RLG00000016166

Protein mrp homolog

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
4400578 .. 4406531
5954 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016166

Sequence Viewer

Length: 1515 bp
ATGCAACTTCTTCACGTTCCTTCTTCACCATACCTCTCTTTTCAAACCCTAAAAACACATTCAGAAGCAGCAGGAGGACTAGCTTTATATGAGAAGCCTCTTCTATCATCATCTTCTATATTTTGTTCTCTTCAGCAAGAAAGAAATGATGTACTGAAAGCATTGTCTCAAATCATTGATCCAGACTTCGGGACAGACATTGTCTCATGTGGATTTGTGAAAGACCTGCAAATCAATGAGGCTTTGGGAGAGGTTTCATTTCGGTTAGAGCTCACTACACCAGCATGTCCAGTAAAGGACATGTTTGAGCAAAAGGCAAATGAGGTGGTGAACGACCTTTCTTGGGTCAAGAATGTCAATGTGACTATGTCAGCACAACCTGCAAAACCCCTTTATGCCGGGCAACTTCCAGCAGGGTTACGGACAATTTCAAATATTGTGGCAGTTTCTAGTTGCAAGGGAGGCGTGGGAAAATCAACTGTAGCAGTAAACTTAGCATATACTTTGGCTGGTATGGGTGCTAGAGTTGGTATATTTGATGCTGATGTCTATGGTCCTAGTCTACCAACGATGGTCTCCCCTGAAAACCGAATACTAGTAATGAACCCAGAGAAGAAAACCATTATTCCCACTGAATACTTGGGAGTGAAATTGGTGTCTTTTGGATTTGCTGGACAAGGTCGTGCAATAATGAGAGGTCCAATGGTCTCTGGGGTTATTGATCAGCTTCTAACTACAACAGAGTGGGGAGAACTGGATTATCTTGTTGTTGACATGCCCCCTGGAACTGGTGATATTCAGCTTACTTTGTGCCAGGTAGTTCCATTGACTGCTGCTGTTATTGTTACCACCCCTCAAAAGCTAGCGTTTATTGATGTCGCAAAAGGAGTTCGCATGTTTTCAAAGTTGAAGGTGCCATGTGTTGCTGTAGTTGAGAATATGAGCCATTTTGATGCTGATGGGAAGCGTCATTACCCATTTGGTCAAGGCTCAGGCTCAGAGGTTGTAAAGCAGTTTGGTATCCCAAATCTATTTGATCTTCCCATTAGACCAACTCTATCTGCTTCTGGAGATAGTGGGGTACCTGAAGTGGTAGCTGATCCTCTAGGTGAAGTTTCTAAGACATTTCAGGAGCTCGGAATATGTGTTGTGCAACAGTGTGCTAAGATTCGCCAACAAGTCTCAACAGCAGTGACCTATGATAAATCTCTCAAGGCAATAAGAGTGAAGGTACCAGATTCAGATGATGAATTTCTTCTCCATCCTGCAACTGTGAGACGGAATGACCGCTCTGCCCAAAGTGTGGATGAGTGGACAGGGGAGCAAAAATTGCAGTATAATGATGTTCCAGAAGATATTGAACCTGAAGAAATTCGGCCCATGGGAAATTATGCTGTGTCAATAACATGGCCAGACGGATTTAGTCAGATCGCACCCTATGATCAGCTGCAGACAATGGAGCGGTTAGTTGATGAATTTAATCAATTCCTTCCCCCGATTCCTTCCCAGGTATGA

Protein Analysis

505

Amino Acids

54.83

Weight (kDa)

4.92

Isoelectric Point (pI)

