MD02G1103300.v1.1

In Between Ring fingers

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0019767
Physical Location & Seq
Forward (+)
8270511 .. 8271428
918 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1103300.v1.1.491

Sequence Viewer

Length: 318 bp
ATGGCCCTTACGGCGCCTCGGAAGAAAAACTTGTACCGTCCCTTCAATGTGTGCTCGGAACTGGTGATTCATGAGTATCCGGAGGGTACCACTCGGTCTGAACTGGGAAAGAAGGGTGAAGACAAGATGCTGGAAGAGCTTGCCAAGAAGAAGAGGTGGAGGAGGTGTCCAAATTGCAATTACTCTGTTGAAAGAATATCTGGGTGCAGCTACATCAAATGCAGGTGTCCATATAGTTTCTGTTACAAATGTGGAGTGCAAAGTTCAGGTTACTGTACTCGTTTCAACCAACGTAGGATGACTGAGCTCGAAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IBR

Protein Analysis

106

Amino Acids

12.38

Weight (kDa)

9.39

Isoelectric Point (pI)

61.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
IBR PF01485 40 - 90 2.2e-07 IBR domain, a half RING-finger domain
Rcat_RNF216 PF26200 44 - 90 3.3e-06 RNF216 Rcat domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019767)

Species Orthologous Gene IDs
malus_domestica MD02G1103300.v1.1
rosa_laevigata RLG00000016623
rosa_multiflora Rmu_sc0005612.1_g000005
rosa_rugosa Rorug02G0056600 Rorug02G0056800
rosa_samantha Rh2BG105800 Rh2DG106400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 213
Acc36I ACCTGC 1 cut(s) 213
Acc65I GGTACC 1 cut(s) 86
AccB1I GGYRCC 2 cut(s) 13, 86
AccIII TCCGGA 1 cut(s) 79
AcyI GRCGYC 1 cut(s) 14
AfaI GTAC 3 cut(s) 35, 88, 277
AgsI TTSAA 3 cut(s) 46, 191, 286
AluBI AGCT 3 cut(s) 139, 210, 307
AluI AGCT 3 cut(s) 139, 210, 307
Alw21I GWGCWC 2 cut(s) 56, 309
Aor13HI TCCGGA 1 cut(s) 79
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 207
Asp718I GGTACC 1 cut(s) 86
AspLEI GCGC 1 cut(s) 16
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 2 cut(s) 76, 128
BanI GGYRCC 2 cut(s) 13, 86
BanII GRGCYC 1 cut(s) 309
BarI GAAGNNNNNNTAC 2 cut(s) 26, 58
BbsI GAAGAC 1 cut(s) 126
Bbv12I GWGCWC 2 cut(s) 56, 309
BbvI GCAGC 1 cut(s) 219
BceAI ACGGC 1 cut(s) 27
BciVI GTATCC 1 cut(s) 87
BfoI RGCGCY 1 cut(s) 17
BfuAI ACCTGC 1 cut(s) 213
BfuI GTATCC 1 cut(s) 87
BglI GCCNNNNNGGC 1 cut(s) 11
BisI GCNGC 1 cut(s) 208
BlsI GCNGC 1 cut(s) 209
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 2 cut(s) 15, 88
BmrI ACTGGG 1 cut(s) 113
BmsI GCATC 1 cut(s) 117
BmuI ACTGGG 1 cut(s) 113
BpiI GAAGAC 1 cut(s) 126
BsaHI GRCGYC 1 cut(s) 14
BsaJI CCNNGG 1 cut(s) 17
BsaWI WCCGGW 1 cut(s) 79
BsaXI ACNNNNNCTCC 2 cut(s) 151, 181
Bse1I ACTGG 2 cut(s) 66, 108
BseAI TCCGGA 1 cut(s) 79
BseDI CCNNGG 1 cut(s) 17
BseGI GGATG 1 cut(s) 303
BseMII CTCAG 1 cut(s) 294
BseNI ACTGG 2 cut(s) 66, 108
BseRI GAGGAG 1 cut(s) 175
BseXI GCAGC 1 cut(s) 219
BsgI GTGCAG 1 cut(s) 226
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 2 cut(s) 13, 86
BsiHKAI GWGCWC 2 cut(s) 56, 309
BsiSI CCGG 1 cut(s) 80
BslFI GGGAC 1 cut(s) 24
BsmFI GGGAC 1 cut(s) 24
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 2 cut(s) 56, 309
Bsp13I TCCGGA 1 cut(s) 79
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 295
BspEI TCCGGA 1 cut(s) 79
BspHI TCATGA 1 cut(s) 70
BspLI GGNNCC 2 cut(s) 15, 88
BspMI ACCTGC 1 cut(s) 213
BspQI GCTCTTC 1 cut(s) 129
BspT107I GGYRCC 2 cut(s) 13, 86
BsrI ACTGG 2 cut(s) 66, 108
BssECI CCNNGG 1 cut(s) 17
BssNI GRCGYC 1 cut(s) 14
Bst4CI ACNGT 2 cut(s) 38, 275
Bst6I CTCTTC 2 cut(s) 129, 146
BstACI GRCGYC 1 cut(s) 14
