Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0020378

Physical Location & Seq

Genomic Coordinates Reverse (-)

9033274 .. 9033690

Gene Structure 417 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1111400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGTTCCTTTACATCACAATCTTGACGGTGATAGGAGTCGTCAAGTCGAAGTCGAAGTGTACGACGGTCGGGATTCAAGGCATCGCTTGGGCTTTTGGCAGGACCATCTTCGCCCTCGTCTACAGCACCGTCGGCATCTCCAGTGGTCATATAAACCCAGCGGTGACTTTCGGGCTGTTTTTGGCCAGGAAGTTGTCGCTGACCAGGGCGGTGTTATACATAATTATGCAGACCCTCGGAGCTATCGCCGGTGCCGCCGTCGCGAAGGGCTTCGAGAAGAGCTCCACCTTCGAGATACTGGGCGGTGGTGCCAACTCTGTTGCCCATGGTTACACCAAGGGTAAAGAACTTGGTGCTGAGATCATCGGCACCTTTGTCTTCGTCTACACCGTTTTCTCCGCTACCAACGACCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0008150 GO:0009987 GO:0015250 GO:0015267 GO:0015318 GO:0016020 GO:0016021 GO:0016043 GO:0022607 GO:0022803 GO:0022838 GO:0022857 GO:0031224 GO:0031226 GO:0032991 GO:0034220 GO:0042044 GO:0043933 GO:0044085 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0051259 GO:0051260 GO:0051262 GO:0051289 GO:0051290 GO:0051291 GO:0055085 GO:0065003 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

139

Amino Acids

14.53

Weight (kDa)

9.67

Isoelectric Point (pI)

13.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	1 - 137	4.1e-36	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0020378)