38.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FeS_assembly_P PF01883 49 - 121 9.9e-18 Iron-sulfur cluster assembly protein
ParA PF10609 143 - 379 2.9e-81 NUBPL iron-transfer P-loop NTPase
AAA_31 PF13614 145 - 185 5.6e-08 AAA domain
MipZ PF09140 146 - 292 1.9e-06 ATPase MipZ
CbiA PF01656 147 - 269 1.8e-09 CobQ/CobB/MinD/ParA nucleotide binding domain
GBBH-like_N PF06155 412 - 476 3e-08 Gamma-butyrobetaine hydroxylase-like, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012373)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 234, 388
Acc65I GGTACC 2 cut(s) 1081, 1231
AccB1I GGYRCC 3 cut(s) 913, 1081, 1231
AccB7I CCANNNNNTGG 1 cut(s) 1303
AccBSI CCGCTC 2 cut(s) 1290, 1462
AccI GTMKAC 1 cut(s) 562
AciI CCGC 2 cut(s) 1288, 1462
AclWI GGATC 2 cut(s) 173, 1094
AcoI YGGCCR 1 cut(s) 1409
AcsI RAATTY 3 cut(s) 1250, 1371, 1475
AcuI CTGAAG 3 cut(s) 116, 1107, 1386
AfaI GTAC 3 cut(s) 153, 1083, 1233
AfiI CCNNNNNNNGG 4 cut(s) 188, 343, 788, 1303
AflIII ACRYGT 1 cut(s) 300
AgsI TTSAA 5 cut(s) 44, 432, 903, 910, 1361
AhlI ACTAGT 1 cut(s) 595
AjnI CCWGG 3 cut(s) 781, 813, 1506
AluBI AGCT 8 cut(s) 83, 271, 727, 802, 862, 1097, 1135, 1447
AluI AGCT 8 cut(s) 83, 271, 727, 802, 862, 1097, 1135, 1447
Alw21I GWGCWC 2 cut(s) 273, 1137
Alw26I GTCTC 6 cut(s) 171, 208, 580, 712, 1186, 1270
AlwI GGATC 2 cut(s) 173, 1094
AoxI GGCC 2 cut(s) 1376, 1409
ApeKI GCWGC 3 cut(s) 68, 833, 1447
ApoI RAATTY 3 cut(s) 1250, 1371, 1475
Asp700I GAANNNNTTC 2 cut(s) 1254, 1371
Asp718I GGTACC 2 cut(s) 1081, 1231
AspS9I GGNCC 3 cut(s) 554, 698, 1377
AsuC2I CCSGG 1 cut(s) 400
AsuHPI GGTGA 4 cut(s) 18, 340, 803, 1121
AsuNHI GCTAGC 1 cut(s) 862
AvaII GGWCC 2 cut(s) 554, 698
BalI TGGCCA 1 cut(s) 1411
BanI GGYRCC 3 cut(s) 913, 1081, 1231
BanII GRGCYC 2 cut(s) 273, 1137
BarI GAAGNNNNNNTAC 2 cut(s) 956, 988
Bbv12I GWGCWC 2 cut(s) 273, 1137
BbvI GCAGC 3 cut(s) 80, 820, 1434
BccI CCATC 3 cut(s) 565, 953, 1269
BciT130I CCWGG 3 cut(s) 783, 815, 1508
BciVI GTATCC 1 cut(s) 1031
BclI TGATCA 2 cut(s) 721, 1441
BcnI CCSGG 1 cut(s) 400
BcoDI GTCTC 6 cut(s) 171, 208, 580, 712, 1186, 1270
BcuI ACTAGT 1 cut(s) 595
BfaI CTAG 7 cut(s) 80, 450, 522, 558, 596, 863, 1106
