Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0021173

Physical Location & Seq

Genomic Coordinates Reverse (-)

11718823 .. 11719953

Gene Structure 1131 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1140900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGTCTGGATCTCTACCAGTATCTGATGCTGAAATCTCTGAGGAAGATAGAAAGACTAAAGTCGGGTCGTTGAAGAAGAAGGCAATGAATGCCTCTGTTAGGTTCAGAAATTCTTTTTCAACAAGGGGTAGAACAAGCAGTAGTAAAGTCTTGTCTATCGACATTGAGGATGTACATGACTTAGAGGAGATACAGGCTGTTGACTCGCTGCGGCAGGCTCTTATATTGGAGGAGCTTCTTCCTTTCAAGCACGATGATTATCATAAGATGCTCAGATTCTTGAAGGCCAGGAAATTTGATGTCGACAAAACCAAGAAAATGTGGTCTGACATGCTCGAGTGGAGGAAGGCATTCGGTGCTGACACAATCATGGAGGACTTTTACTTCAAGGAACTCGATGAAGTCTTGCAATACTACCCCCAAGGACATCATGGCATAGACAAGGAAGGACGACCTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0003006 GO:0003674 GO:0005215 GO:0005319 GO:0005548 GO:0005575 GO:0005622 GO:0005623 GO:0005628 GO:0005634 GO:0006810 GO:0006811 GO:0006820 GO:0006869 GO:0006996 GO:0007010 GO:0007017 GO:0007049 GO:0008150 GO:0008525 GO:0008526 GO:0009653 GO:0009987 GO:0010876 GO:0010927 GO:0015711 GO:0015748 GO:0015914 GO:0016020 GO:0016043 GO:0016192 GO:0019953 GO:0022402 GO:0022413 GO:0022414 GO:0022607 GO:0030154 GO:0030427 GO:0030435 GO:0030437 GO:0031321 GO:0031322 GO:0032153 GO:0032502 GO:0032505 GO:0032989 GO:0033036 GO:0034293 GO:0035838 GO:0042763 GO:0042764 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043934 GO:0043935 GO:0044085 GO:0044424 GO:0044464 GO:0044703 GO:0048193 GO:0048468 GO:0048646 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051286 GO:0051321 GO:0051704 GO:0060187 GO:0061024 GO:0071702 GO:0071840 GO:0120009 GO:0120010 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO CRAL_TRIO_N

Protein Analysis

154

Amino Acids

17.8

Weight (kDa)

6.22

Isoelectric Point (pI)

47.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CRAL_TRIO_N	PF03765	84 - 109	4.5e-07	CRAL/TRIO, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021173)

