Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0019767

Physical Location & Seq

Genomic Coordinates Reverse (-)

4376958 .. 4379940

Gene Structure 2983 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0056600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGAATGCTTCAAAGTTCATTAAATGTGTTACTGTTGGGGATGGAGCTGTAGGGAAGACCTGCATGCTAATTTGCTACACCAGCAACAAGTTTCCTACTGATTATATACCCACAGTGTTTGACAATTTTAGTGCAAATGTGGCTGTGGATGGAAATATTGTCAATTTGGGGCTATGGGACACTGCAGGTCAGGAGGACTACAGCAGGTTGAGGCCACTAAGTTACAGAGGTGCAGATATATTTGTGTTGGCTTTCTCTCTAATTAGTAGAGCAAGCTATGAGAATGTTCTTAAGAAGTGGATGCCAGAACTTCGCCGATTTGCGCCTAATGTTCCAATTGTCCTTGTTGGGACAAAGCTTGATCTTCGTGAGGACATGCGCTATCTAGCTGATCATATGGGATCGAACATCATAACTTCTGCTCAGGGAGAGGAGTTGAGAAAGCAAATAGGAGCCGCAGCTTATATTGAATGCAGCTCTAAGACCCAACAGAATGTCAAAGCGGTGTTTGACACTGCCATCAAGGCTGTTCTTCAACCTCCAAGAAGGAAGGATATGGTTAAGCAGAAAAGGCACCGAAGGTCTGGTTGCTCAATTGTGAGCATTGTCTGTGGAGGATGTGACGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044444 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-C3HC4

Protein Analysis

209

Amino Acids

23.15

Weight (kDa)

9.18

Isoelectric Point (pI)

47.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ras	PF00071	8 - 178	1.1e-50	Ras family
Roc	PF08477	8 - 121	5.9e-23	Ras of Complex, Roc, domain of DAPkinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019767)