BfmI CTRYAG 3 cut(s) 480, 927, 1448
BfuAI ACCTGC 2 cut(s) 234, 388
BfuI GTATCC 1 cut(s) 1031
BisI GCNGC 3 cut(s) 69, 834, 1448
BlsI GCNGC 3 cut(s) 70, 835, 1449
Bme1390I CCNGG 4 cut(s) 400, 783, 815, 1508
Bme18I GGWCC 2 cut(s) 554, 698
BmgT120I GGNCC 3 cut(s) 554, 698, 1377
BmiI GGNNCC 3 cut(s) 915, 1083, 1233
BmrFI CCNGG 4 cut(s) 400, 783, 815, 1508
BmsI GCATC 2 cut(s) 529, 943
BmtI GCTAGC 1 cut(s) 866
BpmI CTGGAG 1 cut(s) 1089
Bpu10I CCTNAGC 1 cut(s) 991
BpuEI CTTGAG 1 cut(s) 1196
BpuMI CCSGG 1 cut(s) 400
BsaI GGTCTC 2 cut(s) 580, 712
BsaJI CCNNGG 3 cut(s) 781, 1380, 1506
Bsc4I CCNNNNNNNGG 4 cut(s) 188, 343, 788, 1303
Bse1I ACTGG 3 cut(s) 290, 759, 793
BseBI CCWGG 3 cut(s) 783, 815, 1508
BseDI CCNNGG 3 cut(s) 781, 1380, 1506
BseGI GGATG 2 cut(s) 1261, 1312
BseLI CCNNNNNNNGG 4 cut(s) 188, 343, 788, 1303
BseMII CTCAG 2 cut(s) 1005, 1011
BseNI ACTGG 3 cut(s) 290, 759, 793
BseXI GCAGC 3 cut(s) 80, 820, 1434
BshFI GGCC 2 cut(s) 1378, 1411
BshNI GGYRCC 3 cut(s) 913, 1081, 1231
BsiHKAI GWGCWC 2 cut(s) 273, 1137
BsiSI CCGG 1 cut(s) 399
BslFI GGGAC 1 cut(s) 205
BslI CCNNNNNNNGG 4 cut(s) 188, 343, 788, 1303
BsmAI GTCTC 6 cut(s) 171, 208, 580, 712, 1186, 1270
BsmBI CGTCTC 1 cut(s) 1270
BsmFI GGGAC 1 cut(s) 205
BsnI GGCC 2 cut(s) 1378, 1411
Bso31I GGTCTC 2 cut(s) 580, 712
Bsp1286I GDGCHC 2 cut(s) 273, 1137
Bsp143I GATC 6 cut(s) 178, 721, 1036, 1099, 1428, 1441
Bsp19I CCATGG 1 cut(s) 1380
BspACI CCGC 2 cut(s) 1288, 1462
BspANI GGCC 2 cut(s) 1378, 1411
BspCNI CTCAG 2 cut(s) 1004, 1010
BspLI GGNNCC 3 cut(s) 915, 1083, 1233
BspMAI CTGCAG 1 cut(s) 1452
BspMI ACCTGC 2 cut(s) 234, 388
BspOI GCTAGC 1 cut(s) 866
BspPI GGATC 2 cut(s) 173, 1094
BspT107I GGYRCC 3 cut(s) 913, 1081, 1231
BspTNI GGTCTC 2 cut(s) 580, 712
BsrBI CCGCTC 2 cut(s) 1290, 1462
BsrI ACTGG 3 cut(s) 290, 759, 793
BssECI CCNNGG 3 cut(s) 781, 1380, 1506
BssMI GATC 6 cut(s) 178, 721, 1036, 1099, 1428, 1441
BssT1I CCWWGG 1 cut(s) 1380
Bst2UI CCWGG 3 cut(s) 783, 815, 1508
Bst4CI ACNGT 3 cut(s) 481, 1158, 1273
Bst6I CTCTTC 2 cut(s) 105, 135
BstAPI GCANNNNNTGC 2 cut(s) 380, 1330
BstC8I GCNNGC 1 cut(s) 864
BstDEI CTNAG 5 cut(s) 493, 991, 997, 1119, 1164
