Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0012373

Physical Location & Seq

Genomic Coordinates Forward (+)

4158104 .. 4165477

Gene Structure 7374 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG056100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1374 bp

ATGCAACTTCTTCACGTTCCTTCTTCACCATACCTCTCTTTTCAAACTCTAAAAACACATTCAGAAGCAGCAGGACTGGCTTTATATGAGAAGCCTCTTCTATCATCATCTTCTATATTTTGTTCTCTTCAGCAAGAAAGAGTTGAAAGGTCTAAATGGGTATCACGTAGAGGCTCTGTGTTAAGCTCCTTCACAACTAAAGCTGCTTCTTTGGAAGCTGGCGCTGCTGCAGTATCAGATGGGAAAGCTGAGAGTGATGTACTGAAAGCATTATCTCAAATCATTGATCCAGACTTCGGGACTGACATTGTCTCATGTGGATTTGTGAAAGACCTGCAAATCAATGAGGCTTTGGGAGAGGTTTCATTTCGGTTAGAGCTCACTACACCAGCATGTCCAGTAAAGGACATGTTTGAGCAAAAGGCAAATGAGGTGGTGAACGAGCTTTCTTGGGTCAAGAATGTCAATGTGACTATGTCAGCACAACCGGCAAAACCCCTTTATGCCGGGCAACTTCCAGCAGGGTTACGGACAATTTCAAATATTGTGGCAGTTTCTAGTTGCAAGGGAGGCGTGGGAAAATCAACTGTAGCAGTAAACTTAGCATATACTTTGGCTGGTATGGGTGCTAGAGTTGGTATATTTGATGCTGATGTCTATGGTCCTAGTCTACCAACGATGGTCTCCCCTGAAAACCGAATACTAGTAATGAACCCAGAGAAGAAAACCATTATTCCTATTGAATACTTGGGAGTGAAATTGGTGTCTTTTGGATTTGCCGGACAAGGTCGTGCAATAATGAGAGGTCCAATGGTCTCTGGGGTCATTGATCAGCTTCTAACTACAACAGAGTGGGGAGAACTGGATTATCTTGTTGTTGACATGCCCCCTGGAACTGGTGATATTCAGCTTACTTTGTGCCAGGTAGTTCCATTGACTGCTGCTGTTATTGTCACCACCCCTCAAAAGCTAGCGTTTATTGATGTTGCAAAAGGAGTTCGCATGTTTTCAAAGTTGAAGGTGCCATGTGTTGCTGTAGTTGAGAATATGAGCCATTTTGATGCTGATGGGAAGCGTCATTACCCATTTGGTAAAGGCTCAGGCTCAGAGGTTGTAAAGCAGTTTGGTATCCCAAATCTATTTGATCTTCCCATTAGACCAACTGATGAGTGGACAGGGGAGCAAAAATTGCAGTATAATGATGTTCCAGAAGATATTGAACCTGAAGAAATTCGGCCCATGGGAAATTATGCCGTGTCAATAACATGGCCAGACGGATTTAGTCAGATCGCACCCTATGATCAGCTGCAGACAATGGAGCGGTTAGTTGATGAATTTAATCAATTCCTTCCCCCGATTCCTTCCCAGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006790 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016043 GO:0016226 GO:0022607 GO:0031163 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048037 GO:0051186 GO:0051536 GO:0051540 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF971 FeS_assembly_P ParA

Protein Analysis

457

Amino Acids

49.65

Weight (kDa)

5.03

Isoelectric Point (pI)

