pycom15g16970

Protein mrp homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0012373
Physical Location & Seq
Forward (+)
11910259 .. 11913821
3563 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g16970.9

Sequence Viewer

Length: 1254 bp
ATGTTTGAACAACAGGCAAATGAGGTGGTGAATGCACTTCCTTGGGTTAAGAGTGTCAGTGTGACTATGTCAGCACAGCCAGCGAAACCAATTTATGCTGGGCAACTTCCGGCAGGGTTACAGACGATTTCAAATGTTATAGCAGTTTCTAGTTGTAAGGGAGGTGTGGGAAAATCAACTGTAGCGGTAAACTTGGCATACACTTTGGCTGGCATGGGTGCTAGGGTTGGTATATTTGATGCTGATGTCTATGGTCCAAGTTTACCGACAATGGTCTCCCCTGAGAACCGAATACTAGTGATGAACCCAGAGACGAAAACAATAATTCCTACAGAATACTTGGGAGTGAAATTGGTGTCTTTTGGATTTGCCGGGCAAGGGCGTGCTATAATGCGAGGCCCCATGGTTTCTGGTGTCATCAACCAACTTCTAACTACAACTGAGTGGGGAGAGCTGGATTACCTTGTTATTGACATGCCTCCTGGAACTGGTGATATTCAGCTTACGTTGTGCCAGGTTGTTCCATTAACTGCCGCTGTTATCGTTACCACCCCTCAAAAGCTAGCTTTTATTGATGTTGCAAAAGGAGTTCGCATGTTTTCAAAGCTTAAGGTGCCGTGTGTTGCTGTAGTCGAGAATATGAGCCATTTTGAAGCTGATGGGAAACGCTATTACCCATTTGGTAAAGGATCAGGCTCTCAGGTTGTACAGCAGTTTGGTATCCCGAATCTGTTTGATCTTCCCATTAGACCAACTCTATCTGCTTCCGGAGATAGTGGAACGCCGGAAGTGGTAGCTGATCCTCTAGGTGAAGTTTCGAAGACATTTCAGGAGCTTGGGATATGTGTTGTGCAACAGTGTGCTAAGATTCGCCAACAAGTGTCAACTGCTGTGATGTACGATAAATCTATCAAGGCAATAAGAGTGAAGGTACCGGATTCAGATGAAGAATTTCTTCTCCATCCTGCGACTGTGAGGCGGAATGACCGCTCTGCACAAAGTGTGGATGAGTGGACGGGGGAGCAAAAGTTGCAGTTTGCTGATGTTCCGGAAGACATAGAACCTGAAGAGATTCGGCCTATGGGGAATTATGCCGTTTCAATAACGTGGCCAGACGGATTTAGTCAGATTGCACCCTACGATCAGTTGCAGACAATCGAGCGGCTAGTTGATGTTCCTCGGCTAGTTCCGTCCCAGGCAAGTTACCATTCTTACCATAATTTTTCACTGCATCAGTTTGATTGCTTCAAGTGA

Protein Analysis

418

Amino Acids

45.4

Weight (kDa)

5.28

Isoelectric Point (pI)