BstC8I GCNNGC 1 cut(s) 141
BstDEI CTNAG 1 cut(s) 303
BstF5I GGATG 1 cut(s) 303
BstH2I RGCGCY 1 cut(s) 17
BstHHI GCGC 1 cut(s) 16
BstMWI GCNNNNNNNGC 2 cut(s) 11, 136
BstV1I GCAGC 1 cut(s) 219
BstV2I GAAGAC 1 cut(s) 126
BsuI GTATCC 1 cut(s) 87
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 1 cut(s) 303
BveI ACCTGC 1 cut(s) 213
Cac8I GCNNGC 1 cut(s) 141
CciI TCATGA 1 cut(s) 70
CfoI GCGC 1 cut(s) 16
Cfr13I GGNCC 1 cut(s) 4
Csp6I GTAC 3 cut(s) 34, 87, 276
CviAII CATG 1 cut(s) 71
CviJI RGCY 4 cut(s) 5, 139, 210, 307
CviKI_1 RGCY 4 cut(s) 5, 139, 210, 307
CviQI GTAC 3 cut(s) 34, 87, 276
DdeI CTNAG 1 cut(s) 303
DinI GGCGCC 1 cut(s) 15
Eam1104I CTCTTC 2 cut(s) 129, 146
EarI CTCTTC 2 cut(s) 129, 146
Ecl136II GAGCTC 1 cut(s) 307
Eco24I GRGCYC 1 cut(s) 309
Eco53kI GAGCTC 1 cut(s) 307
EcoICRI GAGCTC 1 cut(s) 307
EcoT38I GRGCYC 1 cut(s) 309
EgeI GGCGCC 1 cut(s) 15
EheI GGCGCC 1 cut(s) 15
FaeI CATG 1 cut(s) 74
FaiI YATR 3 cut(s) 72, 232, 234
FalI AAGNNNNNCTT 2 cut(s) 14, 46
FaqI GGGAC 1 cut(s) 24
FatI CATG 1 cut(s) 70
Fnu4HI GCNGC 1 cut(s) 208
FokI GGATG 1 cut(s) 310
FriOI GRGCYC 1 cut(s) 309
Fsp4HI GCNGC 1 cut(s) 208
GlaI GCGC 1 cut(s) 15
GluI GCNGC 1 cut(s) 208
HaeII RGCGCY 1 cut(s) 17
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 80
HhaI GCGC 1 cut(s) 16
Hin1I GRCGYC 1 cut(s) 14
Hin1II CATG 1 cut(s) 74
Hin6I GCGC 1 cut(s) 14
HinP1I GCGC 1 cut(s) 14
HinfI GANTC 1 cut(s) 67
HpaII CCGG 1 cut(s) 80
HphI GGTGA 2 cut(s) 76, 128
Hpy188I TCNGA 3 cut(s) 21, 58, 100
Hpy188III TCNNGA 2 cut(s) 71, 80
HpyAV CCTTC 2 cut(s) 52, 106
HpyCH4III ACNGT 2 cut(s) 38, 275
HpyCH4IV ACGT 1 cut(s) 292
HpyCH4V TGCA 4 cut(s) 177, 207, 222, 259
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 136
HpyF3I CTNAG 1 cut(s) 303
HpySE526I ACGT 1 cut(s) 292
Hsp92I GRCGYC 1 cut(s) 14
Hsp92II CATG 1 cut(s) 74
HspAI GCGC 1 cut(s) 14
KasI GGCGCC 1 cut(s) 13
Kpn2I TCCGGA 1 cut(s) 79
KpnI GGTACC 1 cut(s) 90
LguI GCTCTTC 1 cut(s) 129
LpnPI CCDG 7 cut(s) 47, 89, 93, 116, 186, 208, 252
Lsp1109I GCAGC 1 cut(s) 219
LweI GCATC 1 cut(s) 117
MaeII ACGT 1 cut(s) 292
MaeIII GTNAC 2 cut(s) 242, 269
MboII GAAGA 5 cut(s) 34, 131, 146, 160, 163
MhlI GDGCHC 2 cut(s) 56, 309
MluCI AATT 2 cut(s) 172, 178
Mly113I GGCGCC 1 cut(s) 14
MnlI CCTC 5 cut(s) 27, 76, 147, 153, 156
MroI TCCGGA 1 cut(s) 79
MspI CCGG 1 cut(s) 80
MwoI GCNNNNNNNGC 2 cut(s) 11, 136
NarI GGCGCC 1 cut(s) 14
NlaIII CATG 1 cut(s) 74
NlaIV GGNNCC 2 cut(s) 15, 88
PagI TCATGA 1 cut(s) 70
PaqCI CACCTGC 1 cut(s) 213
PciSI GCTCTTC 1 cut(s) 129
PfeI GAWTC 1 cut(s) 67
PkrI GCNGC 1 cut(s) 209
PluTI GGCGCC 1 cut(s) 17
Psp124BI GAGCTC 1 cut(s) 309
PspN4I GGNNCC 2 cut(s) 15, 88
PspPI GGNCC 1 cut(s) 4
RsaI GTAC 3 cut(s) 35, 88, 277
RsaNI GTAC 3 cut(s) 34, 87, 276
SacI GAGCTC 1 cut(s) 309
SapI GCTCTTC 1 cut(s) 129
SatI GCNGC 1 cut(s) 208
Sau96I GGNCC 1 cut(s) 4
SduI GDGCHC 2 cut(s) 56, 309
SetI ASST 8 cut(s) 141, 158, 167, 212, 227, 271, 295, 309
SfaNI GCATC 1 cut(s) 117
SfoI GGCGCC 1 cut(s) 15
Sse9I AATT 2 cut(s) 172, 178
SspDI GGCGCC 1 cut(s) 13
SstI GAGCTC 1 cut(s) 309
TaaI ACNGT 2 cut(s) 38, 275
TaiI ACGT 1 cut(s) 295
TaqI TCGA 1 cut(s) 309
TaqII GACCGA 1 cut(s) 84
TasI AATT 2 cut(s) 172, 178
TatI WGTACW 1 cut(s) 275
TfiI GAWTC 1 cut(s) 67
TseI GCWGC 1 cut(s) 207
TspDTI ATGAA 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.