39.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FeS_assembly_P	PF01883	85 - 157	7.2e-18	Iron-sulfur cluster assembly protein
ParA	PF10609	179 - 390	3.7e-77	NUBPL iron-transfer P-loop NTPase
AAA_31	PF13614	181 - 219	3.6e-08	AAA domain
MipZ	PF09140	182 - 328	2.6e-06	ATPase MipZ
CbiA	PF01656	183 - 328	1.1e-09	CobQ/CobB/MinD/ParA nucleotide binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24430
fragaria_vesca	FvH4_1g05310 FvH4_1g05310 FvH4_1g05310 FvH4_1g05310
malus_domestica	MD02G1056300.v1.1 MD15G1189200.v1.1
prunus_persica	Prupe.7G227600_v2.0.a1
pyrus_communis	pycom15g16970
rosa_chinensis	RchiOBHm_Chr2g0091011
rosa_laevigata	RLG00000016166
rosa_multiflora	Rmu_sc0003305.1_g000005
rosa_roxburghii	Rroxscaffold_2G00150690
rosa_rugosa	Rorug02G0011400
rosa_samantha	Rh2AG057800 Rh2BG056100 Rh2CG058400 Rh2DG057500
rosa_wichuraiana	Rw2G005150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	342
AccB1I	GGYRCC	1 cut(s)	1021
AccBSI	CCGCTC	1 cut(s)	1321
AccI	GTMKAC	1 cut(s)	670
AciI	CCGC	1 cut(s)	1321
AclWI	GGATC	1 cut(s)	281
AcoI	YGGCCR	1 cut(s)	1268
AcsI	RAATTY	2 cut(s)	1230, 1334
AcuI	CTGAAG	2 cut(s)	113, 1245
AfaI	GTAC	1 cut(s)	261
AfiI	CCNNNNNNNGG	2 cut(s)	296, 896
AflIII	ACRYGT	1 cut(s)	408
AgsI	TTSAA	7 cut(s)	44, 146, 540, 743, 1011, 1018, 1220
AhlI	ACTAGT	1 cut(s)	703
AjnI	CCWGG	3 cut(s)	889, 921, 1365
Alw21I	GWGCWC	1 cut(s)	381
Alw26I	GTCTC	3 cut(s)	316, 688, 820
AlwI	GGATC	1 cut(s)	281
AoxI	GGCC	2 cut(s)	1235, 1268
ApeKI	GCWGC	6 cut(s)	68, 203, 224, 227, 941, 1306
ApoI	RAATTY	2 cut(s)	1230, 1334
Asp700I	GAANNNNTTC	1 cut(s)	1230
AspLEI	GCGC	1 cut(s)	224
AspS9I	GGNCC	3 cut(s)	662, 806, 1236
AsuC2I	CCSGG	1 cut(s)	508
AsuHPI	GGTGA	4 cut(s)	18, 448, 911, 946
AsuNHI	GCTAGC	1 cut(s)	970
AvaII	GGWCC	2 cut(s)	662, 806
BalI	TGGCCA	1 cut(s)	1270
BanI	GGYRCC	1 cut(s)	1021
BanII	GRGCYC	1 cut(s)	381
BarI	GAAGNNNNNNTAC	2 cut(s)	1064, 1096
Bbv12I	GWGCWC	1 cut(s)	381
BbvI	GCAGC	6 cut(s)	80, 190, 211, 214, 928, 1293
BccI	CCATC	3 cut(s)	233, 673, 1061
BceAI	ACGGC	1 cut(s)	1238
BciT130I	CCWGG	3 cut(s)	891, 923, 1367
BciVI	GTATCC	1 cut(s)	1139
BclI	TGATCA	2 cut(s)	829, 1300