Species	Orthologous Gene IDs
malus_domestica	MD02G1103300.v1.1
rosa_laevigata	RLG00000016623
rosa_multiflora	Rmu_sc0005612.1_g000005
rosa_rugosa	Rorug02G0056600 Rorug02G0056800
rosa_samantha	Rh2BG105800 Rh2DG106400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	68, 176, 195
AccB1I	GGYRCC	1 cut(s)	573
AciI	CCGC	2 cut(s)	456, 503
AclWI	GGATC	1 cut(s)	409
AflII	CTTAAG	1 cut(s)	290
AgsI	TTSAA	3 cut(s)	12, 470, 536
AluBI	AGCT	6 cut(s)	47, 276, 358, 389, 461, 477
AluI	AGCT	6 cut(s)	47, 276, 358, 389, 461, 477
AlwI	GGATC	1 cut(s)	409
AoxI	GGCC	1 cut(s)	212
ApeKI	GCWGC	2 cut(s)	458, 474
AspLEI	GCGC	2 cut(s)	325, 381
BanI	GGYRCC	1 cut(s)	573
BbsI	GAAGAC	1 cut(s)	62
BbvI	GCAGC	2 cut(s)	470, 486
BccI	CCATC	3 cut(s)	35, 143, 527
BclI	TGATCA	1 cut(s)	391
BfaI	CTAG	1 cut(s)	386
BfmI	CTRYAG	3 cut(s)	48, 183, 199
BfrI	CTTAAG	1 cut(s)	290
BfuAI	ACCTGC	3 cut(s)	68, 176, 195
BglI	GCCNNNNNGGC	1 cut(s)	524
BisI	GCNGC	3 cut(s)	456, 459, 475
BlsI	GCNGC	3 cut(s)	457, 460, 476
BmiI	GGNNCC	2 cut(s)	454, 575
BmsI	GCATC	1 cut(s)	291
BpiI	GAAGAC	1 cut(s)	62
Bpu10I	CCTNAGC	1 cut(s)	423
BseGI	GGATG	4 cut(s)	46, 154, 306, 623
BseMII	CTCAG	1 cut(s)	437
BseRI	GAGGAG	1 cut(s)	446
BseXI	GCAGC	2 cut(s)	470, 486
BsgI	GTGCAG	1 cut(s)	252
BshFI	GGCC	1 cut(s)	214
BshNI	GGYRCC	1 cut(s)	573
BslFI	GGGAC	2 cut(s)	191, 364
BsmFI	GGGAC	2 cut(s)	191, 364
BsmI	GAATGC	2 cut(s)	10, 476
BsnI	GGCC	1 cut(s)	214
Bsp143I	GATC	3 cut(s)	361, 391, 401
BspACI	CCGC	2 cut(s)	456, 503
BspANI	GGCC	1 cut(s)	214
BspCNI	CTCAG	1 cut(s)	436
BspLI	GGNNCC	2 cut(s)	454, 575
BspMAI	CTGCAG	1 cut(s)	187
BspMI	ACCTGC	3 cut(s)	68, 176, 195
BspPI	GGATC	1 cut(s)	409
BspT107I	GGYRCC	1 cut(s)	573
BspTI	CTTAAG	1 cut(s)	290
BssMI	GATC	3 cut(s)	361, 391, 401
Bst4CI	ACNGT	2 cut(s)	34, 115
BstAFI	CTTAAG	1 cut(s)	290
BstC8I	GCNNGC	2 cut(s)	65, 274
BstDEI	CTNAG	4 cut(s)	218, 423, 480, 627
BstF5I	GGATG	4 cut(s)	46, 154, 306, 623
BstHHI	GCGC	2 cut(s)	325, 381
BstKTI	GATC	3 cut(s)	364, 394, 404
BstMBI	GATC	3 cut(s)	361, 391, 401
BstMWI	GCNNNNNNNGC	4 cut(s)	81, 140, 524, 571
BstNSI	RCATGY	2 cut(s)	67, 379
BstSFI	CTRYAG	3 cut(s)	48, 183, 199
BstV1I	GCAGC	2 cut(s)	470, 486
BstV2I	GAAGAC	1 cut(s)	62
BsuRI	GGCC	1 cut(s)	214
BtsCI	GGATG	4 cut(s)	46, 154, 306, 623
BtsI	GCAGTG	2 cut(s)	180, 513
BtsIMutI	CAGTG	3 cut(s)	120, 180, 513
BveI	ACCTGC	3 cut(s)	68, 176, 195
Cac8I	GCNNGC	2 cut(s)	65, 274
CfoI	GCGC	2 cut(s)	325, 381
CspCI	CAANNNNNGTGG	2 cut(s)	100, 135
CviAII	CATG	2 cut(s)	64, 376
DdeI	CTNAG	4 cut(s)	218, 423, 480, 627
DpnI	GATC	3 cut(s)	363, 393, 403
DpnII	GATC	3 cut(s)	361, 391, 401
FaeI	CATG	2 cut(s)	67, 379
