Rmu_sc0005612.1_g000005

In Between Ring fingers

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005612.1
OG0019767
Physical Location & Seq
Reverse (-)
18062 .. 18391
330 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005612.1_g000005.1.cds

Sequence Viewer

Length: 330 bp
atggagatcgtgaacattgaagacgatgatgccttctccttcacatctatcttgcttgaaggctcgaggaagtctgaggcagtctcagtcgatgatgaaagagacctcaaatcagtcatggcttctcttctcaaatcggctcgctctcccacaaaattaaatcaggataagaactcaaaggaggatgcattgttgatgaagcttgcaaaggagaagcactggaggaggtgcccaaggtgtgagttctttgtggaacgttcatcaggctgcaataaaatgaagtgcaggctaggtctgtactctgtattccctcctagactctttatttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
IBR

Protein Analysis

109

Amino Acids

12.53

Weight (kDa)

8.73

Isoelectric Point (pI)

52.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019767)

Species Orthologous Gene IDs
malus_domestica MD02G1103300.v1.1
rosa_laevigata RLG00000016623
rosa_multiflora Rmu_sc0005612.1_g000005
rosa_rugosa Rorug02G0056600 Rorug02G0056800
rosa_samantha Rh2BG105800 Rh2DG106400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 228
AclI AACGTT 1 cut(s) 256
AfaI GTAC 1 cut(s) 299
AgsI TTSAA 2 cut(s) 20, 59
AluBI AGCT 1 cut(s) 202
AluI AGCT 1 cut(s) 202
Alw26I GTCTC 2 cut(s) 88, 96
Ama87I CYCGRG 1 cut(s) 64
ApeKI GCWGC 1 cut(s) 267
ArsI GACNNNNNNTTYG 1 cut(s) 309
AvaI CYCGRG 1 cut(s) 64
BaeGI GKGCMC 1 cut(s) 233
BanI GGYRCC 1 cut(s) 228
BbsI GAAGAC 1 cut(s) 27
BbvI GCAGC 1 cut(s) 254
BcoDI GTCTC 2 cut(s) 88, 96
BfaI CTAG 2 cut(s) 290, 315
BisI GCNGC 1 cut(s) 268
BlsI GCNGC 1 cut(s) 269
BmeT110I CYCGRG 1 cut(s) 64
BmiI GGNNCC 1 cut(s) 230
BmsI GCATC 2 cut(s) 19, 175
BpiI GAAGAC 1 cut(s) 27
BplI GAGNNNNNCTC 2 cut(s) 68, 100
BpmI CTGGAG 1 cut(s) 241
BsaI GGTCTC 1 cut(s) 96
BsaJI CCNNGG 1 cut(s) 233
Bse1I ACTGG 1 cut(s) 224
BseDI CCNNGG 1 cut(s) 233
BseGI GGATG 1 cut(s) 190
BseMII CTCAG 2 cut(s) 66, 99
BseNI ACTGG 1 cut(s) 224
BseRI GAGGAG 1 cut(s) 238
BseSI GKGCMC 1 cut(s) 233
BseXI GCAGC 1 cut(s) 254
BsgI GTGCAG 1 cut(s) 304
BshNI GGYRCC 1 cut(s) 228
BsiHKCI CYCGRG 1 cut(s) 64
BsmAI GTCTC 2 cut(s) 88, 96
Bso31I GGTCTC 1 cut(s) 96
BsoBI CYCGRG 1 cut(s) 64
Bsp1286I GDGCHC 1 cut(s) 233
Bsp143I GATC 1 cut(s) 6
BspCNI CTCAG 2 cut(s) 67, 98
BspLI GGNNCC 1 cut(s) 230
BspT107I GGYRCC 1 cut(s) 228
BspTNI GGTCTC 1 cut(s) 96
BsrI ACTGG 1 cut(s) 224
BssECI CCNNGG 1 cut(s) 233
BssMI GATC 1 cut(s) 6
BssT1I CCWWGG 1 cut(s) 233
Bst6I CTCTTC 1 cut(s) 132
BstC8I GCNNGC 3 cut(s) 142, 204, 287
BstDEI CTNAG 2 cut(s) 75, 85
BstF5I GGATG 1 cut(s) 190
BstKTI GATC 1 cut(s) 9
BstMAI GTCTC 2 cut(s) 88, 96
BstMBI GATC 1 cut(s) 6
BstSLI GKGCMC 1 cut(s) 233
BstV1I GCAGC 1 cut(s) 254
BstV2I GAAGAC 1 cut(s) 27
