cut(s) 288, 295, 340, 715, 778, 1093
BstMAI GTCTC 4 cut(s) 285, 322, 655, 815
BstMBI GATC 6 cut(s) 285, 292, 337, 712, 775, 1090
BstMWI GCNNNNNNNGC 2 cut(s) 227, 979
BstNI CCWGG 1 cut(s) 457
BstNSI RCATGY 2 cut(s) 402, 418
BstPAI GACNNNNGTC 1 cut(s) 647
BstSCI CCNGG 2 cut(s) 455, 512
BstSFI CTRYAG 1 cut(s) 555
BstV1I GCAGC 1 cut(s) 190
BstV2I GAAGAC 1 cut(s) 803
BstX2I RGATCY 1 cut(s) 337
BstYI RGATCY 1 cut(s) 337
Bsu15I ATCGAT 1 cut(s) 291
BsuTUI ATCGAT 1 cut(s) 291
BtgI CCRYGG 1 cut(s) 1029
BtgZI GCGATG 1 cut(s) 149
BtsCI GGATG 1 cut(s) 961
BtsI GCAGTG 2 cut(s) 1050, 1175
BtsIMutI CAGTG 3 cut(s) 839, 1050, 1175
Cac8I GCNNGC 1 cut(s) 586
CciI TCATGA 1 cut(s) 58
Cfr13I GGNCC 2 cut(s) 150, 629
ClaI ATCGAT 1 cut(s) 291
Csp6I GTAC 2 cut(s) 266, 908
CspCI CAANNNNNGTGG 2 cut(s) 420, 455
CviAII CATG 6 cut(s) 59, 143, 399, 415, 589, 1030
CviQI GTAC 2 cut(s) 266, 908
DdeI CTNAG 5 cut(s) 255, 282, 568, 657, 840
DpnI GATC 6 cut(s) 287, 294, 339, 714, 777, 1092
DpnII GATC 6 cut(s) 285, 292, 337, 712, 775, 1090
Eam1104I CTCTTC 3 cut(s) 102, 456, 1011
EarI CTCTTC 3 cut(s) 102, 456, 1011
EciI GGCGGA 1 cut(s) 263
Ecl136II GAGCTC 2 cut(s) 186, 385
Eco130I CCWWGG 1 cut(s) 1029
Eco24I GRGCYC 2 cut(s) 188, 387
Eco31I GGTCTC 2 cut(s) 655, 815
Eco47I GGWCC 2 cut(s) 150, 629
Eco53kI GAGCTC 2 cut(s) 186, 385
Eco57I CTGAAG 2 cut(s) 113, 1035
EcoICRI GAGCTC 2 cut(s) 186, 385
EcoNI CCTNNNNNAGG 1 cut(s) 1229
EcoO109I RGGNCCY 1 cut(s) 150
EcoRII CCWGG 1 cut(s) 455
EcoT14I CCWWGG 1 cut(s) 1029
EcoT38I GRGCYC 2 cut(s) 188, 387
ErhI CCWWGG 1 cut(s) 1029
FaeI CATG 6 cut(s) 62, 146, 402, 418, 592, 1033
FalI AAGNNNNNCTT 2 cut(s) 915, 947
FaqI GGGAC 3 cut(s) 136, 319, 1011
FatI CATG 6 cut(s) 58, 142, 398, 414, 588, 1029
FblI GTMKAC 1 cut(s) 564
Fnu4HI GCNGC 2 cut(s) 204, 1112
FokI GGATG 1 cut(s) 968
FriOI GRGCYC 2 cut(s) 188, 387
Fsp4HI GCNGC 2 cut(s) 204, 1112
FspBI CTAG 4 cut(s) 597, 671, 1115, 1133
GluI GCNGC 2 cut(s) 204, 1112
GsuI CTGGAG 1 cut(s) 555
HapII CCGG 4 cut(s) 513, 744, 911, 998
Hin1I GRCGYC 1 cut(s) 621
Hin1II CATG 6 cut(s) 62, 146, 402, 418, 592, 1033
HincII GTYRAC 1 cut(s) 861
