E3 ubiquitin-protein ligase
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| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD02G1103300.v1.1 |
| rosa_laevigata | RLG00000016623 |
| rosa_multiflora | Rmu_sc0005612.1_g000005 |
| rosa_rugosa | Rorug02G0056600 Rorug02G0056800 |
| rosa_samantha | Rh2BG105800 Rh2DG106400 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 198 |
| Acc36I | ACCTGC | 1 cut(s) | 146 |
| AciI | CCGC | 1 cut(s) | 110 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 109 |
| AgsI | TTSAA | 2 cut(s) | 40, 234 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 235, 267 |
| Alw26I | GTCTC | 1 cut(s) | 93 |
| AsuHPI | GGTGA | 1 cut(s) | 215 |
| BbsI | GAAGAC | 1 cut(s) | 216 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 158, 192 |
| BcoDI | GTCTC | 1 cut(s) | 93 |
| BfuAI | ACCTGC | 1 cut(s) | 146 |
| BmiI | GGNNCC | 1 cut(s) | 138 |
| BmsI | GCATC | 2 cut(s) | 16, 64 |
| BpiI | GAAGAC | 1 cut(s) | 216 |
| Bsa29I | ATCGAT | 1 cut(s) | 168 |
| BsaI | GGTCTC | 1 cut(s) | 93 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 109 |
| BseCI | ATCGAT | 1 cut(s) | 168 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 109 |
| BshVI | ATCGAT | 1 cut(s) | 168 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 109 |
| BsmAI | GTCTC | 1 cut(s) | 93 |
| Bso31I | GGTCTC | 1 cut(s) | 93 |
| Bsp143I | GATC | 3 cut(s) | 6, 78, 169 |
| BspACI | CCGC | 1 cut(s) | 110 |
| BspDI | ATCGAT | 1 cut(s) | 168 |
| BspLI | GGNNCC | 1 cut(s) | 138 |
| BspMI | ACCTGC | 1 cut(s) | 146 |
| BspTNI | GGTCTC | 1 cut(s) | 93 |
| BssMI | GATC | 3 cut(s) | 6, 78, 169 |
| Bst6I | CTCTTC | 1 cut(s) | 129 |
| BstDEI | CTNAG | 2 cut(s) | 215, 226 |
| BstKTI | GATC | 3 cut(s) | 9, 81, 172 |
| BstMAI | GTCTC | 1 cut(s) | 93 |
| BstMBI | GATC | 3 cut(s) | 6, 78, 169 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 116 |
| BstV2I | GAAGAC | 1 cut(s) | 216 |
| Bsu15I | ATCGAT | 1 cut(s) | 168 |
| BsuTUI | ATCGAT | 1 cut(s) | 168 |
| BveI | ACCTGC | 1 cut(s) | 146 |
| ClaI | ATCGAT | 1 cut(s) | 168 |
| CviAII | CATG | 1 cut(s) | 115 |
| CviJI | RGCY | 2 cut(s) | 119, 137 |
| CviKI_1 | RGCY | 2 cut(s) | 119, 137 |
| DdeI | CTNAG | 2 cut(s) | 215, 226 |
| DpnI | GATC | 3 cut(s) | 8, 80, 171 |
| DpnII | GATC | 3 cut(s) | 6, 78, 169 |
| Eam1104I | CTCTTC | 1 cut(s) | 129 |
| EarI | CTCTTC | 1 cut(s) | 129 |
| Eco31I | GGTCTC | 1 cut(s) | 93 |
| FaeI | CATG | 1 cut(s) | 118 |
| FaiI | YATR | 4 cut(s) | 21, 54, 116, 198 |
| FatI | CATG | 1 cut(s) | 114 |
| Hin1II | CATG | 1 cut(s) | 118 |
| HphI | GGTGA | 1 cut(s) | 215 |
| Hpy166II | GTNNAC | 1 cut(s) | 13 |
| Hpy188I | TCNGA | 2 cut(s) | 73, 256 |
| Hpy188III | TCNNGA | 1 cut(s) | 10 |
| Hpy8I | GTNNAC | 1 cut(s) | 13 |
| HpyAV | CCTTC | 1 cut(s) | 40 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 116 |
| HpyF3I | CTNAG | 2 cut(s) | 215, 226 |
| Hsp92II | CATG | 1 cut(s) | 118 |
| Kzo9I | GATC | 3 cut(s) | 6, 78, 169 |
| LmnI | GCTCC | 1 cut(s) | 142 |
| LpnPI | CCDG | 2 cut(s) | 141, 154 |
| LweI | GCATC | 2 cut(s) | 16, 64 |
| MaeIII | GTNAC | 1 cut(s) | 158 |
| MalI | GATC | 3 cut(s) | 8, 80, 171 |
| MboI | GATC | 3 cut(s) | 6, 78, 169 |
| MboII | GAAGA | 3 cut(s) | 116, 221, 275 |
| MmeI | TCCRAC | 1 cut(s) | 266 |
| MnlI | CCTC | 4 cut(s) | 113, 197, 212, 249 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 116 |
| NdeII | GATC | 3 cut(s) | 6, 78, 169 |
| NlaIII | CATG | 1 cut(s) | 118 |
| NlaIV | GGNNCC | 1 cut(s) | 138 |
| PsiI | TTATAA | 1 cut(s) | 198 |
| PspN4I | GGNNCC | 1 cut(s) | 138 |
| Sau3AI | GATC | 3 cut(s) | 6, 78, 169 |
| SetI | ASST | 4 cut(s) | 105, 160, 216, 232 |
| SfaNI | GCATC | 2 cut(s) | 16, 64 |
| SgeI | CNNG | 6 cut(s) | 22, 79, 110, 127, 153, 168 |
| SsiI | CCGC | 1 cut(s) | 110 |
| TaqI | TCGA | 1 cut(s) | 168 |
| TspDTI | ATGAA | 2 cut(s) | 108, 222 |