BtsCI GGATG 1 cut(s) 190
BtsIMutI CAGTG 1 cut(s) 217
Cac8I GCNNGC 3 cut(s) 142, 204, 287
Csp6I GTAC 1 cut(s) 298
CviAII CATG 1 cut(s) 118
CviJI RGCY 6 cut(s) 63, 122, 140, 202, 267, 289
CviKI_1 RGCY 6 cut(s) 63, 122, 140, 202, 267, 289
CviQI GTAC 1 cut(s) 298
DdeI CTNAG 2 cut(s) 75, 85
DpnI GATC 1 cut(s) 8
DpnII GATC 1 cut(s) 6
Eam1104I CTCTTC 1 cut(s) 132
EarI CTCTTC 1 cut(s) 132
Eco130I CCWWGG 1 cut(s) 233
Eco31I GGTCTC 1 cut(s) 96
Eco88I CYCGRG 1 cut(s) 64
EcoT14I CCWWGG 1 cut(s) 233
EcoT22I ATGCAT 1 cut(s) 190
ErhI CCWWGG 1 cut(s) 233
FaeI CATG 1 cut(s) 121
FaiI YATR 1 cut(s) 119
FatI CATG 1 cut(s) 117
Fnu4HI GCNGC 1 cut(s) 268
FokI GGATG 1 cut(s) 197
Fsp4HI GCNGC 1 cut(s) 268
FspBI CTAG 2 cut(s) 290, 315
GluI GCNGC 1 cut(s) 268
GsuI CTGGAG 1 cut(s) 241
Hin1II CATG 1 cut(s) 121
HindIII AAGCTT 1 cut(s) 200
HinfI GANTC 1 cut(s) 318
Hpy166II GTNNAC 1 cut(s) 13
Hpy188I TCNGA 1 cut(s) 76
Hpy188III TCNNGA 2 cut(s) 10, 164
Hpy8I GTNNAC 1 cut(s) 13
HpyAV CCTTC 3 cut(s) 43, 49, 53
HpyCH4IV ACGT 1 cut(s) 256
HpyCH4V TGCA 4 cut(s) 188, 206, 270, 285
HpyF3I CTNAG 2 cut(s) 75, 85
HpySE526I ACGT 1 cut(s) 256
Hsp92II CATG 1 cut(s) 121
Kzo9I GATC 1 cut(s) 6
LpnPI CCDG 4 cut(s) 149, 205, 249, 271
Lsp1109I GCAGC 1 cut(s) 254
LweI GCATC 2 cut(s) 19, 175
MaeI CTAG 2 cut(s) 290, 315
MaeII ACGT 1 cut(s) 256
MalI GATC 1 cut(s) 8
MboI GATC 1 cut(s) 6
MboII GAAGA 2 cut(s) 32, 119
MhlI GDGCHC 1 cut(s) 233
MluCI AATT 1 cut(s) 155
MlyI GAGTC 1 cut(s) 312
MnlI CCTC 7 cut(s) 60, 70, 116, 175, 216, 219, 321
Mph1103I ATGCAT 1 cut(s) 190
MseI TTAA 1 cut(s) 158
NdeII GATC 1 cut(s) 6
NlaIII CATG 1 cut(s) 121
NlaIV GGNNCC 1 cut(s) 230
NsiI ATGCAT 1 cut(s) 190
PaeR7I CTCGAG 1 cut(s) 64
PkrI GCNGC 1 cut(s) 269
PleI GAGTC 1 cut(s) 312
PpsI GAGTC 1 cut(s) 312
Psp1406I AACGTT 1 cut(s) 256
PspN4I GGNNCC 1 cut(s) 230
PspXI VCTCGAGB 1 cut(s) 64
RsaI GTAC 1 cut(s) 299
RsaNI GTAC 1 cut(s) 298
SaqAI TTAA 1 cut(s) 158
SatI GCNGC 1 cut(s) 268
Sau3AI GATC 1 cut(s) 6
SchI GAGTC 1 cut(s) 312
SduI GDGCHC 1 cut(s) 233
SetI ASST 6 cut(s) 108, 204, 230, 239, 259, 295
SfaNI GCATC 2 cut(s) 19, 175
Sfr274I CTCGAG 1 cut(s) 64
SlaI CTCGAG 1 cut(s) 64
SmlI CTYRAG 1 cut(s) 64
SmoI CTYRAG 1 cut(s) 64
Sse9I AATT 1 cut(s) 155
SspMI CTAG 2 cut(s) 290, 315
StyI CCWWGG 1 cut(s) 233
TaiI ACGT 1 cut(s) 259
TaqI TCGA 2 cut(s) 65, 90
TasI AATT 1 cut(s) 155
TatI WGTACW 1 cut(s) 297
Tru1I TTAA 1 cut(s) 158
Tru9I TTAA 1 cut(s) 158
TscAI CASTG 1 cut(s) 224
TseI GCWGC 1 cut(s) 267
TspDTI ATGAA 4 cut(s) 111, 212, 249, 293
TspRI CASTG 1 cut(s) 224
XhoI CTCGAG 1 cut(s) 64
XspI CTAG 2 cut(s) 290, 315
Zsp2I ATGCAT 1 cut(s) 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.