36.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012373)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G24430
fragaria_vesca FvH4_1g05310 FvH4_1g05310 FvH4_1g05310 FvH4_1g05310
malus_domestica MD02G1056300.v1.1 MD15G1189200.v1.1
prunus_persica Prupe.7G227600_v2.0.a1
pyrus_communis pycom15g16970
rosa_chinensis RchiOBHm_Chr2g0091011
rosa_laevigata RLG00000016166
rosa_multiflora Rmu_sc0003305.1_g000005
rosa_roxburghii Rroxscaffold_2G00150690
rosa_rugosa Rorug02G0011400
rosa_samantha Rh2AG057800 Rh2BG056100 Rh2CG058400 Rh2DG057500
rosa_wichuraiana Rw2G005150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 931
AccB1I GGYRCC 2 cut(s) 613, 931
AccBSI CCGCTC 2 cut(s) 990, 1162
AccIII TCCGGA 2 cut(s) 767, 1048
AciI CCGC 5 cut(s) 185, 534, 979, 988, 1162
AclWI GGATC 2 cut(s) 697, 794
AcoI YGGCCR 1 cut(s) 1109
AcsI RAATTY 1 cut(s) 950
AcuI CTGAAG 1 cut(s) 1086
AdeI CACNNNGTG 1 cut(s) 1001
AfaI GTAC 3 cut(s) 708, 899, 933
AfiI CCNNNNNNNGG 2 cut(s) 378, 488
AflII CTTAAG 1 cut(s) 608
AgsI TTSAA 6 cut(s) 8, 132, 603, 653, 1101, 1249
AhlI ACTAGT 1 cut(s) 295
AjnI CCWGG 3 cut(s) 481, 513, 1194
AluBI AGCT 8 cut(s) 454, 502, 562, 566, 607, 656, 797, 835
AluI AGCT 8 cut(s) 454, 502, 562, 566, 607, 656, 797, 835
Alw26I GTCTC 2 cut(s) 280, 305
AlwI GGATC 2 cut(s) 697, 794
Aor13HI TCCGGA 2 cut(s) 767, 1048
AoxI GGCC 3 cut(s) 397, 1076, 1109
ApoI RAATTY 1 cut(s) 950
Asp700I GAANNNNTTC 3 cut(s) 951, 954, 1071
Asp718I GGTACC 1 cut(s) 931
AspS9I GGNCC 2 cut(s) 254, 398
AsuC2I CCSGG 1 cut(s) 373
AsuHPI GGTGA 3 cut(s) 40, 503, 821
AsuII TTCGAA 1 cut(s) 818
AsuNHI GCTAGC 1 cut(s) 562
AvaII GGWCC 1 cut(s) 254
BalI TGGCCA 1 cut(s) 1111
BanI GGYRCC 2 cut(s) 613, 931
BbsI GAAGAC 2 cut(s) 827, 1059
BccI CCATC 2 cut(s) 653, 969
BceAI ACGGC 2 cut(s) 601, 1079
BciT130I CCWGG 3 cut(s) 483, 515, 1196
BciVI GTATCC 1 cut(s) 731
BcnI CCSGG 1 cut(s) 373
BcoDI GTCTC 2 cut(s) 280, 305
BcuI ACTAGT 1 cut(s) 295
BfaI CTAG 7 cut(s) 150, 222, 296, 563, 806, 1166, 1184
BfmI CTRYAG 3 cut(s) 180, 330, 627
BfrI CTTAAG 1 cut(s) 608
BfuI GTATCC 1 cut(s) 731
BisI GCNGC 2 cut(s) 534, 1163
BlsI GCNGC 2 cut(s) 535, 1164
Bme1390I CCNGG 4 cut(s) 373, 483, 515, 1196
Bme18I GGWCC 1 cut(s) 254
BmgT120I GGNCC 2 cut(s) 254, 398
BmiI GGNNCC 3 cut(s) 400, 615, 933
BmrFI CCNGG 4 cut(s) 373, 483, 515, 1196
BmsI GCATC 2 cut(s) 229, 1240
BmtI GCTAGC 1 cut(s) 566
BoxI GACNNNNGTC 1 cut(s) 272
BpiI GAAGAC 2 cut(s) 827, 1059
Bpu14I TTCGAA 1 cut(s) 818
BpuMI CCSGG 1 cut(s) 373
BsaI GGTCTC 1 cut(s) 280