BcnI	CCSGG	1 cut(s)	508
BcoDI	GTCTC	3 cut(s)	316, 688, 820
BcuI	ACTAGT	1 cut(s)	703
BfaI	CTAG	5 cut(s)	558, 630, 666, 704, 971
BfmI	CTRYAG	4 cut(s)	228, 588, 1035, 1307
BfoI	RGCGCY	1 cut(s)	225
BfuAI	ACCTGC	1 cut(s)	342
BfuI	GTATCC	1 cut(s)	1139
BisI	GCNGC	6 cut(s)	69, 204, 225, 228, 942, 1307
BlsI	GCNGC	6 cut(s)	70, 205, 226, 229, 943, 1308
Bme1390I	CCNGG	4 cut(s)	508, 891, 923, 1367
Bme18I	GGWCC	2 cut(s)	662, 806
BmgT120I	GGNCC	3 cut(s)	662, 806, 1236
BmiI	GGNNCC	1 cut(s)	1023
BmrFI	CCNGG	4 cut(s)	508, 891, 923, 1367
BmsI	GCATC	2 cut(s)	637, 1051
BmtI	GCTAGC	1 cut(s)	974
Bpu10I	CCTNAGC	1 cut(s)	1099
BpuMI	CCSGG	1 cut(s)	508
BsaAI	YACGTR	1 cut(s)	167
BsaI	GGTCTC	2 cut(s)	688, 820
BsaJI	CCNNGG	3 cut(s)	889, 1239, 1365
Bsc4I	CCNNNNNNNGG	2 cut(s)	296, 896
Bse118I	RCCGGY	1 cut(s)	487
Bse1I	ACTGG	4 cut(s)	81, 398, 867, 901
BseBI	CCWGG	3 cut(s)	891, 923, 1367
BseDI	CCNNGG	3 cut(s)	889, 1239, 1365
BseLI	CCNNNNNNNGG	2 cut(s)	296, 896
BseMII	CTCAG	3 cut(s)	240, 1113, 1119
BseNI	ACTGG	4 cut(s)	81, 398, 867, 901
BseXI	GCAGC	6 cut(s)	80, 190, 211, 214, 928, 1293
BshFI	GGCC	2 cut(s)	1237, 1270
BshNI	GGYRCC	1 cut(s)	1021
BsiHKAI	GWGCWC	1 cut(s)	381
BsiSI	CCGG	3 cut(s)	488, 507, 780
BslFI	GGGAC	1 cut(s)	313
BslI	CCNNNNNNNGG	2 cut(s)	296, 896
BsmAI	GTCTC	3 cut(s)	316, 688, 820
BsmFI	GGGAC	1 cut(s)	313
BsnI	GGCC	2 cut(s)	1237, 1270
Bso31I	GGTCTC	2 cut(s)	688, 820
Bsp1286I	GDGCHC	1 cut(s)	381
Bsp143I	GATC	5 cut(s)	286, 829, 1144, 1287, 1300
Bsp19I	CCATGG	1 cut(s)	1239
BspACI	CCGC	1 cut(s)	1321
BspANI	GGCC	2 cut(s)	1237, 1270
BspCNI	CTCAG	3 cut(s)	241, 1112, 1118
BspLI	GGNNCC	1 cut(s)	1023
BspMAI	CTGCAG	2 cut(s)	232, 1311
BspMI	ACCTGC	1 cut(s)	342
BspOI	GCTAGC	1 cut(s)	974
BspPI	GGATC	1 cut(s)	281
BspT107I	GGYRCC	1 cut(s)	1021
BspTNI	GGTCTC	2 cut(s)	688, 820
BsrBI	CCGCTC	1 cut(s)	1321
BsrFI	RCCGGY	1 cut(s)	487
BsrI	ACTGG	4 cut(s)	81, 398, 867, 901
BssAI	RCCGGY	1 cut(s)	487
BssECI	CCNNGG	3 cut(s)	889, 1239, 1365
BssMI	GATC	5 cut(s)	286, 829, 1144, 1287, 1300
BssT1I	CCWWGG	1 cut(s)	1239
Bst2UI	CCWGG	3 cut(s)	891, 923, 1367
Bst4CI	ACNGT	1 cut(s)	589
Bst6I	CTCTTC	2 cut(s)	102, 132