BstDSI CCRYGG 1 cut(s) 1380
BstF5I GGATG 2 cut(s) 1261, 1312
BstKTI GATC 6 cut(s) 181, 724, 1039, 1102, 1431, 1444
BstMAI GTCTC 6 cut(s) 171, 208, 580, 712, 1186, 1270
BstMBI GATC 6 cut(s) 178, 721, 1036, 1099, 1428, 1441
BstMWI GCNNNNNNNGC 3 cut(s) 380, 462, 1330
BstNI CCWGG 3 cut(s) 783, 815, 1508
BstNSI RCATGY 4 cut(s) 288, 304, 778, 898
BstSCI CCNGG 4 cut(s) 398, 781, 813, 1506
BstSFI CTRYAG 3 cut(s) 480, 927, 1448
BstV1I GCAGC 3 cut(s) 80, 820, 1434
BsuI GTATCC 1 cut(s) 1031
BsuRI GGCC 2 cut(s) 1378, 1411
BtgI CCRYGG 1 cut(s) 1380
BtsCI GGATG 2 cut(s) 1261, 1312
BtsI GCAGTG 1 cut(s) 1197
BtsIMutI CAGTG 3 cut(s) 630, 1163, 1197
BveI ACCTGC 2 cut(s) 234, 388
Cac8I GCNNGC 1 cut(s) 864
Cfr13I GGNCC 3 cut(s) 554, 698, 1377
CseI GACGC 1 cut(s) 956
Csp6I GTAC 3 cut(s) 152, 1082, 1232
CspCI CAANNNNNGTGG 4 cut(s) 306, 341, 420, 455
CviAII CATG 8 cut(s) 207, 285, 301, 775, 895, 918, 1381, 1407
CviQI GTAC 3 cut(s) 152, 1082, 1232
DdeI CTNAG 5 cut(s) 493, 991, 997, 1119, 1164
DpnI GATC 6 cut(s) 180, 723, 1038, 1101, 1430, 1443
DpnII GATC 6 cut(s) 178, 721, 1036, 1099, 1428, 1441
EaeI YGGCCR 1 cut(s) 1409
Eam1104I CTCTTC 2 cut(s) 105, 135
EarI CTCTTC 2 cut(s) 105, 135
Ecl136II GAGCTC 2 cut(s) 271, 1135
Eco130I CCWWGG 1 cut(s) 1380
Eco24I GRGCYC 2 cut(s) 273, 1137
Eco31I GGTCTC 2 cut(s) 580, 712
Eco47I GGWCC 2 cut(s) 554, 698
Eco53kI GAGCTC 2 cut(s) 271, 1135
Eco57I CTGAAG 3 cut(s) 116, 1107, 1386
EcoICRI GAGCTC 2 cut(s) 271, 1135
EcoRII CCWGG 3 cut(s) 781, 813, 1506
EcoT14I CCWWGG 1 cut(s) 1380
EcoT38I GRGCYC 2 cut(s) 273, 1137
ErhI CCWWGG 1 cut(s) 1380
Esp3I CGTCTC 1 cut(s) 1270
FaeI CATG 8 cut(s) 210, 288, 304, 778, 898, 921, 1384, 1410
FaqI GGGAC 1 cut(s) 205
FatI CATG 8 cut(s) 206, 284, 300, 774, 894, 917, 1380, 1406
FbaI TGATCA 2 cut(s) 721, 1441
FblI GTMKAC 1 cut(s) 562
Fnu4HI GCNGC 3 cut(s) 69, 834, 1448
FokI GGATG 2 cut(s) 1248, 1319
FriOI GRGCYC 2 cut(s) 273, 1137
Fsp4HI GCNGC 3 cut(s) 69, 834, 1448
FspBI CTAG 7 cut(s) 80, 450, 522, 558, 596, 863, 1106
GluI GCNGC 3 cut(s) 69, 834, 1448
GsuI CTGGAG 1 cut(s) 1089
HaeIII GGCC 2 cut(s) 1378, 1411
HapII CCGG 1 cut(s) 399
HgaI GACGC 1 cut(s) 956
Hin1II CATG 8 cut(s) 210, 288, 304, 778, 898, 921, 1384, 1410
