Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0019767

Physical Location & Seq

Genomic Coordinates Forward (+)

8331395 .. 8332566

Gene Structure 1172 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016623

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGTTTGAGAAGTGGGGAAAGGGGTTGTGTGAGGCTGTGATTGTCGGGTCTCAGAAATTTTATTGCCCCTTTAGAGATTGCTCAGCGCTGTTGATTGATGATGGGGTAAAGGTTGTGAGGAAATCCGAGTGCCCGAGTTGCTATAGAATGTTCTGTGCGCAGTGTAAAGTTCCTTGGCACACCGGAATTGATTGTGCCGAGTTTAAAAGGCCCAAGAAGGATAAGAACTCAAAGGAGGATGCATTGTTGATGAAGCTTGCAAAGGAGAAGCACTGGAGGAGGTGCCCAAGGTGTGAGTTCTTTGTGGAACGTTCATCAGAAGTGCAGTTCCTAGGTGCGGACATCGTTTCTGCTACAGTTGTAGAGGGGCCAAATGGCCCAAATCAGCCAAATGTGGTTGTGGACTTTACGGGCGGAGAAGGAGGTGATACTATTAGGAGTCGAAATGGAAATCATTGTCTGATTCTGAGAAAGCACCCTATCTGGCTGTGGCAGGGGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0012505 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044444 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR zf-C3HC4

Protein Analysis

168

Amino Acids

19.0

Weight (kDa)

8.89

Isoelectric Point (pI)

34.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IBR	PF01485	16 - 65	1.3e-09	IBR domain, a half RING-finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019767)