BstAPI	GCANNNNNTGC	1 cut(s)	1189
BstBAI	YACGTR	1 cut(s)	167
BstC8I	GCNNGC	2 cut(s)	220, 972
BstDEI	CTNAG	4 cut(s)	249, 601, 1099, 1105
BstDSI	CCRYGG	1 cut(s)	1239
BstH2I	RGCGCY	1 cut(s)	225
BstHHI	GCGC	1 cut(s)	224
BstKTI	GATC	5 cut(s)	289, 832, 1147, 1290, 1303
BstMAI	GTCTC	3 cut(s)	316, 688, 820
BstMBI	GATC	5 cut(s)	286, 829, 1144, 1287, 1300
BstMWI	GCNNNNNNNGC	5 cut(s)	77, 224, 488, 570, 1189
BstNI	CCWGG	3 cut(s)	891, 923, 1367
BstNSI	RCATGY	4 cut(s)	396, 412, 886, 1006
BstSCI	CCNGG	4 cut(s)	506, 889, 921, 1365
BstSFI	CTRYAG	4 cut(s)	228, 588, 1035, 1307
BstV1I	GCAGC	6 cut(s)	80, 190, 211, 214, 928, 1293
BsuI	GTATCC	1 cut(s)	1139
BsuRI	GGCC	2 cut(s)	1237, 1270
BtgI	CCRYGG	1 cut(s)	1239
BveI	ACCTGC	1 cut(s)	342
Cac8I	GCNNGC	2 cut(s)	220, 972
CfoI	GCGC	1 cut(s)	224
Cfr10I	RCCGGY	1 cut(s)	487
Cfr13I	GGNCC	3 cut(s)	662, 806, 1236
CseI	GACGC	1 cut(s)	1064
Csp6I	GTAC	1 cut(s)	260
CspCI	CAANNNNNGTGG	4 cut(s)	414, 449, 528, 563
CviAII	CATG	8 cut(s)	315, 393, 409, 883, 1003, 1026, 1240, 1266
CviQI	GTAC	1 cut(s)	260
DdeI	CTNAG	4 cut(s)	249, 601, 1099, 1105
DpnI	GATC	5 cut(s)	288, 831, 1146, 1289, 1302
DpnII	GATC	5 cut(s)	286, 829, 1144, 1287, 1300
EaeI	YGGCCR	1 cut(s)	1268
Eam1104I	CTCTTC	2 cut(s)	102, 132
EarI	CTCTTC	2 cut(s)	102, 132
Ecl136II	GAGCTC	1 cut(s)	379
Eco130I	CCWWGG	1 cut(s)	1239
Eco24I	GRGCYC	1 cut(s)	381
Eco31I	GGTCTC	2 cut(s)	688, 820
Eco47I	GGWCC	2 cut(s)	662, 806
Eco53kI	GAGCTC	1 cut(s)	379
Eco57I	CTGAAG	2 cut(s)	113, 1245
EcoICRI	GAGCTC	1 cut(s)	379
EcoRII	CCWGG	3 cut(s)	889, 921, 1365
EcoT14I	CCWWGG	1 cut(s)	1239
EcoT38I	GRGCYC	1 cut(s)	381
ErhI	CCWWGG	1 cut(s)	1239
FaeI	CATG	8 cut(s)	318, 396, 412, 886, 1006, 1029, 1243, 1269
FaqI	GGGAC	1 cut(s)	313
FatI	CATG	8 cut(s)	314, 392, 408, 882, 1002, 1025, 1239, 1265
FbaI	TGATCA	2 cut(s)	829, 1300
FblI	GTMKAC	1 cut(s)	670
Fnu4HI	GCNGC	6 cut(s)	69, 204, 225, 228, 942, 1307
FriOI	GRGCYC	1 cut(s)	381
Fsp4HI	GCNGC	6 cut(s)	69, 204, 225, 228, 942, 1307
FspBI	CTAG	5 cut(s)	558, 630, 666, 704, 971
GlaI	GCGC	1 cut(s)	223
GluI	GCNGC	6 cut(s)	69, 204, 225, 228, 942, 1307
HaeII	RGCGCY	1 cut(s)	225
