Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8065218.1

Orthogroup ID

OG0020378

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 572

Gene Structure 572 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8065218.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 236 bp

gtggtcacataaacccagctgtgacatttggtctcttcttggcaaggaaactctccctgaccagggctgtgttctatatagtgatgcaaacccttggggcaattgctggtgctgctgtggtcaaggggtttgagggcaacacccggtatgaagtgctcggtggtggagctaactcggtgaaccatggctataccaagggtgatggccttggtgctgagattgttggcacttttgtt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006833 GO:0006950 GO:0008150 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009941 GO:0010035 GO:0015250 GO:0015267 GO:0015318 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022857 GO:0030054 GO:0031224 GO:0031226 GO:0031967 GO:0031975 GO:0034220 GO:0042044 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071944 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

78

Amino Acids

8.04

Weight (kDa)

9.31

Isoelectric Point (pI)

8.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020378)

Species	Orthologous Gene IDs
malus_domestica	MD00G1065600.v1.1 MD02G1111400.v1.1
rosa_chinensis	RchiOBHm_Chr2g0098701
rosa_multiflora	Rmu_co8065218.1_g000001
rosa_samantha	Rh2BG125400 Rh2DG127500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	2 cut(s)	62, 63
AhdI	GACNNNNNGTC	1 cut(s)	29
AjnI	CCWGG	1 cut(s)	61
AluBI	AGCT	2 cut(s)	19, 169
AluI	AGCT	2 cut(s)	19, 169
Alw21I	GWGCWC	1 cut(s)	158
Alw26I	GTCTC	1 cut(s)	37
AoxI	GGCC	1 cut(s)	204
ApeKI	GCWGC	1 cut(s)	112
AsuC2I	CCSGG	1 cut(s)	144
AsuHPI	GGTGA	2 cut(s)	189, 211
Bbv12I	GWGCWC	1 cut(s)	158
BbvI	GCAGC	1 cut(s)	99
BccI	CCATC	1 cut(s)	196
BciT130I	CCWGG	1 cut(s)	63
BcnI	CCSGG	1 cut(s)	144
BcoDI	GTCTC	1 cut(s)	37
BisI	GCNGC	1 cut(s)	113
BlsI	GCNGC	1 cut(s)	114
Bme1390I	CCNGG	2 cut(s)	63, 144
BmeRI	GACNNNNNGTC	1 cut(s)	29
BmrFI	CCNGG	2 cut(s)	63, 144
BmsI	GCATC	1 cut(s)	74
BpuMI	CCSGG	1 cut(s)	144
BsaI	GGTCTC	1 cut(s)	37
BsaJI	CCNNGG	5 cut(s)	62, 93, 183, 194, 207
Bsc4I	CCNNNNNNNGG	2 cut(s)	62, 63
BseBI	CCWGG	1 cut(s)	63
BseDI	CCNNGG	5 cut(s)	62, 93, 183, 194, 207
BseLI	CCNNNNNNNGG	2 cut(s)	62, 63
BseMII	CTCAG	1 cut(s)	206
BseXI	GCAGC	1 cut(s)	99
BseYI	CCCAGC	1 cut(s)	15
BshFI	GGCC	1 cut(s)	206
BsiHKAI	GWGCWC	1 cut(s)	158
BsiSI	CCGG	1 cut(s)	144
BslI	CCNNNNNNNGG	2 cut(s)	62, 63
BsmAI	GTCTC	1 cut(s)	37
BsnI	GGCC	1 cut(s)	206
Bso31I	GGTCTC	1 cut(s)	37
Bsp1286I	GDGCHC	1 cut(s)	158