Species	Orthologous Gene IDs
malus_domestica	MD02G1103300.v1.1
rosa_laevigata	RLG00000016623
rosa_multiflora	Rmu_sc0005612.1_g000005
rosa_rugosa	Rorug02G0056600 Rorug02G0056800
rosa_samantha	Rh2BG105800 Rh2DG106400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	159
AccB1I	GGYRCC	1 cut(s)	282
AciI	CCGC	2 cut(s)	338, 414
AclI	AACGTT	1 cut(s)	310
AcsI	RAATTY	1 cut(s)	56
AfeI	AGCGCT	1 cut(s)	87
AfiI	CCNNNNNNNGG	1 cut(s)	337
AluBI	AGCT	1 cut(s)	256
AluI	AGCT	1 cut(s)	256
Alw26I	GTCTC	1 cut(s)	54
Ama87I	CYCGRG	1 cut(s)	133
Aor51HI	AGCGCT	1 cut(s)	87
AoxI	GGCC	3 cut(s)	209, 368, 376
ApoI	RAATTY	1 cut(s)	56
AspA2I	CCTAGG	1 cut(s)	331
AspLEI	GCGC	2 cut(s)	88, 160
AspS9I	GGNCC	3 cut(s)	210, 368, 377
AsuHPI	GGTGA	1 cut(s)	437
AvaI	CYCGRG	1 cut(s)	133
AvrII	CCTAGG	1 cut(s)	331
BaeGI	GKGCMC	2 cut(s)	134, 287
BanI	GGYRCC	1 cut(s)	282
BccI	CCATC	1 cut(s)	95
BcoDI	GTCTC	1 cut(s)	54
BfaI	CTAG	1 cut(s)	332
BfmI	CTRYAG	2 cut(s)	142, 354
BfoI	RGCGCY	1 cut(s)	89
BlnI	CCTAGG	1 cut(s)	331
BlpI	GCTNAGC	1 cut(s)	82
BmeT110I	CYCGRG	1 cut(s)	133
BmgT120I	GGNCC	3 cut(s)	210, 368, 377
BmiI	GGNNCC	2 cut(s)	284, 369
BmsI	GCATC	1 cut(s)	229
BpmI	CTGGAG	1 cut(s)	295
Bpu1102I	GCTNAGC	1 cut(s)	82
BsaI	GGTCTC	1 cut(s)	54
BsaJI	CCNNGG	3 cut(s)	173, 287, 331
BsaWI	WCCGGW	1 cut(s)	182
Bsc4I	CCNNNNNNNGG	1 cut(s)	337
Bse1I	ACTGG	1 cut(s)	278
BseDI	CCNNGG	3 cut(s)	173, 287, 331
BseGI	GGATG	1 cut(s)	244
BseLI	CCNNNNNNNGG	1 cut(s)	337
BseMII	CTCAG	3 cut(s)	65, 96, 458
BseNI	ACTGG	1 cut(s)	278
BseRI	GAGGAG	1 cut(s)	292
BseSI	GKGCMC	2 cut(s)	134, 287
BsgI	GTGCAG	1 cut(s)	344
BshFI	GGCC	3 cut(s)	211, 370, 378
BshNI	GGYRCC	1 cut(s)	282
BsiHKCI	CYCGRG	1 cut(s)	133
BsiSI	CCGG	1 cut(s)	183
BslI	CCNNNNNNNGG	1 cut(s)	337
BsmAI	GTCTC	1 cut(s)	54
BsnI	GGCC	3 cut(s)	211, 370, 378
Bso31I	GGTCTC	1 cut(s)	54
BsoBI	CYCGRG	1 cut(s)	133
Bsp1286I	GDGCHC	2 cut(s)	134, 287
Bsp1720I	GCTNAGC	1 cut(s)	82
BspACI	CCGC	2 cut(s)	338, 414
BspANI	GGCC	3 cut(s)	211, 370, 378
BspCNI	CTCAG	3 cut(s)	64, 95, 459
BspLI	GGNNCC	2 cut(s)	284, 369
BspT107I	GGYRCC	1 cut(s)	282
BspTNI	GGTCTC	1 cut(s)	54
BsrI	ACTGG	1 cut(s)	278
BssECI	CCNNGG	3 cut(s)	173, 287, 331
BssT1I	CCWWGG	3 cut(s)	173, 287, 331
Bst4CI	ACNGT	1 cut(s)	358
BstC8I	GCNNGC	1 cut(s)	258
BstDEI	CTNAG	3 cut(s)	51, 82, 467
BstF5I	GGATG	1 cut(s)	244
BstH2I	RGCGCY	1 cut(s)	89
BstHHI	GCGC	2 cut(s)	88, 160
BstMAI	GTCTC	1 cut(s)	54
BstMWI	GCNNNNNNNGC	1 cut(s)	138
BstSFI	CTRYAG	2 cut(s)	142, 354
BstSLI	GKGCMC	2 cut(s)	134, 287
BsuRI	GGCC	3 cut(s)	211, 370, 378
BtsCI	GGATG	1 cut(s)	244
BtsI	GCAGTG	1 cut(s)	167
BtsIMutI	CAGTG	2 cut(s)	167, 271
Cac8I	GCNNGC	1 cut(s)	258