Species	Orthologous Gene IDs
malus_domestica	MD02G1140900.v1.1
prunus_persica	Prupe.7G244800_v2.0.a1
pyrus_communis	pycom05g05410
rosa_roxburghii	Rroxscaffold_7G00202410
rosa_samantha	Rh6DG125400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	303
AciI	CCGC	1 cut(s)	211
AclWI	GGATC	1 cut(s)	16
AcsI	RAATTY	2 cut(s)	109, 293
AfaI	GTAC	1 cut(s)	174
AfiI	CCNNNNNNNGG	1 cut(s)	99
AgsI	TTSAA	5 cut(s)	73, 120, 247, 283, 388
AjnI	CCWGG	1 cut(s)	287
AluBI	AGCT	1 cut(s)	235
AluI	AGCT	1 cut(s)	235
AlwI	GGATC	1 cut(s)	16
AlwNI	CAGNNNCTG	1 cut(s)	23
Ama87I	CYCGRG	1 cut(s)	335
AoxI	GGCC	1 cut(s)	285
ApeKI	GCWGC	1 cut(s)	208
ApoI	RAATTY	2 cut(s)	109, 293
Asp700I	GAANNNNTTC	1 cut(s)	350
AvaI	CYCGRG	1 cut(s)	335
BbvI	GCAGC	1 cut(s)	195
BciT130I	CCWGG	1 cut(s)	289
BisI	GCNGC	2 cut(s)	209, 212
BlsI	GCNGC	2 cut(s)	210, 213
Bme1390I	CCNGG	1 cut(s)	289
BmeT110I	CYCGRG	1 cut(s)	335
BmrFI	CCNGG	1 cut(s)	289
BmsI	GCATC	2 cut(s)	16, 258
BoxI	GACNNNNGTC	1 cut(s)	59
BsaBI	GATNNNNATC	1 cut(s)	258
BsaJI	CCNNGG	1 cut(s)	421
Bsc4I	CCNNNNNNNGG	1 cut(s)	99
Bse1I	ACTGG	1 cut(s)	17
Bse3DI	GCAATG	1 cut(s)	90
Bse8I	GATNNNNATC	1 cut(s)	258
BseBI	CCWGG	1 cut(s)	289
BseDI	CCNNGG	1 cut(s)	421
BseGI	GGATG	1 cut(s)	175
BseJI	GATNNNNATC	1 cut(s)	258
BseLI	CCNNNNNNNGG	1 cut(s)	99
BseMI	GCAATG	1 cut(s)	90
BseMII	CTCAG	2 cut(s)	30, 286
BseNI	ACTGG	1 cut(s)	17
BseRI	GAGGAG	2 cut(s)	200, 245
BseXI	GCAGC	1 cut(s)	195
BshFI	GGCC	1 cut(s)	287
BsiHKCI	CYCGRG	1 cut(s)	335
BslI	CCNNNNNNNGG	1 cut(s)	99
BsmI	GAATGC	2 cut(s)	94, 350
BsnI	GGCC	1 cut(s)	287
BsoBI	CYCGRG	1 cut(s)	335
Bsp1407I	TGTACA	1 cut(s)	172
Bsp143I	GATC	1 cut(s)	8
BspACI	CCGC	1 cut(s)	211
BspANI	GGCC	1 cut(s)	287
BspCNI	CTCAG	2 cut(s)	31, 285
BspPI	GGATC	1 cut(s)	16
BsrDI	GCAATG	1 cut(s)	90
BsrGI	TGTACA	1 cut(s)	172
BsrI	ACTGG	1 cut(s)	17
BssECI	CCNNGG	1 cut(s)	421
BssMI	GATC	1 cut(s)	8
BssT1I	CCWWGG	1 cut(s)	421
Bst2UI	CCWGG	1 cut(s)	289
BstAPI	GCANNNNNTGC	2 cut(s)	89, 356
BstAUI	TGTACA	1 cut(s)	172
BstC8I	GCNNGC	1 cut(s)	216
BstDEI	CTNAG	3 cut(s)	39, 181, 272
BstENI	CCTNNNNNAGG	1 cut(s)	97
BstF5I	GGATG	1 cut(s)	175
BstKTI	GATC	1 cut(s)	11
BstMBI	GATC	1 cut(s)	8
BstMWI	GCNNNNNNNGC	2 cut(s)	89, 356
BstNI	CCWGG	1 cut(s)	289
BstNSI	RCATGY	1 cut(s)	334
BstPAI	GACNNNNGTC	1 cut(s)	59
BstSCI	CCNGG	1 cut(s)	287
BstV1I	GCAGC	1 cut(s)	195
BstX2I	RGATCY	1 cut(s)	8
BstYI	RGATCY	1 cut(s)	8
BsuRI	GGCC	1 cut(s)	287
BtsCI	GGATG	1 cut(s)	175
Cac8I	GCNNGC	1 cut(s)	216
CaiI	CAGNNNCTG	1 cut(s)	23
Csp6I	GTAC	1 cut(s)	173
CviAII	CATG	4 cut(s)	176, 331, 370, 431
CviJI	RGCY	4 cut(s)	197, 218, 235, 287
CviKI_1	RGCY	4 cut(s)	197, 218, 235, 287
CviQI	GTAC	1 cut(s)	173
DdeI	CTNAG	3 cut(s)	39, 181, 272
DpnI	GATC	1 cut(s)	10
DpnII	GATC	1 cut(s)	8
Eco130I	CCWWGG	1 cut(s)	421
Eco88I	CYCGRG	1 cut(s)	335