FaqI	GGGAC	2 cut(s)	191, 364
FatI	CATG	2 cut(s)	63, 375
FauNDI	CATATG	1 cut(s)	396
FbaI	TGATCA	1 cut(s)	391
Fnu4HI	GCNGC	3 cut(s)	456, 459, 475
FokI	GGATG	3 cut(s)	53, 161, 313
Fsp4HI	GCNGC	3 cut(s)	456, 459, 475
FspBI	CTAG	1 cut(s)	386
GlaI	GCGC	2 cut(s)	324, 380
GluI	GCNGC	3 cut(s)	456, 459, 475
HaeIII	GGCC	1 cut(s)	214
HhaI	GCGC	2 cut(s)	325, 381
Hin1II	CATG	2 cut(s)	67, 379
Hin6I	GCGC	2 cut(s)	323, 379
HinP1I	GCGC	2 cut(s)	323, 379
HindIII	AAGCTT	1 cut(s)	356
Hpy188III	TCNNGA	2 cut(s)	191, 368
HpyAV	CCTTC	3 cut(s)	540, 544, 573
HpyCH4III	ACNGT	2 cut(s)	34, 115
HpyCH4V	TGCA	5 cut(s)	63, 134, 185, 233, 474
HpyF10VI	GCNNNNNNNGC	4 cut(s)	81, 140, 524, 571
HpyF3I	CTNAG	4 cut(s)	218, 423, 480, 627
Hsp92II	CATG	2 cut(s)	67, 379
HspAI	GCGC	2 cut(s)	323, 379
Ksp22I	TGATCA	1 cut(s)	391
Kzo9I	GATC	3 cut(s)	361, 391, 401
LmnI	GCTCC	2 cut(s)	44, 452
LpnPI	CCDG	8 cut(s)	73, 94, 171, 176, 190, 318, 410, 570
Lsp1109I	GCAGC	2 cut(s)	470, 486
LweI	GCATC	1 cut(s)	291
MaeI	CTAG	1 cut(s)	386
MaeIII	GTNAC	3 cut(s)	28, 221, 620
MalI	GATC	3 cut(s)	363, 393, 403
MboI	GATC	3 cut(s)	361, 391, 401
MboII	GAAGA	3 cut(s)	67, 356, 524
MfeI	CAATTG	2 cut(s)	336, 594
MluCI	AATT	6 cut(s)	69, 124, 163, 261, 336, 594
MnlI	CCTC	7 cut(s)	187, 204, 221, 364, 424, 549, 608
MseI	TTAA	3 cut(s)	21, 291, 561
MspCI	CTTAAG	1 cut(s)	290
MunI	CAATTG	2 cut(s)	336, 594
Mva1269I	GAATGC	2 cut(s)	10, 476
MwoI	GCNNNNNNNGC	4 cut(s)	81, 140, 524, 571
NdeI	CATATG	1 cut(s)	396
NdeII	GATC	3 cut(s)	361, 391, 401
NlaIII	CATG	2 cut(s)	67, 379
NlaIV	GGNNCC	2 cut(s)	454, 575
NmuCI	GTSAC	1 cut(s)	620
NspI	RCATGY	2 cut(s)	67, 379
PaeI	GCATGC	1 cut(s)	67
PctI	GAATGC	2 cut(s)	10, 476
PkrI	GCNGC	3 cut(s)	457, 460, 476
PspN4I	GGNNCC	2 cut(s)	454, 575
PstI	CTGCAG	1 cut(s)	187
SaqAI	TTAA	3 cut(s)	21, 291, 561
SatI	GCNGC	3 cut(s)	456, 459, 475
Sau3AI	GATC	3 cut(s)	361, 391, 401
SfaNI	GCATC	1 cut(s)	291
SfcI	CTRYAG	3 cut(s)	48, 183, 199
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
SphI	GCATGC	1 cut(s)	67
Sse9I	AATT	6 cut(s)	69, 124, 163, 261, 336, 594
SsiI	CCGC	2 cut(s)	456, 503
SspI	AATATT	1 cut(s)	157
SspMI	CTAG	1 cut(s)	386
TaaI	ACNGT	2 cut(s)	34, 115
TaqI	TCGA	1 cut(s)	404
TasI	AATT	6 cut(s)	69, 124, 163, 261, 336, 594
TauI	GCSGC	1 cut(s)	458
Tru1I	TTAA	3 cut(s)	21, 291, 561
Tru9I	TTAA	3 cut(s)	21, 291, 561
TscAI	CASTG	3 cut(s)	120, 187, 520
TseFI	GTSAC	1 cut(s)	620
TseI	GCWGC	2 cut(s)	458, 474
Tsp45I	GTSAC	1 cut(s)	620
TspDTI	ATGAA	2 cut(s)	7, 17
TspRI	CASTG	3 cut(s)	120, 187, 520
Vha464I	CTTAAG	1 cut(s)	290
XceI	RCATGY	2 cut(s)	67, 379
XspI	CTAG	1 cut(s)	386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.