RchiOBHm_Chr2g0098701

Belongs to the MIP aquaporin (TC 1.A.8) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0020378
Physical Location & Seq
Reverse (-)
11060761 .. 11061179
419 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ47349

Sequence Viewer

Length: 324 bp
ATGTCACGGTTGCCACCATCATCGGACACAAGAAGGAAGCTGCTCAGTGTGACGGCGTTGCTGTTCTTGGCATTAATTGCTTGGGCCTTTGGTGGCATGATCTTCATCCTGGTTTACTCCATCGCTGGAATCTCAGGCGGTCACATCAACCCTGCGGTGACTTTCGGGCTGTTGGTTGCGAGGAGGATGTCACTGCTCCGAACAGTGGCTTACATTGTTGCACAATGCTTAGGAGGCATATGCGGCGTAGGGTTAGTGAAAGCTTTGATAAAGCATTACTACCTCACGCATGGATCGAGGTGGTGCCAACTCGGTTGCTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MIP

Protein Analysis

107

Amino Acids

11.52

Weight (kDa)

10.16

Isoelectric Point (pI)

53.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MIP PF00230 23 - 93 2.2e-27 Major intrinsic protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020378)

Species Orthologous Gene IDs
malus_domestica MD00G1065600.v1.1 MD02G1111400.v1.1
rosa_chinensis RchiOBHm_Chr2g0098701
rosa_multiflora Rmu_co8065218.1_g000001
rosa_samantha Rh2BG125400 Rh2DG127500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 303
AciI CCGC 3 cut(s) 138, 155, 243
AclWI GGATC 1 cut(s) 301
AfiI CCNNNNNNNGG 1 cut(s) 205
AjnI CCWGG 1 cut(s) 108
AluBI AGCT 2 cut(s) 40, 263
AluI AGCT 2 cut(s) 40, 263
AlwI GGATC 1 cut(s) 301
AoxI GGCC 1 cut(s) 84
ApeKI GCWGC 1 cut(s) 40
AseI ATTAAT 1 cut(s) 74
AspS9I GGNCC 1 cut(s) 84
AsuHPI GGTGA 1 cut(s) 169
BanI GGYRCC 1 cut(s) 303
BbvI GCAGC 1 cut(s) 27
BccI CCATC 2 cut(s) 25, 128
BceAI ACGGC 1 cut(s) 69
BciT130I CCWGG 1 cut(s) 110
BisI GCNGC 2 cut(s) 41, 244
BlsI GCNGC 2 cut(s) 42, 245
Bme1390I CCNGG 1 cut(s) 110
BmgT120I GGNCC 1 cut(s) 84
BmiI GGNNCC 1 cut(s) 305
BmrFI CCNGG 1 cut(s) 110
Bpu10I CCTNAGC 1 cut(s) 229
BsaBI GATNNNNATC 1 cut(s) 104
Bsc4I CCNNNNNNNGG 1 cut(s) 205
Bse8I GATNNNNATC 1 cut(s) 104
BseBI CCWGG 1 cut(s) 110
BseGI GGATG 2 cut(s) 105, 192
BseJI GATNNNNATC 1 cut(s) 104
BseLI CCNNNNNNNGG 1 cut(s) 205
BseMII CTCAG 2 cut(s) 58, 147
BseRI GAGGAG 1 cut(s) 196
BseXI GCAGC 1 cut(s) 27
BshFI GGCC 1 cut(s) 86
BshNI GGYRCC 1 cut(s) 303
BslI CCNNNNNNNGG 1 cut(s) 205
BsnI GGCC 1 cut(s) 86
Bsp143I GATC 2 cut(s) 99, 293
BspACI CCGC 3 cut(s) 138, 155, 243
BspANI GGCC 1 cut(s) 86
BspCNI CTCAG 2 cut(s) 57, 146
BspLI GGNNCC 1 cut(s) 305
BspPI GGATC 1 cut(s) 301
BspT107I GGYRCC 1 cut(s) 303
BssMI GATC 2 cut(s) 99, 293
Bst2UI CCWGG 1 cut(s) 110
Bst4CI ACNGT 2 cut(s) 9, 205
BstAPI GCANNNNNTGC 1 cut(s) 77
BstDEI CTNAG 3 cut(s) 44, 133, 229
BstF5I GGATG 2 cut(s) 105, 192
BstKTI GATC 2 cut(s) 102, 296
BstMBI GATC 2 cut(s) 99, 293