EcoNI	CCTNNNNNAGG	1 cut(s)	97
EcoRII	CCWGG	1 cut(s)	287
EcoT14I	CCWWGG	1 cut(s)	421
ErhI	CCWWGG	1 cut(s)	421
FaeI	CATG	4 cut(s)	179, 334, 373, 434
FaiI	YATR	7 cut(s)	177, 224, 264, 332, 371, 432, 437
FatI	CATG	4 cut(s)	175, 330, 369, 430
FblI	GTMKAC	1 cut(s)	303
Fnu4HI	GCNGC	2 cut(s)	209, 212
FokI	GGATG	1 cut(s)	182
Fsp4HI	GCNGC	2 cut(s)	209, 212
GluI	GCNGC	2 cut(s)	209, 212
HaeIII	GGCC	1 cut(s)	287
Hin1II	CATG	4 cut(s)	179, 334, 373, 434
HincII	GTYRAC	2 cut(s)	202, 304
HindII	GTYRAC	2 cut(s)	202, 304
HinfI	GANTC	2 cut(s)	203, 276
Hpy166II	GTNNAC	2 cut(s)	202, 304
Hpy188I	TCNGA	5 cut(s)	25, 40, 107, 275, 328
Hpy188III	TCNNGA	2 cut(s)	6, 280
Hpy8I	GTNNAC	2 cut(s)	202, 304
HpyAV	CCTTC	4 cut(s)	73, 277, 340, 440
HpyCH4V	TGCA	1 cut(s)	409
HpyF10VI	GCNNNNNNNGC	2 cut(s)	89, 356
HpyF3I	CTNAG	3 cut(s)	39, 181, 272
Hsp92II	CATG	4 cut(s)	179, 334, 373, 434
Kzo9I	GATC	1 cut(s)	8
LmnI	GCTCC	1 cut(s)	232
LpnPI	CCDG	5 cut(s)	30, 179, 200, 274, 301
Lsp1109I	GCAGC	1 cut(s)	195
LweI	GCATC	2 cut(s)	16, 258
MalI	GATC	1 cut(s)	10
MboI	GATC	1 cut(s)	8
MboII	GAAGA	4 cut(s)	56, 85, 88, 230
MflI	RGATCY	1 cut(s)	8
MluCI	AATT	2 cut(s)	109, 293
MlyI	GAGTC	1 cut(s)	197
MnlI	CCTC	7 cut(s)	34, 103, 160, 178, 223, 336, 367
MroXI	GAANNNNTTC	1 cut(s)	350
MslI	CAYNNNNRTG	1 cut(s)	368
MspR9I	CCNGG	1 cut(s)	289
Mva1269I	GAATGC	2 cut(s)	94, 350
MvaI	CCWGG	1 cut(s)	289
MwoI	GCNNNNNNNGC	2 cut(s)	89, 356
NdeII	GATC	1 cut(s)	8
NlaIII	CATG	4 cut(s)	179, 334, 373, 434
NspI	RCATGY	1 cut(s)	334
PaeR7I	CTCGAG	1 cut(s)	335
PctI	GAATGC	2 cut(s)	94, 350
PdmI	GAANNNNTTC	1 cut(s)	350
PfeI	GAWTC	1 cut(s)	276
PkrI	GCNGC	2 cut(s)	210, 213
PleI	GAGTC	1 cut(s)	197
PpsI	GAGTC	1 cut(s)	197
PshAI	GACNNNNGTC	1 cut(s)	59
Psp6I	CCWGG	1 cut(s)	287
PspGI	CCWGG	1 cut(s)	287
PspXI	VCTCGAGB	1 cut(s)	335
PstNI	CAGNNNCTG	1 cut(s)	23
PsuI	RGATCY	1 cut(s)	8
RsaI	GTAC	1 cut(s)	174
RsaNI	GTAC	1 cut(s)	173
RseI	CAYNNNNRTG	1 cut(s)	368
SalI	GTCGAC	1 cut(s)	302
SatI	GCNGC	2 cut(s)	209, 212
Sau3AI	GATC	1 cut(s)	8
SchI	GAGTC	1 cut(s)	197
ScrFI	CCNGG	1 cut(s)	289
SetI	ASST	3 cut(s)	104, 237, 457
SfaNI	GCATC	2 cut(s)	16, 258
Sfr274I	CTCGAG	1 cut(s)	335
SlaI	CTCGAG	1 cut(s)	335
SmiMI	CAYNNNNRTG	1 cut(s)	368
SmlI	CTYRAG	1 cut(s)	335
SmoI	CTYRAG	1 cut(s)	335
Sse9I	AATT	2 cut(s)	109, 293
SsiI	CCGC	1 cut(s)	211
StyD4I	CCNGG	1 cut(s)	287
StyI	CCWWGG	1 cut(s)	421
TaqI	TCGA	4 cut(s)	159, 303, 336, 396
TasI	AATT	2 cut(s)	109, 293
TatI	WGTACW	1 cut(s)	172
TauI	GCSGC	1 cut(s)	214
TfiI	GAWTC	1 cut(s)	276
TseI	GCWGC	1 cut(s)	208
TspDTI	ATGAA	2 cut(s)	101, 414
XagI	CCTNNNNNAGG	1 cut(s)	97
XapI	RAATTY	2 cut(s)	109, 293
XceI	RCATGY	1 cut(s)	334
XcmI	CCANNNNNNNNNTGG	1 cut(s)	428
XhoI	CTCGAG	1 cut(s)	335
XmiI	GTMKAC	1 cut(s)	303
XmnI	GAANNNNTTC	1 cut(s)	350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.