Bsp19I	CCATGG	1 cut(s)	183
BspANI	GGCC	1 cut(s)	206
BspCNI	CTCAG	1 cut(s)	207
BspTNI	GGTCTC	1 cut(s)	37
BssECI	CCNNGG	5 cut(s)	62, 93, 183, 194, 207
BssT1I	CCWWGG	4 cut(s)	93, 183, 194, 207
Bst2UI	CCWGG	1 cut(s)	63
Bst6I	CTCTTC	1 cut(s)	40
BstDEI	CTNAG	1 cut(s)	215
BstDSI	CCRYGG	1 cut(s)	183
BstMAI	GTCTC	1 cut(s)	37
BstMWI	GCNNNNNNNGC	1 cut(s)	112
BstNI	CCWGG	1 cut(s)	63
BstSCI	CCNGG	2 cut(s)	61, 142
BstV1I	GCAGC	1 cut(s)	99
BsuRI	GGCC	1 cut(s)	206
BtgI	CCRYGG	1 cut(s)	183
CviAII	CATG	1 cut(s)	184
CviJI	RGCY	5 cut(s)	19, 67, 169, 188, 206
CviKI_1	RGCY	5 cut(s)	19, 67, 169, 188, 206
DdeI	CTNAG	1 cut(s)	215
DriI	GACNNNNNGTC	1 cut(s)	29
Eam1104I	CTCTTC	1 cut(s)	40
Eam1105I	GACNNNNNGTC	1 cut(s)	29
EarI	CTCTTC	1 cut(s)	40
Eco130I	CCWWGG	4 cut(s)	93, 183, 194, 207
Eco31I	GGTCTC	1 cut(s)	37
EcoRII	CCWGG	1 cut(s)	61
EcoT14I	CCWWGG	4 cut(s)	93, 183, 194, 207
ErhI	CCWWGG	4 cut(s)	93, 183, 194, 207
FaeI	CATG	1 cut(s)	187
FaiI	YATR	6 cut(s)	10, 77, 79, 149, 185, 191
FatI	CATG	1 cut(s)	183
Fnu4HI	GCNGC	1 cut(s)	113
Fsp4HI	GCNGC	1 cut(s)	113
GluI	GCNGC	1 cut(s)	113
GsaI	CCCAGC	1 cut(s)	19
HaeIII	GGCC	1 cut(s)	206
HapII	CCGG	1 cut(s)	144
Hin1II	CATG	1 cut(s)	187
HpaII	CCGG	1 cut(s)	144
HphI	GGTGA	2 cut(s)	189, 211
Hpy166II	GTNNAC	1 cut(s)	180
Hpy8I	GTNNAC	1 cut(s)	180
HpyCH4V	TGCA	1 cut(s)	87
HpyF10VI	GCNNNNNNNGC	1 cut(s)	112
HpyF3I	CTNAG	1 cut(s)	215
Hsp92II	CATG	1 cut(s)	187
LmnI	GCTCC	1 cut(s)	166
LpnPI	CCDG	6 cut(s)	29, 48, 70, 75, 92, 157
Lsp1109I	GCAGC	1 cut(s)	99
LweI	GCATC	1 cut(s)	74
MaeIII	GTNAC	2 cut(s)	4, 21
MboII	GAAGA	1 cut(s)	27
MfeI	CAATTG	1 cut(s)	101
MhlI	GDGCHC	1 cut(s)	158
MluCI	AATT	1 cut(s)	101
MnlI	CCTC	1 cut(s)	126
MspA1I	CMGCKG	1 cut(s)	19
MspI	CCGG	1 cut(s)	144
MspR9I	CCNGG	2 cut(s)	63, 144
MunI	CAATTG	1 cut(s)	101
MvaI	CCWGG	1 cut(s)	63
MwoI	GCNNNNNNNGC	1 cut(s)	112
NciI	CCSGG	1 cut(s)	144
NcoI	CCATGG	1 cut(s)	183
NlaIII	CATG	1 cut(s)	187
NmuCI	GTSAC	2 cut(s)	4, 21
PkrI	GCNGC	1 cut(s)	114
Psp6I	CCWGG	1 cut(s)	61
PspFI	CCCAGC	1 cut(s)	15
PspGI	CCWGG	1 cut(s)	61
PvuII	CAGCTG	1 cut(s)	19
SatI	GCNGC	1 cut(s)	113
ScrFI	CCNGG	2 cut(s)	63, 144
SduI	GDGCHC	1 cut(s)	158
SetI	ASST	2 cut(s)	21, 171
SfaNI	GCATC	1 cut(s)	74
Sse9I	AATT	1 cut(s)	101
StyD4I	CCNGG	2 cut(s)	61, 142
StyI	CCWWGG	4 cut(s)	93, 183, 194, 207
TasI	AATT	1 cut(s)	101
TseFI	GTSAC	2 cut(s)	4, 21
TseI	GCWGC	1 cut(s)	112
Tsp45I	GTSAC	2 cut(s)	4, 21
TspDTI	ATGAA	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.