CfoI	GCGC	2 cut(s)	88, 160
Cfr13I	GGNCC	3 cut(s)	210, 368, 377
CviJI	RGCY	7 cut(s)	35, 211, 256, 370, 378, 388, 487
CviKI_1	RGCY	7 cut(s)	35, 211, 256, 370, 378, 388, 487
DdeI	CTNAG	3 cut(s)	51, 82, 467
DraI	TTTAAA	1 cut(s)	205
EciI	GGCGGA	1 cut(s)	429
Eco130I	CCWWGG	3 cut(s)	173, 287, 331
Eco31I	GGTCTC	1 cut(s)	54
Eco47III	AGCGCT	1 cut(s)	87
Eco88I	CYCGRG	1 cut(s)	133
EcoT14I	CCWWGG	3 cut(s)	173, 287, 331
EcoT22I	ATGCAT	1 cut(s)	244
ErhI	CCWWGG	3 cut(s)	173, 287, 331
FaiI	YATR	1 cut(s)	144
FokI	GGATG	1 cut(s)	251
FspBI	CTAG	1 cut(s)	332
FspI	TGCGCA	1 cut(s)	159
GlaI	GCGC	2 cut(s)	87, 159
GsuI	CTGGAG	1 cut(s)	295
HaeII	RGCGCY	1 cut(s)	89
HaeIII	GGCC	3 cut(s)	211, 370, 378
HapII	CCGG	1 cut(s)	183
HhaI	GCGC	2 cut(s)	88, 160
Hin6I	GCGC	2 cut(s)	86, 158
HinP1I	GCGC	2 cut(s)	86, 158
HindIII	AAGCTT	1 cut(s)	254
HinfI	GANTC	2 cut(s)	439, 463
HpaII	CCGG	1 cut(s)	183
HphI	GGTGA	1 cut(s)	437
Hpy166II	GTNNAC	1 cut(s)	403
Hpy188I	TCNGA	5 cut(s)	54, 127, 319, 462, 468
Hpy8I	GTNNAC	1 cut(s)	403
HpyAV	CCTTC	2 cut(s)	211, 413
HpyCH4III	ACNGT	1 cut(s)	358
HpyCH4IV	ACGT	1 cut(s)	310
HpyCH4V	TGCA	3 cut(s)	242, 260, 325
HpyF10VI	GCNNNNNNNGC	1 cut(s)	138
HpyF3I	CTNAG	3 cut(s)	51, 82, 467
HpySE526I	ACGT	1 cut(s)	310
HspAI	GCGC	2 cut(s)	86, 158
LpnPI	CCDG	4 cut(s)	196, 259, 469, 479
LweI	GCATC	1 cut(s)	229
MaeI	CTAG	1 cut(s)	332
MaeII	ACGT	1 cut(s)	310
MhlI	GDGCHC	2 cut(s)	134, 287
MluCI	AATT	2 cut(s)	56, 186
MlyI	GAGTC	1 cut(s)	448
MnlI	CCTC	7 cut(s)	25, 111, 229, 270, 273, 358, 416
Mph1103I	ATGCAT	1 cut(s)	244
MseI	TTAA	1 cut(s)	204
MspI	CCGG	1 cut(s)	183
MwoI	GCNNNNNNNGC	1 cut(s)	138
NlaIV	GGNNCC	2 cut(s)	284, 369
NmeAIII	GCCGAG	1 cut(s)	223
NsbI	TGCGCA	1 cut(s)	159
NsiI	ATGCAT	1 cut(s)	244
PfeI	GAWTC	1 cut(s)	463
PleI	GAGTC	1 cut(s)	447
PpsI	GAGTC	1 cut(s)	447
Psp1406I	AACGTT	1 cut(s)	310
PspN4I	GGNNCC	2 cut(s)	284, 369
PspPI	GGNCC	3 cut(s)	210, 368, 377
SaqAI	TTAA	1 cut(s)	204
Sau96I	GGNCC	3 cut(s)	210, 368, 377
SchI	GAGTC	1 cut(s)	448
SduI	GDGCHC	2 cut(s)	134, 287
SetI	ASST	7 cut(s)	114, 258, 284, 293, 313, 337, 427
SfaNI	GCATC	1 cut(s)	229
SfcI	CTRYAG	2 cut(s)	142, 354
Sse9I	AATT	2 cut(s)	56, 186
SsiI	CCGC	2 cut(s)	338, 414
SspMI	CTAG	1 cut(s)	332
StyI	CCWWGG	3 cut(s)	173, 287, 331
TaaI	ACNGT	1 cut(s)	358
TaiI	ACGT	1 cut(s)	313
TaqI	TCGA	1 cut(s)	442
TasI	AATT	2 cut(s)	56, 186
TfiI	GAWTC	1 cut(s)	463
Tru1I	TTAA	1 cut(s)	204
Tru9I	TTAA	1 cut(s)	204
TscAI	CASTG	2 cut(s)	167, 278
TspDTI	ATGAA	2 cut(s)	266, 303
TspRI	CASTG	2 cut(s)	167, 278
XapI	RAATTY	1 cut(s)	56
XmaJI	CCTAGG	1 cut(s)	331
XspI	CTAG	1 cut(s)	332
Zsp2I	ATGCAT	1 cut(s)	244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.