HincII GTYRAC 1 cut(s) 772
HindII GTYRAC 1 cut(s) 772
HinfI GANTC 3 cut(s) 1168, 1238, 1498
HpaII CCGG 1 cut(s) 399
HphI GGTGA 4 cut(s) 18, 340, 803, 1121
Hpy166II GTNNAC 5 cut(s) 331, 490, 563, 772, 1314
Hpy188I TCNGA 5 cut(s) 64, 1000, 1139, 1243, 1428
Hpy188III TCNNGA 6 cut(s) 182, 190, 349, 1068, 1130, 1349
Hpy8I GTNNAC 5 cut(s) 331, 490, 563, 772, 1314
HpyAV CCTTC 5 cut(s) 30, 904, 1222, 1499, 1512
HpyCH4III ACNGT 3 cut(s) 481, 1158, 1273
HpyCH4IV ACGT 1 cut(s) 15
HpyCH4V TGCA 9 cut(s) 4, 229, 383, 456, 686, 1153, 1268, 1333, 1450
HpyF10VI GCNNNNNNNGC 3 cut(s) 380, 462, 1330
HpyF3I CTNAG 5 cut(s) 493, 991, 997, 1119, 1164
HpySE526I ACGT 1 cut(s) 15
Hsp92II CATG 8 cut(s) 210, 288, 304, 778, 898, 921, 1384, 1410
KpnI GGTACC 2 cut(s) 1085, 1235
Ksp22I TGATCA 2 cut(s) 721, 1441
Kzo9I GATC 6 cut(s) 178, 721, 1036, 1099, 1428, 1441
LmnI GCTCC 3 cut(s) 1132, 1321, 1459
Lsp1109I GCAGC 3 cut(s) 80, 820, 1434
LweI GCATC 2 cut(s) 529, 943
MaeI CTAG 7 cut(s) 80, 450, 522, 558, 596, 863, 1106
MaeII ACGT 1 cut(s) 15
MaeIII GTNAC 4 cut(s) 361, 417, 844, 1192
MalI GATC 6 cut(s) 180, 723, 1038, 1101, 1430, 1443
MbiI CCGCTC 2 cut(s) 1290, 1462
MboI GATC 6 cut(s) 178, 721, 1036, 1099, 1428, 1441
MboII GAAGA 9 cut(s) 15, 92, 105, 122, 625, 1031, 1247, 1364, 1379
MhlI GDGCHC 2 cut(s) 273, 1137
MlsI TGGCCA 1 cut(s) 1411
MluCI AATT 8 cut(s) 426, 650, 1250, 1328, 1371, 1387, 1475, 1484
MluNI TGGCCA 1 cut(s) 1411
Mox20I TGGCCA 1 cut(s) 1411
MroXI GAANNNNTTC 2 cut(s) 1254, 1371
MscI TGGCCA 1 cut(s) 1411
MseI TTAA 1 cut(s) 1479
MslI CAYNNNNRTG 2 cut(s) 283, 951
Msp20I TGGCCA 1 cut(s) 1411
MspA1I CMGCKG 1 cut(s) 1447
MspI CCGG 1 cut(s) 399
MspR9I CCNGG 4 cut(s) 400, 783, 815, 1508
MvaI CCWGG 3 cut(s) 783, 815, 1508
MwoI GCNNNNNNNGC 3 cut(s) 380, 462, 1330
NciI CCSGG 1 cut(s) 400
NcoI CCATGG 1 cut(s) 1380
NdeII GATC 6 cut(s) 178, 721, 1036, 1099, 1428, 1441
NheI GCTAGC 1 cut(s) 862
NlaIII CATG 8 cut(s) 210, 288, 304, 778, 898, 921, 1384, 1410
NlaIV GGNNCC 3 cut(s) 915, 1083, 1233
NmuCI GTSAC 2 cut(s) 361, 1192
NspI RCATGY 4 cut(s) 288, 304, 778, 898
PciI ACATGT 1 cut(s) 300
PdmI GAANNNNTTC 2 cut(s) 1254, 1371