Species	Orthologous Gene IDs
malus_domestica	MD00G1065600.v1.1 MD02G1111400.v1.1
rosa_chinensis	RchiOBHm_Chr2g0098701
rosa_multiflora	Rmu_co8065218.1_g000001
rosa_samantha	Rh2BG125400 Rh2DG127500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	251, 308, 368
AccI	GTMKAC	2 cut(s)	120, 384
AccII	CGCG	1 cut(s)	263
AciI	CCGC	5 cut(s)	161, 209, 255, 303, 399
AcoI	YGGCCR	1 cut(s)	183
AfaI	GTAC	1 cut(s)	61
AgsI	TTSAA	1 cut(s)	77
AjnI	CCWGG	2 cut(s)	185, 203
AluBI	AGCT	2 cut(s)	242, 282
AluI	AGCT	2 cut(s)	242, 282
Alw21I	GWGCWC	1 cut(s)	284
AoxI	GGCC	1 cut(s)	183
Asp700I	GAANNNNTTC	1 cut(s)	269
AspS9I	GGNCC	1 cut(s)	102
AsuHPI	GGTGA	2 cut(s)	40, 175
AvaII	GGWCC	1 cut(s)	102
BalI	TGGCCA	1 cut(s)	185
BanI	GGYRCC	3 cut(s)	251, 308, 368
BanII	GRGCYC	1 cut(s)	284
BbsI	GAAGAC	1 cut(s)	370
Bbv12I	GWGCWC	1 cut(s)	284
BccI	CCATC	1 cut(s)	113
BceAI	ACGGC	1 cut(s)	242
BciT130I	CCWGG	2 cut(s)	187, 205
BfmI	CTRYAG	1 cut(s)	121
BisI	GCNGC	1 cut(s)	255
BlsI	GCNGC	1 cut(s)	256
Bme1390I	CCNGG	2 cut(s)	187, 205
Bme18I	GGWCC	1 cut(s)	102
BmgT120I	GGNCC	1 cut(s)	102
BmiI	GGNNCC	3 cut(s)	253, 310, 370
BmrFI	CCNGG	2 cut(s)	187, 205
BmrI	ACTGGG	1 cut(s)	308
BmsI	GCATC	2 cut(s)	90, 144
BmuI	ACTGGG	1 cut(s)	308
BpiI	GAAGAC	1 cut(s)	370
BplI	GAGNNNNNCTC	2 cut(s)	266, 298
BpmI	CTGGAG	1 cut(s)	124
BsaJI	CCNNGG	4 cut(s)	204, 235, 325, 336
Bse118I	RCCGGY	1 cut(s)	248
Bse1I	ACTGG	2 cut(s)	141, 303
BseBI	CCWGG	2 cut(s)	187, 205
BseDI	CCNNGG	4 cut(s)	204, 235, 325, 336
BseMII	CTCAG	1 cut(s)	348
BseNI	ACTGG	2 cut(s)	141, 303
BseYI	CCCAGC	1 cut(s)	157
Bsh1236I	CGCG	1 cut(s)	263
Bsh1285I	CGRYCG	1 cut(s)	69
BshFI	GGCC	1 cut(s)	185
BshNI	GGYRCC	3 cut(s)	251, 308, 368
BsiEI	CGRYCG	1 cut(s)	69
BsiHKAI	GWGCWC	1 cut(s)	284
BsiSI	CCGG	1 cut(s)	249
BsnI	GGCC	1 cut(s)	185
Bsp1286I	GDGCHC	1 cut(s)	284
Bsp143I	GATC	1 cut(s)	360
Bsp19I	CCATGG	1 cut(s)	325
Bsp68I	TCGCGA	1 cut(s)	263
BspACI	CCGC	5 cut(s)	161, 209, 255, 303, 399
BspANI	GGCC	1 cut(s)	185
BspCNI	CTCAG	1 cut(s)	349
BspFNI	CGCG	1 cut(s)	263
BspLI	GGNNCC	3 cut(s)	253, 310, 370
BspQI	GCTCTTC	1 cut(s)	272
BspT107I	GGYRCC	3 cut(s)	251, 308, 368
BsrFI	RCCGGY	1 cut(s)	248
BsrI	ACTGG	2 cut(s)	141, 303
BssAI	RCCGGY	1 cut(s)	248
BssECI	CCNNGG	4 cut(s)	204, 235, 325, 336
BssMI	GATC	1 cut(s)	360
BssT1I	CCWWGG	2 cut(s)	325, 336
Bst2UI	CCWGG	2 cut(s)	187, 205
Bst4CI	ACNGT	4 cut(s)	28, 67, 130, 391
Bst6I	CTCTTC	1 cut(s)	272
BstDEI	CTNAG	1 cut(s)	357
BstDSI	CCRYGG	1 cut(s)	325
BstFNI	CGCG	1 cut(s)	263
BstKTI	GATC	1 cut(s)	363
BstMBI	GATC	1 cut(s)	360
BstMCI	CGRYCG	1 cut(s)	69
BstMWI	GCNNNNNNNGC	3 cut(s)	132, 254, 260
BstNI	CCWGG	2 cut(s)	187, 205
BstSCI	CCNGG	2 cut(s)	185, 203
BstSFI	CTRYAG	1 cut(s)	121
BstUI	CGCG	1 cut(s)	263
BstV2I	GAAGAC	1 cut(s)	370
BsuRI	GGCC	1 cut(s)	185
BtgI	CCRYGG	1 cut(s)	325
BtgZI	GCGATG	1 cut(s)	67
BtsIMutI	CAGTG	1 cut(s)	148
BtuMI	TCGCGA	1 cut(s)	263
Cfr10I	RCCGGY	1 cut(s)	248
Cfr13I	GGNCC	1 cut(s)	102
Csp6I	GTAC	1 cut(s)	60
CviAII	CATG	1 cut(s)	326
CviJI	RGCY	6 cut(s)	92, 175, 185, 242, 270, 282
CviKI_1	RGCY	6 cut(s)	92, 175, 185, 242, 270, 282
CviQI	GTAC	1 cut(s)	60
DdeI	CTNAG	1 cut(s)	357
DpnI	GATC	1 cut(s)	362
DpnII	GATC	1 cut(s)	360
EaeI	YGGCCR	1 cut(s)	183
Eam1104I	CTCTTC	1 cut(s)	272
EarI	CTCTTC	1 cut(s)	272
Ecl136II	GAGCTC	1 cut(s)	282
Eco130I	CCWWGG	2 cut(s)	325, 336
Eco24I	GRGCYC	1 cut(s)	284