BsaJI CCNNGG 4 cut(s) 41, 402, 1178, 1194
BsaWI WCCGGW 3 cut(s) 767, 934, 1048
BsaXI ACNNNNNCTCC 2 cut(s) 1013, 1043
Bsc4I CCNNNNNNNGG 2 cut(s) 378, 488
Bse1I ACTGG 1 cut(s) 493
BseAI TCCGGA 2 cut(s) 767, 1048
BseBI CCWGG 3 cut(s) 483, 515, 1196
BseDI CCNNGG 4 cut(s) 41, 402, 1178, 1194
BseGI GGATG 2 cut(s) 961, 1012
BseLI CCNNNNNNNGG 2 cut(s) 378, 488
BseMII CTCAG 3 cut(s) 273, 432, 713
BseNI ACTGG 1 cut(s) 493
BseYI CCCAGC 1 cut(s) 98
BsgI GTGCAG 1 cut(s) 978
BshFI GGCC 3 cut(s) 399, 1078, 1111
BshNI GGYRCC 2 cut(s) 613, 931
BsiSI CCGG 6 cut(s) 110, 372, 768, 785, 935, 1049
BslFI GGGAC 1 cut(s) 1177
BslI CCNNNNNNNGG 2 cut(s) 378, 488
BsmAI GTCTC 2 cut(s) 280, 305
BsmBI CGTCTC 1 cut(s) 305
BsmFI GGGAC 1 cut(s) 1177
BsmI GAATGC 1 cut(s) 37
BsnI GGCC 3 cut(s) 399, 1078, 1111
Bso31I GGTCTC 1 cut(s) 280
Bsp119I TTCGAA 1 cut(s) 818
Bsp13I TCCGGA 2 cut(s) 767, 1048
Bsp1407I TGTACA 1 cut(s) 706
Bsp143I GATC 4 cut(s) 689, 736, 799, 1141
Bsp19I CCATGG 1 cut(s) 402
BspACI CCGC 5 cut(s) 185, 534, 979, 988, 1162
BspANI GGCC 3 cut(s) 399, 1078, 1111
BspCNI CTCAG 3 cut(s) 274, 433, 712
BspEI TCCGGA 2 cut(s) 767, 1048
BspLI GGNNCC 3 cut(s) 400, 615, 933
BspOI GCTAGC 1 cut(s) 566
BspPI GGATC 2 cut(s) 697, 794
BspT104I TTCGAA 1 cut(s) 818
BspT107I GGYRCC 2 cut(s) 613, 931
BspTI CTTAAG 1 cut(s) 608
BspTNI GGTCTC 1 cut(s) 280
BsrBI CCGCTC 2 cut(s) 990, 1162
BsrGI TGTACA 1 cut(s) 706
BsrI ACTGG 1 cut(s) 493
BssECI CCNNGG 4 cut(s) 41, 402, 1178, 1194
BssMI GATC 4 cut(s) 689, 736, 799, 1141
BssT1I CCWWGG 2 cut(s) 41, 402
Bst2UI CCWGG 3 cut(s) 483, 515, 1196
Bst4CI ACNGT 3 cut(s) 181, 858, 973
Bst6I CTCTTC 1 cut(s) 1062
BstAFI CTTAAG 1 cut(s) 608
BstAPI GCANNNNNTGC 1 cut(s) 1030
BstAUI TGTACA 1 cut(s) 706
BstBI TTCGAA 1 cut(s) 818
BstC8I GCNNGC 4 cut(s) 81, 211, 384, 564
BstDEI CTNAG 4 cut(s) 282, 441, 699, 864
BstDSI CCRYGG 1 cut(s) 402
BstF5I GGATG 2 cut(s) 961, 1012
BstKTI GATC 4 cut(s) 692, 739, 802, 1144
BstMAI GTCTC 2 cut(s) 280, 305
BstMBI GATC 4 cut(s) 689, 736, 799, 1141
BstMWI GCNNNNNNNGC 3 cut(s) 80, 613, 1030
BstNI CCWGG 3 cut(s) 483, 515, 1196
BstNSI RCATGY 2 cut(s) 478, 598
BstPAI GACNNNNGTC 1 cut(s) 272
BstSCI CCNGG 4 cut(s) 371, 481, 513, 1194
BstSFI CTRYAG 3 cut(s) 180, 330, 627
BstV2I GAAGAC 2 cut(s) 827, 1059
BsuI GTATCC 1 cut(s) 731
BsuRI GGCC 3 cut(s) 399, 1078, 1111
BtgI CCRYGG 1 cut(s) 402
BtsCI GGATG 2 cut(s) 961, 1012
BtsI GCAGTG 1 cut(s) 1226
BtsIMutI CAGTG 3 cut(s) 64, 863, 1226
Cac8I GCNNGC 4 cut(s) 81, 211, 384, 564
Cfr13I GGNCC 2 cut(s) 254, 398