HindII GTYRAC 1 cut(s) 861
HinfI GANTC 4 cut(s) 703, 844, 914, 1021
HpaII CCGG 4 cut(s) 513, 744, 911, 998
HphI GGTGA 3 cut(s) 374, 454, 797
Hpy166II GTNNAC 5 cut(s) 445, 565, 638, 861, 963
Hpy188I TCNGA 6 cut(s) 285, 702, 815, 919, 1063, 1077
Hpy188III TCNNGA 7 cut(s) 59, 296, 341, 463, 534, 744, 998
Hpy8I GTNNAC 5 cut(s) 445, 565, 638, 861, 963
HpyAV CCTTC 4 cut(s) 30, 238, 898, 1230
HpyCH4III ACNGT 2 cut(s) 556, 834
HpyCH4IV ACGT 4 cut(s) 15, 48, 621, 1055
HpyCH4V TGCA 8 cut(s) 4, 68, 221, 829, 982, 1043, 1099, 1180
HpyF10VI GCNNNNNNNGC 2 cut(s) 227, 979
HpyF3I CTNAG 5 cut(s) 255, 282, 568, 657, 840
HpySE526I ACGT 4 cut(s) 15, 48, 621, 1055
Hsp92I GRCGYC 1 cut(s) 621
Hsp92II CATG 6 cut(s) 62, 146, 402, 418, 592, 1033
Kpn2I TCCGGA 2 cut(s) 743, 997
KpnI GGTACC 1 cut(s) 911
Kzo9I GATC 6 cut(s) 285, 292, 337, 712, 775, 1090
LguI GCTCTTC 1 cut(s) 456
LmnI GCTCC 4 cut(s) 191, 770, 970, 1087
Lsp1109I GCAGC 1 cut(s) 190
LweI GCATC 5 cut(s) 55, 208, 343, 604, 1189
MaeI CTAG 4 cut(s) 597, 671, 1115, 1133
MaeII ACGT 4 cut(s) 15, 48, 621, 1055
MaeIII GTNAC 2 cut(s) 475, 1151
MalI GATC 6 cut(s) 287, 294, 339, 714, 777, 1092
MbiI CCGCTC 1 cut(s) 1111
MboI GATC 6 cut(s) 285, 292, 337, 712, 775, 1090
MflI RGATCY 1 cut(s) 337
MhlI GDGCHC 2 cut(s) 188, 387
MluCI AATT 3 cut(s) 6, 237, 926
MnlI CCTC 9 cut(s) 105, 164, 358, 430, 530, 789, 1137, 1197, 1235
MroI TCCGGA 2 cut(s) 743, 997
MroXI GAANNNNTTC 3 cut(s) 927, 930, 1020
MseI TTAA 1 cut(s) 74
MslI CAYNNNNRTG 2 cut(s) 63, 397
MspI CCGG 4 cut(s) 513, 744, 911, 998
MspR9I CCNGG 2 cut(s) 457, 514
MvaI CCWGG 1 cut(s) 457
MwoI GCNNNNNNNGC 2 cut(s) 227, 979
NciI CCSGG 1 cut(s) 514
NcoI CCATGG 1 cut(s) 1029
NdeII GATC 6 cut(s) 285, 292, 337, 712, 775, 1090
NlaIII CATG 6 cut(s) 62, 146, 402, 418, 592, 1033
NlaIV GGNNCC 2 cut(s) 152, 909
NmuCI GTSAC 1 cut(s) 475
NspI RCATGY 2 cut(s) 402, 418
NspV TTCGAA 1 cut(s) 794
PagI TCATGA 1 cut(s) 58
PasI CCCWGGG 1 cut(s) 456
PciI ACATGT 1 cut(s) 414
PciSI GCTCTTC 1 cut(s) 456
PdmI GAANNNNTTC 3 cut(s) 927, 930, 1020
PfeI GAWTC 4 cut(s) 703, 844, 914, 1021