PfeI GAWTC 3 cut(s) 1168, 1238, 1498
PflFI GACNNNGTC 3 cut(s) 200, 367, 678
PflMI CCANNNNNTGG 1 cut(s) 1303
PkrI GCNGC 3 cut(s) 70, 835, 1449
PscI ACATGT 1 cut(s) 300
Psp124BI GAGCTC 2 cut(s) 273, 1137
Psp6I CCWGG 3 cut(s) 781, 813, 1506
PspGI CCWGG 3 cut(s) 781, 813, 1506
PspN4I GGNNCC 3 cut(s) 915, 1083, 1233
PspPI GGNCC 3 cut(s) 554, 698, 1377
PstI CTGCAG 1 cut(s) 1452
PsyI GACNNNGTC 3 cut(s) 200, 367, 678
PvuII CAGCTG 1 cut(s) 1447
RsaI GTAC 3 cut(s) 153, 1083, 1233
RsaNI GTAC 3 cut(s) 152, 1082, 1232
RseI CAYNNNNRTG 2 cut(s) 283, 951
SacI GAGCTC 2 cut(s) 273, 1137
SaqAI TTAA 1 cut(s) 1479
SatI GCNGC 3 cut(s) 69, 834, 1448
Sau3AI GATC 6 cut(s) 178, 721, 1036, 1099, 1428, 1441
Sau96I GGNCC 3 cut(s) 554, 698, 1377
ScrFI CCNGG 4 cut(s) 400, 783, 815, 1508
SduI GDGCHC 2 cut(s) 273, 1137
SfaNI GCATC 2 cut(s) 529, 943
SfcI CTRYAG 3 cut(s) 480, 927, 1448
SinI GGWCC 2 cut(s) 554, 698
SmiMI CAYNNNNRTG 2 cut(s) 283, 951
SmlI CTYRAG 1 cut(s) 1211
SmoI CTYRAG 1 cut(s) 1211
SpeI ACTAGT 1 cut(s) 595
Sse9I AATT 8 cut(s) 426, 650, 1250, 1328, 1371, 1387, 1475, 1484
SsiI CCGC 2 cut(s) 1288, 1462
SspI AATATT 1 cut(s) 436
SspMI CTAG 7 cut(s) 80, 450, 522, 558, 596, 863, 1106
SstI GAGCTC 2 cut(s) 273, 1137
StyD4I CCNGG 4 cut(s) 398, 781, 813, 1506
StyI CCWWGG 1 cut(s) 1380
TaaI ACNGT 3 cut(s) 481, 1158, 1273
TaiI ACGT 1 cut(s) 18
TasI AATT 8 cut(s) 426, 650, 1250, 1328, 1371, 1387, 1475, 1484
TatI WGTACW 1 cut(s) 151
TfiI GAWTC 3 cut(s) 1168, 1238, 1498
Tru1I TTAA 1 cut(s) 1479
Tru9I TTAA 1 cut(s) 1479
TscAI CASTG 3 cut(s) 637, 1163, 1197
TseFI GTSAC 2 cut(s) 361, 1192
TseI GCWGC 3 cut(s) 68, 833, 1447
Tsp45I GTSAC 2 cut(s) 361, 1192
TspDTI ATGAA 4 cut(s) 246, 617, 1263, 1488
TspGWI ACGGA 3 cut(s) 436, 1294, 1431
TspRI CASTG 3 cut(s) 637, 1163, 1197
Tth111I GACNNNGTC 3 cut(s) 200, 367, 678
Van91I CCANNNNNTGG 1 cut(s) 1303
VpaK11BI GGWCC 2 cut(s) 554, 698
XapI RAATTY 3 cut(s) 1250, 1371, 1475
XceI RCATGY 4 cut(s) 288, 304, 778, 898
XcmI CCANNNNNNNNNTGG 1 cut(s) 637
XmiI GTMKAC 1 cut(s) 562
XmnI GAANNNNTTC 2 cut(s) 1254, 1371
XspI CTAG 7 cut(s) 80, 450, 522, 558, 596, 863, 1106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.