Csp6I GTAC 3 cut(s) 707, 898, 932
CspCI CAANNNNNGTGG 2 cut(s) 6, 41
CviAII CATG 4 cut(s) 214, 403, 475, 595
CviQI GTAC 3 cut(s) 707, 898, 932
DdeI CTNAG 4 cut(s) 282, 441, 699, 864
DpnI GATC 4 cut(s) 691, 738, 801, 1143
DpnII GATC 4 cut(s) 689, 736, 799, 1141
DraIII CACNNNGTG 1 cut(s) 1001
EaeI YGGCCR 1 cut(s) 1109
Eam1104I CTCTTC 1 cut(s) 1062
EarI CTCTTC 1 cut(s) 1062
EciI GGCGGA 1 cut(s) 994
Eco130I CCWWGG 2 cut(s) 41, 402
Eco31I GGTCTC 1 cut(s) 280
Eco47I GGWCC 1 cut(s) 254
Eco57I CTGAAG 1 cut(s) 1086
EcoO109I RGGNCCY 1 cut(s) 398
EcoRII CCWGG 3 cut(s) 481, 513, 1194
EcoT14I CCWWGG 2 cut(s) 41, 402
ErhI CCWWGG 2 cut(s) 41, 402
Esp3I CGTCTC 1 cut(s) 305
FaeI CATG 4 cut(s) 217, 406, 478, 598
FalI AAGNNNNNCTT 2 cut(s) 939, 971
FaqI GGGAC 1 cut(s) 1177
FatI CATG 4 cut(s) 213, 402, 474, 594
Fnu4HI GCNGC 2 cut(s) 534, 1163
FokI GGATG 2 cut(s) 948, 1019
Fsp4HI GCNGC 2 cut(s) 534, 1163
FspBI CTAG 7 cut(s) 150, 222, 296, 563, 806, 1166, 1184
GluI GCNGC 2 cut(s) 534, 1163
GsaI CCCAGC 1 cut(s) 102
HaeIII GGCC 3 cut(s) 399, 1078, 1111
HapII CCGG 6 cut(s) 110, 372, 768, 785, 935, 1049
Hin1II CATG 4 cut(s) 217, 406, 478, 598
HincII GTYRAC 1 cut(s) 885
HindII GTYRAC 1 cut(s) 885
HindIII AAGCTT 1 cut(s) 605
HinfI GANTC 4 cut(s) 727, 868, 938, 1072
HpaII CCGG 6 cut(s) 110, 372, 768, 785, 935, 1049
HphI GGTGA 3 cut(s) 40, 503, 821
Hpy166II GTNNAC 4 cut(s) 190, 263, 885, 1014
Hpy188I TCNGA 2 cut(s) 943, 1128
Hpy188III TCNNGA 5 cut(s) 634, 724, 768, 830, 1049
Hpy8I GTNNAC 4 cut(s) 190, 263, 885, 1014
HpyAV CCTTC 1 cut(s) 922
HpyCH4III ACNGT 3 cut(s) 181, 858, 973
HpyCH4IV ACGT 2 cut(s) 506, 1106
HpyCH4V TGCA 8 cut(s) 35, 581, 853, 995, 1033, 1133, 1150, 1231
HpyF10VI GCNNNNNNNGC 3 cut(s) 80, 613, 1030
HpyF3I CTNAG 4 cut(s) 282, 441, 699, 864
HpySE526I ACGT 2 cut(s) 506, 1106
Hsp92II CATG 4 cut(s) 217, 406, 478, 598
Kpn2I TCCGGA 2 cut(s) 767, 1048
KpnI GGTACC 1 cut(s) 935
Kzo9I GATC 4 cut(s) 689, 736, 799, 1141
LmnI GCTCC 2 cut(s) 832, 1021
LweI GCATC 2 cut(s) 229, 1240
MaeI CTAG 7 cut(s) 150, 222, 296, 563, 806, 1166, 1184
MaeII ACGT 2 cut(s) 506, 1106
MaeIII GTNAC 4 cut(s) 61, 117, 544, 1202
MalI GATC 4 cut(s) 691, 738, 801, 1143
MbiI CCGCTC 2 cut(s) 990, 1162
MboI GATC 4 cut(s) 689, 736, 799, 1141
MboII GAAGA 6 cut(s) 731, 832, 947, 959, 1064, 1079
MlsI TGGCCA 1 cut(s) 1111
MluCI AATT 6 cut(s) 90, 324, 350, 950, 1087, 1219
MluNI TGGCCA 1 cut(s) 1111
MnlI CCTC 8 cut(s) 16, 155, 389, 489, 564, 813, 969, 1188
Mox20I TGGCCA 1 cut(s) 1111
MroI TCCGGA 2 cut(s) 767, 1048