HaeIII	GGCC	2 cut(s)	1237, 1270
HapII	CCGG	3 cut(s)	488, 507, 780
HgaI	GACGC	1 cut(s)	1064
HhaI	GCGC	1 cut(s)	224
Hin1II	CATG	8 cut(s)	318, 396, 412, 886, 1006, 1029, 1243, 1269
Hin6I	GCGC	1 cut(s)	222
HinP1I	GCGC	1 cut(s)	222
HincII	GTYRAC	1 cut(s)	880
HindII	GTYRAC	1 cut(s)	880
HinfI	GANTC	1 cut(s)	1357
HpaII	CCGG	3 cut(s)	488, 507, 780
HphI	GGTGA	4 cut(s)	18, 448, 911, 946
Hpy166II	GTNNAC	5 cut(s)	439, 598, 671, 880, 1173
Hpy188I	TCNGA	4 cut(s)	64, 238, 1108, 1287
Hpy188III	TCNNGA	4 cut(s)	290, 298, 457, 1208
Hpy8I	GTNNAC	5 cut(s)	439, 598, 671, 880, 1173
HpyAV	CCTTC	5 cut(s)	30, 199, 1012, 1358, 1371
HpyCH4III	ACNGT	1 cut(s)	589
HpyCH4IV	ACGT	2 cut(s)	15, 166
HpyCH4V	TGCA	8 cut(s)	4, 230, 337, 564, 794, 989, 1192, 1309
HpyF10VI	GCNNNNNNNGC	5 cut(s)	77, 224, 488, 570, 1189
HpyF3I	CTNAG	4 cut(s)	249, 601, 1099, 1105
HpySE526I	ACGT	2 cut(s)	15, 166
Hsp92II	CATG	8 cut(s)	318, 396, 412, 886, 1006, 1029, 1243, 1269
HspAI	GCGC	1 cut(s)	222
Ksp22I	TGATCA	2 cut(s)	829, 1300
Kzo9I	GATC	5 cut(s)	286, 829, 1144, 1287, 1300
LmnI	GCTCC	3 cut(s)	191, 1180, 1318
Lsp1109I	GCAGC	6 cut(s)	80, 190, 211, 214, 928, 1293
LweI	GCATC	2 cut(s)	637, 1051
MaeI	CTAG	5 cut(s)	558, 630, 666, 704, 971
MaeII	ACGT	2 cut(s)	15, 166
MaeIII	GTNAC	3 cut(s)	469, 525, 952
MalI	GATC	5 cut(s)	288, 831, 1146, 1289, 1302
MbiI	CCGCTC	1 cut(s)	1321
MboI	GATC	5 cut(s)	286, 829, 1144, 1287, 1300
MboII	GAAGA	8 cut(s)	15, 89, 102, 119, 733, 1139, 1223, 1238
MhlI	GDGCHC	1 cut(s)	381
MlsI	TGGCCA	1 cut(s)	1270
MluCI	AATT	7 cut(s)	534, 758, 1187, 1230, 1246, 1334, 1343
MluNI	TGGCCA	1 cut(s)	1270
Mox20I	TGGCCA	1 cut(s)	1270
MroXI	GAANNNNTTC	1 cut(s)	1230
MscI	TGGCCA	1 cut(s)	1270
MseI	TTAA	2 cut(s)	182, 1338
MslI	CAYNNNNRTG	2 cut(s)	391, 1059
Msp20I	TGGCCA	1 cut(s)	1270
MspA1I	CMGCKG	1 cut(s)	1306
MspI	CCGG	3 cut(s)	488, 507, 780
MspR9I	CCNGG	4 cut(s)	508, 891, 923, 1367
MvaI	CCWGG	3 cut(s)	891, 923, 1367
MwoI	GCNNNNNNNGC	5 cut(s)	77, 224, 488, 570, 1189
NciI	CCSGG	1 cut(s)	508
NcoI	CCATGG	1 cut(s)	1239
NdeII	GATC	5 cut(s)	286, 829, 1144, 1287, 1300
NheI	GCTAGC	1 cut(s)	970
NlaIII	CATG	8 cut(s)	318, 396, 412, 886, 1006, 1029, 1243, 1269