Eco47I	GGWCC	1 cut(s)	102
Eco53kI	GAGCTC	1 cut(s)	282
EcoICRI	GAGCTC	1 cut(s)	282
EcoRII	CCWGG	2 cut(s)	185, 203
EcoT14I	CCWWGG	2 cut(s)	325, 336
EcoT38I	GRGCYC	1 cut(s)	284
ErhI	CCWWGG	2 cut(s)	325, 336
FaeI	CATG	1 cut(s)	329
FaiI	YATR	6 cut(s)	150, 152, 217, 221, 227, 327
FatI	CATG	1 cut(s)	325
FblI	GTMKAC	2 cut(s)	120, 384
Fnu4HI	GCNGC	1 cut(s)	255
FriOI	GRGCYC	1 cut(s)	284
Fsp4HI	GCNGC	1 cut(s)	255
GluI	GCNGC	1 cut(s)	255
GsaI	CCCAGC	1 cut(s)	161
GsuI	CTGGAG	1 cut(s)	124
HaeIII	GGCC	1 cut(s)	185
HapII	CCGG	1 cut(s)	249
Hin1II	CATG	1 cut(s)	329
HinfI	GANTC	2 cut(s)	36, 73
HpaII	CCGG	1 cut(s)	249
HphI	GGTGA	2 cut(s)	40, 175
Hpy166II	GTNNAC	3 cut(s)	60, 121, 385
Hpy188I	TCNGA	1 cut(s)	239
Hpy188III	TCNNGA	5 cut(s)	22, 70, 262, 274, 292
Hpy8I	GTNNAC	3 cut(s)	60, 121, 385
Hpy99I	CGWCG	3 cut(s)	67, 134, 263
HpyAV	CCTTC	2 cut(s)	259, 298
HpyCH4III	ACNGT	4 cut(s)	28, 67, 130, 391
HpyCH4V	TGCA	1 cut(s)	229
HpyF10VI	GCNNNNNNNGC	3 cut(s)	132, 254, 260
HpyF3I	CTNAG	1 cut(s)	357
Hsp92II	CATG	1 cut(s)	329
Kzo9I	GATC	1 cut(s)	360
LguI	GCTCTTC	1 cut(s)	272
LmnI	GCTCC	2 cut(s)	239, 287
LpnPI	CCDG	9 cut(s)	85, 154, 171, 172, 190, 199, 217, 262, 284
LweI	GCATC	2 cut(s)	90, 144
MaeIII	GTNAC	2 cut(s)	163, 329
MalI	GATC	1 cut(s)	362
MboI	GATC	1 cut(s)	360
MboII	GAAGA	3 cut(s)	100, 289, 370
MhlI	GDGCHC	1 cut(s)	284
MlsI	TGGCCA	1 cut(s)	185
MluCI	AATT	1 cut(s)	222
MluNI	TGGCCA	1 cut(s)	185
MlyI	GAGTC	1 cut(s)	45
MnlI	CCTC	2 cut(s)	125, 245
Mox20I	TGGCCA	1 cut(s)	185
MroXI	GAANNNNTTC	1 cut(s)	269
MscI	TGGCCA	1 cut(s)	185
MslI	CAYNNNNRTG	1 cut(s)	224
Msp20I	TGGCCA	1 cut(s)	185
MspA1I	CMGCKG	1 cut(s)	161
MspI	CCGG	1 cut(s)	249
MspR9I	CCNGG	2 cut(s)	187, 205
MvaI	CCWGG	2 cut(s)	187, 205
MvnI	CGCG	1 cut(s)	263
MwoI	GCNNNNNNNGC	3 cut(s)	132, 254, 260
NcoI	CCATGG	1 cut(s)	325
NdeII	GATC	1 cut(s)	360
NlaIII	CATG	1 cut(s)	329
NlaIV	GGNNCC	3 cut(s)	253, 310, 370
NmuCI	GTSAC	1 cut(s)	163
NruI	TCGCGA	1 cut(s)	263
PciSI	GCTCTTC	1 cut(s)	272
PcsI	WCGNNNNNNNCGW	2 cut(s)	59, 387
PdmI	GAANNNNTTC	1 cut(s)	269
PfeI	GAWTC	1 cut(s)	73
PkrI	GCNGC	1 cut(s)	256
PleI	GAGTC	1 cut(s)	44
PpsI	GAGTC	1 cut(s)	44
Psp124BI	GAGCTC	1 cut(s)	284
Psp6I	CCWGG	2 cut(s)	185, 203
PspFI	CCCAGC	1 cut(s)	157
PspGI	CCWGG	2 cut(s)	185, 203
PspN4I	GGNNCC	3 cut(s)	253, 310, 370
PspPI	GGNCC	1 cut(s)	102
RruI	TCGCGA	1 cut(s)	263
RsaI	GTAC	1 cut(s)	61
RsaNI	GTAC	1 cut(s)	60
RseI	CAYNNNNRTG	1 cut(s)	224
SacI	GAGCTC	1 cut(s)	284
SapI	GCTCTTC	1 cut(s)	272
SatI	GCNGC	1 cut(s)	255
Sau3AI	GATC	1 cut(s)	360
Sau96I	GGNCC	1 cut(s)	102
SchI	GAGTC	1 cut(s)	45
ScrFI	CCNGG	2 cut(s)	187, 205
SduI	GDGCHC	1 cut(s)	284
SetI	ASST	4 cut(s)	244, 284, 290, 374
SfaNI	GCATC	2 cut(s)	90, 144
SfcI	CTRYAG	1 cut(s)	121
SgrAI	CRCCGGYG	1 cut(s)	248
SinI	GGWCC	1 cut(s)	102
SmiMI	CAYNNNNRTG	1 cut(s)	224
Sse9I	AATT	1 cut(s)	222
SsiI	CCGC	5 cut(s)	161, 209, 255, 303, 399
SstI	GAGCTC	1 cut(s)	284
StyD4I	CCNGG	2 cut(s)	185, 203
StyI	CCWWGG	2 cut(s)	325, 336
TaaI	ACNGT	4 cut(s)	28, 67, 130, 391
TaqI	TCGA	4 cut(s)	47, 53, 273, 291
TasI	AATT	1 cut(s)	222
TauI	GCSGC	1 cut(s)	257
TfiI	GAWTC	1 cut(s)	73
TscAI	CASTG	1 cut(s)	148
TseFI	GTSAC	1 cut(s)	163
Tsp45I	GTSAC	1 cut(s)	163
TspRI	CASTG	1 cut(s)	148
VpaK11BI	GGWCC	1 cut(s)	102
XmiI	GTMKAC	2 cut(s)	120, 384
XmnI	GAANNNNTTC	1 cut(s)	269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.