MroXI GAANNNNTTC 3 cut(s) 951, 954, 1071
MscI TGGCCA 1 cut(s) 1111
MseI TTAA 3 cut(s) 48, 527, 609
Msp20I TGGCCA 1 cut(s) 1111
MspA1I CMGCKG 1 cut(s) 536
MspCI CTTAAG 1 cut(s) 608
MspI CCGG 6 cut(s) 110, 372, 768, 785, 935, 1049
MspR9I CCNGG 4 cut(s) 373, 483, 515, 1196
Mva1269I GAATGC 1 cut(s) 37
MvaI CCWGG 3 cut(s) 483, 515, 1196
MwoI GCNNNNNNNGC 3 cut(s) 80, 613, 1030
NciI CCSGG 1 cut(s) 373
NcoI CCATGG 1 cut(s) 402
NdeII GATC 4 cut(s) 689, 736, 799, 1141
NheI GCTAGC 1 cut(s) 562
NlaIII CATG 4 cut(s) 217, 406, 478, 598
NlaIV GGNNCC 3 cut(s) 400, 615, 933
NmeAIII GCCGAG 1 cut(s) 1159
NmuCI GTSAC 1 cut(s) 61
NspI RCATGY 2 cut(s) 478, 598
NspV TTCGAA 1 cut(s) 818
PctI GAATGC 1 cut(s) 37
PdmI GAANNNNTTC 3 cut(s) 951, 954, 1071
PfeI GAWTC 4 cut(s) 727, 868, 938, 1072
PflFI GACNNNGTC 1 cut(s) 67
PfoI TCCNGGA 1 cut(s) 481
PkrI GCNGC 2 cut(s) 535, 1164
PshAI GACNNNNGTC 1 cut(s) 272
Psp6I CCWGG 3 cut(s) 481, 513, 1194
PspFI CCCAGC 1 cut(s) 98
PspGI CCWGG 3 cut(s) 481, 513, 1194
PspN4I GGNNCC 3 cut(s) 400, 615, 933
PspPI GGNCC 2 cut(s) 254, 398
PsyI GACNNNGTC 1 cut(s) 67
RsaI GTAC 3 cut(s) 708, 899, 933
RsaNI GTAC 3 cut(s) 707, 898, 932
SaqAI TTAA 3 cut(s) 48, 527, 609
SatI GCNGC 2 cut(s) 534, 1163
Sau3AI GATC 4 cut(s) 689, 736, 799, 1141
Sau96I GGNCC 2 cut(s) 254, 398
ScrFI CCNGG 4 cut(s) 373, 483, 515, 1196
SfaNI GCATC 2 cut(s) 229, 1240
SfcI CTRYAG 3 cut(s) 180, 330, 627
SfuI TTCGAA 1 cut(s) 818
SinI GGWCC 1 cut(s) 254
SmlI CTYRAG 1 cut(s) 608
SmoI CTYRAG 1 cut(s) 608
SpeI ACTAGT 1 cut(s) 295
Sse9I AATT 6 cut(s) 90, 324, 350, 950, 1087, 1219
SsiI CCGC 5 cut(s) 185, 534, 979, 988, 1162
SspMI CTAG 7 cut(s) 150, 222, 296, 563, 806, 1166, 1184
StyD4I CCNGG 4 cut(s) 371, 481, 513, 1194
StyI CCWWGG 2 cut(s) 41, 402
TaaI ACNGT 3 cut(s) 181, 858, 973
TaiI ACGT 2 cut(s) 509, 1109
TaqI TCGA 3 cut(s) 633, 818, 1158
TasI AATT 6 cut(s) 90, 324, 350, 950, 1087, 1219
TatI WGTACW 1 cut(s) 706
TauI GCSGC 2 cut(s) 536, 1165
TfiI GAWTC 4 cut(s) 727, 868, 938, 1072
Tru1I TTAA 3 cut(s) 48, 527, 609
Tru9I TTAA 3 cut(s) 48, 527, 609
TscAI CASTG 3 cut(s) 64, 863, 1233
TseFI GTSAC 1 cut(s) 61
Tsp45I GTSAC 1 cut(s) 61
TspDTI ATGAA 2 cut(s) 317, 960
TspGWI ACGGA 2 cut(s) 1131, 1179
TspRI CASTG 3 cut(s) 64, 863, 1233
Tth111I GACNNNGTC 1 cut(s) 67
Vha464I CTTAAG 1 cut(s) 608
VpaK11BI GGWCC 1 cut(s) 254
XapI RAATTY 1 cut(s) 950
XceI RCATGY 2 cut(s) 478, 598
XmnI GAANNNNTTC 3 cut(s) 951, 954, 1071
XspI CTAG 7 cut(s) 150, 222, 296, 563, 806, 1166, 1184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.