NlaIV	GGNNCC	1 cut(s)	1023
NmuCI	GTSAC	2 cut(s)	469, 952
NspI	RCATGY	4 cut(s)	396, 412, 886, 1006
PciI	ACATGT	1 cut(s)	408
PdmI	GAANNNNTTC	1 cut(s)	1230
PfeI	GAWTC	1 cut(s)	1357
PflFI	GACNNNGTC	3 cut(s)	308, 475, 786
PkrI	GCNGC	6 cut(s)	70, 205, 226, 229, 943, 1308
Ppu21I	YACGTR	1 cut(s)	167
PscI	ACATGT	1 cut(s)	408
Psp124BI	GAGCTC	1 cut(s)	381
Psp6I	CCWGG	3 cut(s)	889, 921, 1365
PspGI	CCWGG	3 cut(s)	889, 921, 1365
PspN4I	GGNNCC	1 cut(s)	1023
PspPI	GGNCC	3 cut(s)	662, 806, 1236
PstI	CTGCAG	2 cut(s)	232, 1311
PsyI	GACNNNGTC	3 cut(s)	308, 475, 786
PvuII	CAGCTG	1 cut(s)	1306
RsaI	GTAC	1 cut(s)	261
RsaNI	GTAC	1 cut(s)	260
RseI	CAYNNNNRTG	2 cut(s)	391, 1059
SacI	GAGCTC	1 cut(s)	381
SaqAI	TTAA	2 cut(s)	182, 1338
SatI	GCNGC	6 cut(s)	69, 204, 225, 228, 942, 1307
Sau3AI	GATC	5 cut(s)	286, 829, 1144, 1287, 1300
Sau96I	GGNCC	3 cut(s)	662, 806, 1236
ScrFI	CCNGG	4 cut(s)	508, 891, 923, 1367
SduI	GDGCHC	1 cut(s)	381
SfaNI	GCATC	2 cut(s)	637, 1051
SfcI	CTRYAG	4 cut(s)	228, 588, 1035, 1307
SinI	GGWCC	2 cut(s)	662, 806
SmiMI	CAYNNNNRTG	2 cut(s)	391, 1059
SpeI	ACTAGT	1 cut(s)	703
Sse9I	AATT	7 cut(s)	534, 758, 1187, 1230, 1246, 1334, 1343
SsiI	CCGC	1 cut(s)	1321
SspI	AATATT	1 cut(s)	544
SspMI	CTAG	5 cut(s)	558, 630, 666, 704, 971
SstI	GAGCTC	1 cut(s)	381
StyD4I	CCNGG	4 cut(s)	506, 889, 921, 1365
StyI	CCWWGG	1 cut(s)	1239
TaaI	ACNGT	1 cut(s)	589
TaiI	ACGT	2 cut(s)	18, 169
TasI	AATT	7 cut(s)	534, 758, 1187, 1230, 1246, 1334, 1343
TatI	WGTACW	1 cut(s)	259
TfiI	GAWTC	1 cut(s)	1357
Tru1I	TTAA	2 cut(s)	182, 1338
Tru9I	TTAA	2 cut(s)	182, 1338
TseFI	GTSAC	2 cut(s)	469, 952
TseI	GCWGC	6 cut(s)	68, 203, 224, 227, 941, 1306
Tsp45I	GTSAC	2 cut(s)	469, 952
TspDTI	ATGAA	3 cut(s)	354, 725, 1347
TspGWI	ACGGA	2 cut(s)	544, 1290
Tth111I	GACNNNGTC	3 cut(s)	308, 475, 786
VpaK11BI	GGWCC	2 cut(s)	662, 806
XapI	RAATTY	2 cut(s)	1230, 1334
XceI	RCATGY	4 cut(s)	396, 412, 886, 1006
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1167
XmiI	GTMKAC	1 cut(s)	670
XmnI	GAANNNNTTC	1 cut(s)	1230
XspI	CTAG	5 cut(s)	558, 630, 666, 704, 971

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.