BstMWI GCNNNNNNNGC 3 cut(s) 77, 234, 243
BstNI CCWGG 1 cut(s) 110
BstSCI CCNGG 1 cut(s) 108
BstV1I GCAGC 1 cut(s) 27
BsuRI GGCC 1 cut(s) 86
BtgZI GCGATG 1 cut(s) 106
BtsCI GGATG 2 cut(s) 105, 192
BtsI GCAGTG 1 cut(s) 191
BtsIMutI CAGTG 3 cut(s) 52, 191, 210
Cfr13I GGNCC 1 cut(s) 84
CviAII CATG 2 cut(s) 97, 290
CviJI RGCY 5 cut(s) 40, 86, 169, 209, 263
CviKI_1 RGCY 5 cut(s) 40, 86, 169, 209, 263
DdeI CTNAG 3 cut(s) 44, 133, 229
DpnI GATC 2 cut(s) 101, 295
DpnII GATC 2 cut(s) 99, 293
EcoRII CCWGG 1 cut(s) 108
FaeI CATG 2 cut(s) 100, 293
FaiI YATR 4 cut(s) 98, 239, 241, 291
FatI CATG 2 cut(s) 96, 289
FauNDI CATATG 1 cut(s) 239
Fnu4HI GCNGC 2 cut(s) 41, 244
FokI GGATG 2 cut(s) 92, 199
Fsp4HI GCNGC 2 cut(s) 41, 244
GluI GCNGC 2 cut(s) 41, 244
HaeIII GGCC 1 cut(s) 86
Hin1II CATG 2 cut(s) 100, 293
HindIII AAGCTT 1 cut(s) 261
HinfI GANTC 1 cut(s) 129
HphI GGTGA 1 cut(s) 169
Hpy166II GTNNAC 1 cut(s) 115
Hpy188I TCNGA 2 cut(s) 25, 200
Hpy188III TCNNGA 1 cut(s) 321
Hpy8I GTNNAC 1 cut(s) 115
HpyAV CCTTC 1 cut(s) 27
HpyCH4III ACNGT 2 cut(s) 9, 205
HpyCH4V TGCA 1 cut(s) 221
HpyF10VI GCNNNNNNNGC 3 cut(s) 77, 234, 243
HpyF3I CTNAG 3 cut(s) 44, 133, 229
Hsp92II CATG 2 cut(s) 100, 293
Kzo9I GATC 2 cut(s) 99, 293
LmnI GCTCC 2 cut(s) 201, 323
LpnPI CCDG 5 cut(s) 95, 111, 120, 122, 165
Lsp1109I GCAGC 1 cut(s) 27
MaeIII GTNAC 5 cut(s) 3, 49, 140, 157, 189
MalI GATC 2 cut(s) 101, 295
MboI GATC 2 cut(s) 99, 293
MboII GAAGA 1 cut(s) 94
MluCI AATT 1 cut(s) 75
MnlI CCTC 5 cut(s) 174, 177, 227, 291, 293
MseI TTAA 1 cut(s) 74
MspR9I CCNGG 1 cut(s) 110
MvaI CCWGG 1 cut(s) 110
MwoI GCNNNNNNNGC 3 cut(s) 77, 234, 243
NdeI CATATG 1 cut(s) 239
NdeII GATC 2 cut(s) 99, 293
NlaIII CATG 2 cut(s) 100, 293
NlaIV GGNNCC 1 cut(s) 305
NmuCI GTSAC 5 cut(s) 3, 49, 140, 157, 189
PcsI WCGNNNNNNNCGW 1 cut(s) 293
PfeI GAWTC 1 cut(s) 129
PkrI GCNGC 2 cut(s) 42, 245
PshBI ATTAAT 1 cut(s) 74
Psp6I CCWGG 1 cut(s) 108
PspGI CCWGG 1 cut(s) 108
PspN4I GGNNCC 1 cut(s) 305
PspPI GGNCC 1 cut(s) 84
SaqAI TTAA 1 cut(s) 74
SatI GCNGC 2 cut(s) 41, 244
Sau3AI GATC 2 cut(s) 99, 293
Sau96I GGNCC 1 cut(s) 84
ScrFI CCNGG 1 cut(s) 110
SetI ASST 4 cut(s) 42, 265, 285, 302
Sse9I AATT 1 cut(s) 75
SsiI CCGC 3 cut(s) 138, 155, 243
StyD4I CCNGG 1 cut(s) 108
TaaI ACNGT 2 cut(s) 9, 205
TaqI TCGA 1 cut(s) 296
TasI AATT 1 cut(s) 75
TauI GCSGC 1 cut(s) 246
TfiI GAWTC 1 cut(s) 129
Tru1I TTAA 1 cut(s) 74
Tru9I TTAA 1 cut(s) 74
TscAI CASTG 3 cut(s) 52, 198, 210
TseFI GTSAC 5 cut(s) 3, 49, 140, 157, 189
TseI GCWGC 1 cut(s) 40
Tsp45I GTSAC 5 cut(s) 3, 49, 140, 157, 189
TspDTI ATGAA 1 cut(s) 94
TspRI CASTG 3 cut(s) 52, 198, 210
VspI ATTAAT 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.