PflFI GACNNNGTC 2 cut(s) 314, 481
PflMI CCANNNNNTGG 2 cut(s) 302, 952
PkrI GCNGC 2 cut(s) 205, 1113
PpuMI RGGWCCY 1 cut(s) 150
PscI ACATGT 1 cut(s) 414
PshAI GACNNNNGTC 1 cut(s) 647
PshBI ATTAAT 1 cut(s) 74
Psp124BI GAGCTC 2 cut(s) 188, 387
Psp5II RGGWCCY 1 cut(s) 150
Psp6I CCWGG 1 cut(s) 455
PspGI CCWGG 1 cut(s) 455
PspN4I GGNNCC 2 cut(s) 152, 909
PspPI GGNCC 2 cut(s) 150, 629
PspPPI RGGWCCY 1 cut(s) 150
PsuI RGATCY 1 cut(s) 337
PsyI GACNNNGTC 2 cut(s) 314, 481
RsaI GTAC 2 cut(s) 267, 909
RsaNI GTAC 2 cut(s) 266, 908
RseI CAYNNNNRTG 2 cut(s) 63, 397
SacI GAGCTC 2 cut(s) 188, 387
SapI GCTCTTC 1 cut(s) 456
SaqAI TTAA 1 cut(s) 74
SatI GCNGC 2 cut(s) 204, 1112
Sau3AI GATC 6 cut(s) 285, 292, 337, 712, 775, 1090
Sau96I GGNCC 2 cut(s) 150, 629
ScrFI CCNGG 2 cut(s) 457, 514
SduI GDGCHC 2 cut(s) 188, 387
SfaNI GCATC 5 cut(s) 55, 208, 343, 604, 1189
SfcI CTRYAG 1 cut(s) 555
SfuI TTCGAA 1 cut(s) 794
SinI GGWCC 2 cut(s) 150, 629
SmiMI CAYNNNNRTG 2 cut(s) 63, 397
SpeI ACTAGT 2 cut(s) 670, 1132
Sse9I AATT 3 cut(s) 6, 237, 926
SsiI CCGC 3 cut(s) 248, 560, 1111
SspMI CTAG 4 cut(s) 597, 671, 1115, 1133
SstI GAGCTC 2 cut(s) 188, 387
StyD4I CCNGG 2 cut(s) 455, 512
StyI CCWWGG 1 cut(s) 1029
TaaI ACNGT 2 cut(s) 556, 834
TaiI ACGT 4 cut(s) 18, 51, 624, 1058
TaqI TCGA 3 cut(s) 291, 794, 1129
TasI AATT 3 cut(s) 6, 237, 926
TatI WGTACW 1 cut(s) 265
TauI GCSGC 1 cut(s) 1114
TfiI GAWTC 4 cut(s) 703, 844, 914, 1021
Tru1I TTAA 1 cut(s) 74
Tru9I TTAA 1 cut(s) 74
TscAI CASTG 3 cut(s) 839, 1050, 1182
TseFI GTSAC 1 cut(s) 475
TseI GCWGC 1 cut(s) 203
Tsp45I GTSAC 1 cut(s) 475
TspDTI ATGAA 6 cut(s) 75, 152, 159, 249, 360, 936
TspGWI ACGGA 3 cut(s) 323, 513, 1080
TspRI CASTG 3 cut(s) 839, 1050, 1182
Tth111I GACNNNGTC 2 cut(s) 314, 481
Van91I CCANNNNNTGG 2 cut(s) 302, 952
VpaK11BI GGWCC 2 cut(s) 150, 629
VspI ATTAAT 1 cut(s) 74
XagI CCTNNNNNAGG 1 cut(s) 1229
XapI RAATTY 3 cut(s) 6, 237, 926
XceI RCATGY 2 cut(s) 402, 418
XmiI GTMKAC 1 cut(s) 564
XmnI GAANNNNTTC 3 cut(s) 927, 930, 1020
XspI CTAG 4 cut(s) 597, 671, 1115, 1133
ZraI GACGTC 1 cut(s) 622
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.